RNA–Protein interactions for RNA: ENST00000439369.6

SCLT1-202, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 966 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-202ENST00000439369 NIP7Q9Y221 180 aaKnown RBP eCLIP15.97■□□□□ 0.15
SCLT1-202ENST00000439369 CARMIL3Q8ND23 1372 aa15.97■□□□□ 0.15
SCLT1-202ENST00000439369 AFDNP55196 1824 aaKnown RBP15.96■□□□□ 0.15
SCLT1-202ENST00000439369 MSH5O43196 834 aa15.96■□□□□ 0.15
SCLT1-202ENST00000439369 PCCAP05165 728 aaPredicted RBP15.96■□□□□ 0.15
SCLT1-202ENST00000439369 HSP90B1P14625 803 aaKnown RBP15.96■□□□□ 0.15
SCLT1-202ENST00000439369 SETDB2Q96T68 719 aa15.96■□□□□ 0.15
SCLT1-202ENST00000439369 NYXQ9GZU5 481 aa15.96■□□□□ 0.15
SCLT1-202ENST00000439369 ZBTB40Q9NUA8 1239 aa15.96■□□□□ 0.15
SCLT1-202ENST00000439369 C9orf78Q9NZ63 289 aaPredicted RBP15.96■□□□□ 0.15
SCLT1-202ENST00000439369 UBN2Q6ZU65 1347 aa15.95■□□□□ 0.14
SCLT1-202ENST00000439369 H7C1W4 665 aa15.95■□□□□ 0.14
SCLT1-202ENST00000439369 UBTFL1P0CB47 393 aaPredicted RBP15.95■□□□□ 0.14
SCLT1-202ENST00000439369 TM4SF1P30408 202 aa15.95■□□□□ 0.14
SCLT1-202ENST00000439369 FKBP8Q14318 412 aa15.95■□□□□ 0.14
SCLT1-202ENST00000439369 TBC1D9BQ66K14 1250 aa15.95■□□□□ 0.14
SCLT1-202ENST00000439369 ZBTB38Q8NAP3 1195 aaPredicted RBP15.95■□□□□ 0.14
SCLT1-202ENST00000439369 GPTP24298 496 aa15.94■□□□□ 0.14
SCLT1-202ENST00000439369 NFIXQ14938 502 aa15.94■□□□□ 0.14
SCLT1-202ENST00000439369 EXOC6Q8TAG9 804 aa15.94■□□□□ 0.14
SCLT1-202ENST00000439369 MEIS3Q99687 375 aa15.94■□□□□ 0.14
SCLT1-202ENST00000439369 UTP14AQ9BVJ6 771 aaKnown RBP15.94■□□□□ 0.14
SCLT1-202ENST00000439369 CDHR2Q9BYE9 1310 aa15.94■□□□□ 0.14
SCLT1-202ENST00000439369 CASZ1Q86V15 1759 aa15.93■□□□□ 0.14
SCLT1-202ENST00000439369 NTSR2O95665 410 aa15.93■□□□□ 0.14
SCLT1-202ENST00000439369 RIC1Q4ADV7 1423 aa15.93■□□□□ 0.14
SCLT1-202ENST00000439369 SH3TC1Q8TE82 1336 aa15.93■□□□□ 0.14
SCLT1-202ENST00000439369 GNAI2P04899 355 aa15.92■□□□□ 0.14
SCLT1-202ENST00000439369 CASP7P55210 303 aa15.92■□□□□ 0.14
SCLT1-202ENST00000439369 IRX6P78412 446 aaPredicted RBP15.92■□□□□ 0.14
SCLT1-202ENST00000439369 SUSD4Q5VX71 490 aa15.92■□□□□ 0.14
SCLT1-202ENST00000439369 TPTE2Q6XPS3 522 aa15.92■□□□□ 0.14
SCLT1-202ENST00000439369 TRMT112Q9UI30 125 aaKnown RBP15.92■□□□□ 0.14
SCLT1-202ENST00000439369 NBPF7P0C2Y1 421 aaPredicted RBP15.91■□□□□ 0.14
SCLT1-202ENST00000439369 UBE3BQ7Z3V4 1068 aa15.91■□□□□ 0.14
SCLT1-202ENST00000439369 NBPF5PQ86XG9 351 aaPredicted RBP15.91■□□□□ 0.14
SCLT1-202ENST00000439369 PLA2G12BQ9BX93 195 aa15.91■□□□□ 0.14
SCLT1-202ENST00000439369 POLRMTO00411 1230 aaKnown RBP15.9■□□□□ 0.14
SCLT1-202ENST00000439369 SOCS7O14512 581 aa15.9■□□□□ 0.14
SCLT1-202ENST00000439369 R3HDM1Q15032 1099 aaKnown RBP15.9■□□□□ 0.14
SCLT1-202ENST00000439369 SLC10A5Q5PT55 438 aa15.9■□□□□ 0.14
SCLT1-202ENST00000439369 BICDL1Q6ZP65 573 aa15.9■□□□□ 0.14
SCLT1-202ENST00000439369 MTFR1LQ9H019 292 aa15.9■□□□□ 0.14
SCLT1-202ENST00000439369 NRXN2Q9P2S2 1712 aa15.89■□□□□ 0.13
SCLT1-202ENST00000439369 RPAP2Q8IXW5 612 aaPredicted RBP15.89■□□□□ 0.13
SCLT1-202ENST00000439369 PARP3Q9Y6F1 533 aa15.89■□□□□ 0.13
SCLT1-202ENST00000439369 LAMB2P55268 1798 aa15.89■□□□□ 0.13
SCLT1-202ENST00000439369 SERPINB2P05120 415 aa15.88■□□□□ 0.13
SCLT1-202ENST00000439369 MMP10P09238 476 aa15.88■□□□□ 0.13
SCLT1-202ENST00000439369 DDR1Q08345 913 aa15.88■□□□□ 0.13
SCLT1-202ENST00000439369 MTX1Q13505 466 aa15.88■□□□□ 0.13
SCLT1-202ENST00000439369 CNBD1Q8NA66 436 aa15.88■□□□□ 0.13
SCLT1-202ENST00000439369 FAM89AQ96GI7 184 aa15.88■□□□□ 0.13
SCLT1-202ENST00000439369 IRS4O14654 1257 aaPredicted RBP15.87■□□□□ 0.13
SCLT1-202ENST00000439369 PDE8AO60658 829 aa15.87■□□□□ 0.13
SCLT1-202ENST00000439369 GTF2E1P29083 439 aaPredicted RBP15.87■□□□□ 0.13
SCLT1-202ENST00000439369 ST5P78524 1137 aa15.87■□□□□ 0.13
SCLT1-202ENST00000439369 RABL6Q3YEC7 729 aaPredicted RBP15.87■□□□□ 0.13
SCLT1-202ENST00000439369 SUCLG2Q96I99 432 aa15.87■□□□□ 0.13
SCLT1-202ENST00000439369 LRRFIP2Q9Y608 721 aaKnown RBP15.87■□□□□ 0.13
SCLT1-202ENST00000439369 PRR5LQ6MZQ0 368 aa15.86■□□□□ 0.13
SCLT1-202ENST00000439369 ANKRD44Q8N8A2 993 aa15.86■□□□□ 0.13
SCLT1-202ENST00000439369 KAZALD1Q96I82 304 aa15.86■□□□□ 0.13
SCLT1-202ENST00000439369 PDGFDQ9GZP0 370 aaPredicted RBP15.86■□□□□ 0.13
SCLT1-202ENST00000439369 RTL9Q8NET4 1388 aa15.86■□□□□ 0.13
SCLT1-202ENST00000439369 NPHP1O15259 732 aa15.85■□□□□ 0.13
SCLT1-202ENST00000439369 CTSWP56202 376 aa15.85■□□□□ 0.13
SCLT1-202ENST00000439369 FOXO4P98177 505 aa15.85■□□□□ 0.13
SCLT1-202ENST00000439369 ERFEQ4G0M1 354 aa15.85■□□□□ 0.13
SCLT1-202ENST00000439369 MSL1Q68DK7 614 aa15.85■□□□□ 0.13
SCLT1-202ENST00000439369 CEP85Q6P2H3 762 aa15.85■□□□□ 0.13
SCLT1-202ENST00000439369 BICC1Q9H694 974 aaKnown RBP15.85■□□□□ 0.13
SCLT1-202ENST00000439369 FAM177BA6PVY3 158 aa15.84■□□□□ 0.13
SCLT1-202ENST00000439369 HMMRO75330 724 aa15.84■□□□□ 0.13
SCLT1-202ENST00000439369 CSF1RP07333 972 aa15.84■□□□□ 0.13
SCLT1-202ENST00000439369 ATP8B2P98198 1209 aa15.84■□□□□ 0.13
SCLT1-202ENST00000439369 PPP4R2Q9NY27 417 aa15.84■□□□□ 0.13
SCLT1-202ENST00000439369 DDX60Q8IY21 1712 aaKnown RBP15.84■□□□□ 0.13
SCLT1-202ENST00000439369 ABCC12Q96J65 1359 aa15.84■□□□□ 0.13
SCLT1-202ENST00000439369 POLD1P28340 1107 aa15.83■□□□□ 0.12
SCLT1-202ENST00000439369 HDAC1Q13547 482 aaPredicted RBP15.83■□□□□ 0.12
SCLT1-202ENST00000439369 SF3B3Q15393 1217 aaKnown RBP15.83■□□□□ 0.12
SCLT1-202ENST00000439369 RTL5Q5HYW3 569 aaPredicted RBP15.83■□□□□ 0.12
SCLT1-202ENST00000439369 NUTM1Q86Y26 1132 aa15.83■□□□□ 0.12
SCLT1-202ENST00000439369 NLRP3Q96P20 1036 aa15.83■□□□□ 0.12
SCLT1-202ENST00000439369 BRIP1Q9BX63 1249 aa15.83■□□□□ 0.12
SCLT1-202ENST00000439369 C1orf115Q9H7X2 142 aa15.83■□□□□ 0.12
SCLT1-202ENST00000439369 PDZRN3Q9UPQ7 1066 aa15.83■□□□□ 0.12
SCLT1-202ENST00000439369 PCDHB15Q9Y5E8 787 aa15.83■□□□□ 0.12
SCLT1-202ENST00000439369 KLRG2A4D1S0 409 aaPredicted RBP15.82■□□□□ 0.12
SCLT1-202ENST00000439369 PSDA5PKW4 1024 aaPredicted RBP15.82■□□□□ 0.12
SCLT1-202ENST00000439369 CCDC152Q4G0S7 254 aa15.82■□□□□ 0.12
SCLT1-202ENST00000439369 EPHA10Q5JZY3 1008 aa15.82■□□□□ 0.12
SCLT1-202ENST00000439369 LMBR1LQ6UX01 489 aa15.82■□□□□ 0.12
SCLT1-202ENST00000439369 SYNE4Q8N205 404 aa15.82■□□□□ 0.12
SCLT1-202ENST00000439369 TTLL11Q8NHH1 800 aa15.82■□□□□ 0.12
SCLT1-202ENST00000439369 SSH3Q8TE77 659 aa15.82■□□□□ 0.12
SCLT1-202ENST00000439369 JARID2Q92833 1246 aaPredicted RBP15.82■□□□□ 0.12
SCLT1-202ENST00000439369 MYH3P11055 1940 aa15.82■□□□□ 0.12
SCLT1-202ENST00000439369 ZBTB7AO95365 584 aa15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms