RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 KRTAP3-3Q9BYR6 98 aa10.34□□□□□ -0.75
VPS50-204ENST00000438395 KRTAP3-2Q9BYR7 98 aa10.34□□□□□ -0.75
VPS50-204ENST00000438395 ZSWIM6Q9HCJ5 1215 aa10.34□□□□□ -0.75
VPS50-204ENST00000438395 GTPBP6O43824 516 aaPredicted RBP10.33□□□□□ -0.76
VPS50-204ENST00000438395 IL17REQ8NFR9 667 aa10.33□□□□□ -0.76
VPS50-204ENST00000438395 RTN4Q9NQC3 1192 aaKnown RBP10.33□□□□□ -0.76
VPS50-204ENST00000438395 PDZRN3Q9UPQ7 1066 aa10.33□□□□□ -0.76
VPS50-204ENST00000438395 CARMIL3Q8ND23 1372 aa10.33□□□□□ -0.76
VPS50-204ENST00000438395 KIAA1551Q9HCM1 1747 aa10.33□□□□□ -0.76
VPS50-204ENST00000438395 ZC3H4Q9UPT8 1303 aaKnown RBP10.33□□□□□ -0.76
VPS50-204ENST00000438395 LMNB1P20700 586 aa10.32□□□□□ -0.76
VPS50-204ENST00000438395 PDE6BP35913 854 aa10.32□□□□□ -0.76
VPS50-204ENST00000438395 IL6STP40189 918 aaPredicted RBP10.32□□□□□ -0.76
VPS50-204ENST00000438395 EIF5P55010 431 aaKnown RBP10.32□□□□□ -0.76
VPS50-204ENST00000438395 ST5P78524 1137 aa10.32□□□□□ -0.76
VPS50-204ENST00000438395 CNBD1Q8NA66 436 aa10.32□□□□□ -0.76
VPS50-204ENST00000438395 RBM46Q8TBY0 533 aaKnown RBP10.32□□□□□ -0.76
VPS50-204ENST00000438395 ZNF622Q969S3 477 aaKnown RBP eCLIP10.32□□□□□ -0.76
VPS50-204ENST00000438395 RSPH6AQ9H0K4 717 aa10.32□□□□□ -0.76
VPS50-204ENST00000438395 TBC1D2BQ9UPU7 963 aa10.32□□□□□ -0.76
VPS50-204ENST00000438395 ZNF652Q9Y2D9 606 aa10.32□□□□□ -0.76
VPS50-204ENST00000438395 CEMIPQ8WUJ3 1361 aa10.31□□□□□ -0.76
VPS50-204ENST00000438395 RASSF7Q02833 373 aa10.31□□□□□ -0.76
VPS50-204ENST00000438395 SETDB2Q96T68 719 aa10.31□□□□□ -0.76
VPS50-204ENST00000438395 BCL2L12Q9HB09 334 aa10.31□□□□□ -0.76
VPS50-204ENST00000438395 ADAMTS7Q9UKP4 1686 aa10.31□□□□□ -0.76
VPS50-204ENST00000438395 A1BGP04217 495 aa10.3□□□□□ -0.76
VPS50-204ENST00000438395 NUDT7P0C024 238 aa10.3□□□□□ -0.76
VPS50-204ENST00000438395 PPP2R1AP30153 589 aa10.3□□□□□ -0.76
VPS50-204ENST00000438395 FSTL1Q12841 308 aa10.3□□□□□ -0.76
VPS50-204ENST00000438395 TBC1D9BQ66K14 1250 aa10.3□□□□□ -0.76
VPS50-204ENST00000438395 DZIP3Q86Y13 1208 aaKnown RBP10.3□□□□□ -0.76
VPS50-204ENST00000438395 PHACTR3Q96KR7 559 aa10.3□□□□□ -0.76
VPS50-204ENST00000438395 BRIP1Q9BX63 1249 aa10.3□□□□□ -0.76
VPS50-204ENST00000438395 SNRPA1P09661 255 aaKnown RBP10.29□□□□□ -0.76
VPS50-204ENST00000438395 DSG2Q14126 1118 aa10.29□□□□□ -0.76
VPS50-204ENST00000438395 NBPF5PQ86XG9 351 aaPredicted RBP10.29□□□□□ -0.76
VPS50-204ENST00000438395 PLPP6Q8IY26 295 aa10.29□□□□□ -0.76
VPS50-204ENST00000438395 SMC1BQ8NDV3 1235 aa10.29□□□□□ -0.76
VPS50-204ENST00000438395 RRAGCQ9HB90 399 aa10.29□□□□□ -0.76
VPS50-204ENST00000438395 GPHNQ9NQX3 736 aaPredicted RBP10.29□□□□□ -0.76
VPS50-204ENST00000438395 PCDHGA4Q9Y5G9 962 aa10.29□□□□□ -0.76
VPS50-204ENST00000438395 UBR2Q8IWV8 1755 aa10.29□□□□□ -0.76
VPS50-204ENST00000438395 ARFGEF1Q9Y6D6 1849 aa10.28□□□□□ -0.76
VPS50-204ENST00000438395 SOGA3Q5TF21 947 aa10.28□□□□□ -0.76
VPS50-204ENST00000438395 PRR5LQ6MZQ0 368 aa10.28□□□□□ -0.76
VPS50-204ENST00000438395 MCM10Q7L590 875 aa10.28□□□□□ -0.76
VPS50-204ENST00000438395 SPNS2Q8IVW8 549 aa10.28□□□□□ -0.76
VPS50-204ENST00000438395 BRCA1P38398 1863 aaKnown RBP10.27□□□□□ -0.76
VPS50-204ENST00000438395 KCNQ3O43525 872 aa10.27□□□□□ -0.77
VPS50-204ENST00000438395 HTATSF1O43719 755 aaKnown RBP10.27□□□□□ -0.77
VPS50-204ENST00000438395 C21orf2O43822 256 aa10.27□□□□□ -0.77
VPS50-204ENST00000438395 CAMTA2O94983 1202 aa10.27□□□□□ -0.77
VPS50-204ENST00000438395 VEGFAP15692 232 aaPredicted RBP10.27□□□□□ -0.77
VPS50-204ENST00000438395 CCDC24Q8N4L8 307 aa10.27□□□□□ -0.77
VPS50-204ENST00000438395 CNKSR1Q969H4 720 aa10.27□□□□□ -0.77
VPS50-204ENST00000438395 TAOK3Q9H2K8 898 aa10.27□□□□□ -0.77
VPS50-204ENST00000438395 SCN7AQ01118 1682 aa10.27□□□□□ -0.77
VPS50-204ENST00000438395 MAPK8IP3Q9UPT6 1336 aa10.27□□□□□ -0.77
VPS50-204ENST00000438395 GLTPD2A6NH11 291 aa10.26□□□□□ -0.77
VPS50-204ENST00000438395 NFKBIEO00221 500 aa10.26□□□□□ -0.77
VPS50-204ENST00000438395 GTF2E1P29083 439 aaPredicted RBP10.26□□□□□ -0.77
VPS50-204ENST00000438395 PIP4K2AP48426 406 aaPredicted RBP10.26□□□□□ -0.77
VPS50-204ENST00000438395 FOXK1P85037 733 aa10.26□□□□□ -0.77
VPS50-204ENST00000438395 ERFEQ4G0M1 354 aa10.26□□□□□ -0.77
VPS50-204ENST00000438395 IFFO2Q5TF58 517 aa10.26□□□□□ -0.77
VPS50-204ENST00000438395 STYK1Q6J9G0 422 aa10.26□□□□□ -0.77
VPS50-204ENST00000438395 CLEC4GQ6UXB4 293 aa10.26□□□□□ -0.77
VPS50-204ENST00000438395 PNISRQ8TF01 805 aaKnown RBP10.26□□□□□ -0.77
VPS50-204ENST00000438395 RYDENQ9NUL5 291 aaKnown RBP10.26□□□□□ -0.77
VPS50-204ENST00000438395 ZNF316A6NFI3 1004 aaPredicted RBP10.25□□□□□ -0.77
VPS50-204ENST00000438395 DCTN1Q14203 1278 aa10.25□□□□□ -0.77
VPS50-204ENST00000438395 TAF7Q15545 349 aaPredicted RBP10.25□□□□□ -0.77
VPS50-204ENST00000438395 PRPF40BQ6NWY9 871 aaKnown RBP10.25□□□□□ -0.77
VPS50-204ENST00000438395 TPTE2Q6XPS3 522 aa10.25□□□□□ -0.77
VPS50-204ENST00000438395 MASTLQ96GX5 879 aa10.25□□□□□ -0.77
VPS50-204ENST00000438395 PNNQ9H307 717 aaKnown RBP10.25□□□□□ -0.77
VPS50-204ENST00000438395 NIP7Q9Y221 180 aaKnown RBP eCLIP10.25□□□□□ -0.77
VPS50-204ENST00000438395 USP16Q9Y5T5 823 aa10.25□□□□□ -0.77
VPS50-204ENST00000438395 TNRC6CQ9HCJ0 1690 aaKnown RBP10.25□□□□□ -0.77
VPS50-204ENST00000438395 NRXN2Q9P2S2 1712 aa10.24□□□□□ -0.77
VPS50-204ENST00000438395 FAM177BA6PVY3 158 aa10.24□□□□□ -0.77
VPS50-204ENST00000438395 SLC34A2O95436 690 aa10.24□□□□□ -0.77
VPS50-204ENST00000438395 KIF6Q6ZMV9 814 aa10.24□□□□□ -0.77
VPS50-204ENST00000438395 AFDNP55196 1824 aaKnown RBP10.23□□□□□ -0.77
VPS50-204ENST00000438395 PRAMEF22A3QJZ6 481 aa10.23□□□□□ -0.77
VPS50-204ENST00000438395 SRGNP10124 158 aa10.23□□□□□ -0.77
VPS50-204ENST00000438395 NPR1P16066 1061 aa10.23□□□□□ -0.77
VPS50-204ENST00000438395 CCDC93Q567U6 631 aa10.23□□□□□ -0.77
VPS50-204ENST00000438395 KLRG1Q96E93 195 aa10.23□□□□□ -0.77
VPS50-204ENST00000438395 LHX6Q9UPM6 363 aa10.23□□□□□ -0.77
VPS50-204ENST00000438395 LTBP3Q9NS15 1303 aa10.23□□□□□ -0.77
VPS50-204ENST00000438395 VIRMAQ69YN4 1812 aaKnown RBP10.23□□□□□ -0.77
VPS50-204ENST00000438395 SIPA1L3O60292 1781 aaPredicted RBP10.22□□□□□ -0.77
VPS50-204ENST00000438395 DLEC1Q9Y238 1755 aa10.22□□□□□ -0.77
VPS50-204ENST00000438395 MMRN1Q13201 1228 aa10.22□□□□□ -0.77
VPS50-204ENST00000438395 NGEFQ8N5V2 710 aa10.22□□□□□ -0.77
VPS50-204ENST00000438395 NYXQ9GZU5 481 aa10.22□□□□□ -0.77
VPS50-204ENST00000438395 CRISPLD2Q9H0B8 497 aa10.22□□□□□ -0.77
VPS50-204ENST00000438395 MIS18AQ9NYP9 233 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms