RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 LMBR1LQ6UX01 489 aa25.96■■□□□ 1.75
PTPRF-207ENST00000436724 GIGYF2Q6Y7W6 1299 aaKnown RBP25.96■■□□□ 1.75
PTPRF-207ENST00000436724 GPTP24298 496 aa25.95■■□□□ 1.74
PTPRF-207ENST00000436724 RFX5P48382 616 aaPredicted RBP25.95■■□□□ 1.74
PTPRF-207ENST00000436724 SLC4A3P48751 1232 aa25.95■■□□□ 1.74
PTPRF-207ENST00000436724 G3BP1Q13283 466 aaKnown RBP eCLIP25.95■■□□□ 1.74
PTPRF-207ENST00000436724 KCNQ4P56696 695 aa25.95■■□□□ 1.74
PTPRF-207ENST00000436724 DZIP3Q86Y13 1208 aaKnown RBP25.95■■□□□ 1.74
PTPRF-207ENST00000436724 CCDC87Q9NVE4 849 aa25.95■■□□□ 1.74
PTPRF-207ENST00000436724 PTPN12Q05209 780 aaKnown RBP25.93■■□□□ 1.74
PTPRF-207ENST00000436724 ERC1Q8IUD2 1116 aa25.93■■□□□ 1.74
PTPRF-207ENST00000436724 CLASRPQ8N2M8 674 aaKnown RBP25.93■■□□□ 1.74
PTPRF-207ENST00000436724 SMARCC1Q92922 1105 aaPredicted RBP25.93■■□□□ 1.74
PTPRF-207ENST00000436724 CHMP3Q9Y3E7 222 aa25.93■■□□□ 1.74
PTPRF-207ENST00000436724 EP400Q96L91 3159 aa25.93■■□□□ 1.74
PTPRF-207ENST00000436724 MYH14Q7Z406 1995 aaKnown RBP25.93■■□□□ 1.74
PTPRF-207ENST00000436724 TUBGCP6Q96RT7 1819 aa25.93■■□□□ 1.74
PTPRF-207ENST00000436724 EIF5P55010 431 aaKnown RBP25.92■■□□□ 1.74
PTPRF-207ENST00000436724 TRIM28Q13263 835 aaKnown RBP25.92■■□□□ 1.74
PTPRF-207ENST00000436724 FAM89AQ96GI7 184 aa25.92■■□□□ 1.74
PTPRF-207ENST00000436724 ATRNO75882 1429 aa25.91■■□□□ 1.74
PTPRF-207ENST00000436724 PI4K2BQ8TCG2 481 aa25.91■■□□□ 1.74
PTPRF-207ENST00000436724 COPRSQ9NQ92 184 aa25.91■■□□□ 1.74
PTPRF-207ENST00000436724 TRPC5Q9UL62 973 aaPredicted RBP25.91■■□□□ 1.74
PTPRF-207ENST00000436724 TRIM6-TRIM34B2RNG4 842 aa25.9■■□□□ 1.74
PTPRF-207ENST00000436724 SYNE4Q8N205 404 aa25.9■■□□□ 1.74
PTPRF-207ENST00000436724 RILPL2Q969X0 211 aa25.9■■□□□ 1.74
PTPRF-207ENST00000436724 MAP4K4O95819 1239 aaPredicted RBP25.89■■□□□ 1.74
PTPRF-207ENST00000436724 AACSQ86V21 672 aa25.89■■□□□ 1.74
PTPRF-207ENST00000436724 NLRP10Q86W26 655 aa25.89■■□□□ 1.74
PTPRF-207ENST00000436724 EAF2Q96CJ1 260 aaPredicted RBP25.89■■□□□ 1.74
PTPRF-207ENST00000436724 AOX1Q06278 1338 aa25.89■■□□□ 1.74
PTPRF-207ENST00000436724 NUP98P52948 1817 aa25.89■■□□□ 1.74
PTPRF-207ENST00000436724 SEPT12Q8IYM1 358 aa25.88■■□□□ 1.73
PTPRF-207ENST00000436724 QTRT2Q9H974 415 aaKnown RBP25.88■■□□□ 1.73
PTPRF-207ENST00000436724 ERVV-1B6SEH8 477 aa25.87■■□□□ 1.73
PTPRF-207ENST00000436724 ONECUT3O60422 494 aaPredicted RBP25.87■■□□□ 1.73
PTPRF-207ENST00000436724 PCCAP05165 728 aaPredicted RBP25.87■■□□□ 1.73
PTPRF-207ENST00000436724 IFIT2P09913 472 aaKnown RBP25.87■■□□□ 1.73
PTPRF-207ENST00000436724 LINC00116Q8NCU8 138 aa25.87■■□□□ 1.73
PTPRF-207ENST00000436724 CICQ96RK0 1608 aaPredicted RBP25.87■■□□□ 1.73
PTPRF-207ENST00000436724 HSP90AB3PQ58FF7 597 aa25.86■■□□□ 1.73
PTPRF-207ENST00000436724 ZBTB38Q8NAP3 1195 aaPredicted RBP25.86■■□□□ 1.73
PTPRF-207ENST00000436724 CCDC8Q9H0W5 538 aaPredicted RBP25.86■■□□□ 1.73
PTPRF-207ENST00000436724 TLR7Q9NYK1 1049 aaKnown RBP25.86■■□□□ 1.73
PTPRF-207ENST00000436724 BTAF1O14981 1849 aa25.86■■□□□ 1.73
PTPRF-207ENST00000436724 ANKRD36CQ5JPF3 1778 aa25.86■■□□□ 1.73
PTPRF-207ENST00000436724 COL5A3P25940 1745 aaPredicted RBP25.85■■□□□ 1.73
PTPRF-207ENST00000436724 RREB1Q92766 1687 aa25.85■■□□□ 1.73
PTPRF-207ENST00000436724 UBN2Q6ZU65 1347 aa25.85■■□□□ 1.73
PTPRF-207ENST00000436724 CCDC85AQ96PX6 553 aaPredicted RBP25.85■■□□□ 1.73
PTPRF-207ENST00000436724 RBM25P49756 843 aaKnown RBP25.85■■□□□ 1.73
PTPRF-207ENST00000436724 CASC1Q6TDU7 716 aa25.85■■□□□ 1.73
PTPRF-207ENST00000436724 ZNF594Q96JF6 807 aaPredicted RBP25.85■■□□□ 1.73
PTPRF-207ENST00000436724 USP42Q9H9J4 1324 aaKnown RBP25.84■■□□□ 1.73
PTPRF-207ENST00000436724 TFCP2Q12800 502 aa25.84■■□□□ 1.73
PTPRF-207ENST00000436724 NHSQ6T4R5 1651 aa25.83■■□□□ 1.73
PTPRF-207ENST00000436724 TTC41PQ6P2S7 1318 aa25.83■■□□□ 1.73
PTPRF-207ENST00000436724 ECHDC1Q9NTX5 307 aa25.83■■□□□ 1.73
PTPRF-207ENST00000436724 CAMTA2O94983 1202 aa25.82■■□□□ 1.72
PTPRF-207ENST00000436724 SMIM5Q71RC9 77 aa25.82■■□□□ 1.72
PTPRF-207ENST00000436724 ZNF34Q8IZ26 560 aa25.82■■□□□ 1.72
PTPRF-207ENST00000436724 DAXXQ9UER7 740 aaPredicted RBP25.82■■□□□ 1.72
PTPRF-207ENST00000436724 TRMT112Q9UI30 125 aaKnown RBP25.82■■□□□ 1.72
PTPRF-207ENST00000436724 ATG9AQ7Z3C6 839 aa25.8■■□□□ 1.72
PTPRF-207ENST00000436724 GLRX3O76003 335 aaKnown RBP25.8■■□□□ 1.72
PTPRF-207ENST00000436724 CHMLP26374 656 aa25.8■■□□□ 1.72
PTPRF-207ENST00000436724 ZNF831Q5JPB2 1677 aa25.8■■□□□ 1.72
PTPRF-207ENST00000436724 LRRC24Q50LG9 513 aa25.79■■□□□ 1.72
PTPRF-207ENST00000436724 PLA2G12BQ9BX93 195 aa25.79■■□□□ 1.72
PTPRF-207ENST00000436724 FAM177BA6PVY3 158 aa25.79■■□□□ 1.72
PTPRF-207ENST00000436724 GPATCH3Q96I76 525 aa25.79■■□□□ 1.72
PTPRF-207ENST00000436724 SBF2Q86WG5 1849 aa25.78■■□□□ 1.72
PTPRF-207ENST00000436724 CDHR2Q9BYE9 1310 aa25.78■■□□□ 1.72
PTPRF-207ENST00000436724 ERC2O15083 957 aa25.78■■□□□ 1.72
PTPRF-207ENST00000436724 TNNI3KQ59H18 835 aa25.78■■□□□ 1.72
PTPRF-207ENST00000436724 KIF2CQ99661 725 aa25.78■■□□□ 1.72
PTPRF-207ENST00000436724 USP26Q9BXU7 913 aa25.78■■□□□ 1.72
PTPRF-207ENST00000436724 PUS3Q9BZE2 481 aaKnown RBP25.78■■□□□ 1.72
PTPRF-207ENST00000436724 FPGT-TNNI3KV9GXZ4 949 aa25.78■■□□□ 1.72
PTPRF-207ENST00000436724 AK9Q5TCS8 1911 aa25.78■■□□□ 1.72
PTPRF-207ENST00000436724 CCDC57Q2TAC2 916 aa25.78■■□□□ 1.72
PTPRF-207ENST00000436724 IRS4O14654 1257 aaPredicted RBP25.77■■□□□ 1.72
PTPRF-207ENST00000436724 CSF1RP07333 972 aa25.77■■□□□ 1.72
PTPRF-207ENST00000436724 SUSD4Q5VX71 490 aa25.76■■□□□ 1.71
PTPRF-207ENST00000436724 ESYT1Q9BSJ8 1104 aa25.76■■□□□ 1.71
PTPRF-207ENST00000436724 DBNLQ9UJU6 430 aaKnown RBP25.76■■□□□ 1.71
PTPRF-207ENST00000436724 CNTROBQ8N137 903 aa25.76■■□□□ 1.71
PTPRF-207ENST00000436724 TBC1D2Q9BYX2 928 aa25.76■■□□□ 1.71
PTPRF-207ENST00000436724 CCNL1Q9UK58 526 aaPredicted RBP25.76■■□□□ 1.71
PTPRF-207ENST00000436724 EYA2O00167 538 aa25.75■■□□□ 1.71
PTPRF-207ENST00000436724 IL25Q9H293 177 aa25.75■■□□□ 1.71
PTPRF-207ENST00000436724 TTLL11Q8NHH1 800 aa25.75■■□□□ 1.71
PTPRF-207ENST00000436724 GREM2Q9H772 168 aa25.74■■□□□ 1.71
PTPRF-207ENST00000436724 CNTNAP4Q9C0A0 1308 aa25.74■■□□□ 1.71
PTPRF-207ENST00000436724 REC8O95072 547 aa25.73■■□□□ 1.71
PTPRF-207ENST00000436724 CTSWP56202 376 aa25.73■■□□□ 1.71
PTPRF-207ENST00000436724 BECN1Q14457 450 aa25.73■■□□□ 1.71
PTPRF-207ENST00000436724 BOLA2Q9H3K6 86 aa25.73■■□□□ 1.71
PTPRF-207ENST00000436724 NIP7Q9Y221 180 aaKnown RBP eCLIP25.73■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms