RNA–Protein interactions for RNA: ENST00000436336.6

CPSF4-204, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CPSF4, Length 1,738 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-204ENST00000436336 H7C1W4 665 aa28.81■■■□□ 2.2
CPSF4-204ENST00000436336 GPTP24298 496 aa28.81■■■□□ 2.2
CPSF4-204ENST00000436336 USPL1Q5W0Q7 1092 aa28.81■■■□□ 2.2
CPSF4-204ENST00000436336 CEP85Q6P2H3 762 aa28.81■■■□□ 2.2
CPSF4-204ENST00000436336 ANKRD44Q8N8A2 993 aa28.81■■■□□ 2.2
CPSF4-204ENST00000436336 DEFB132Q7Z7B7 95 aa28.8■■■□□ 2.2
CPSF4-204ENST00000436336 KDM2BQ8NHM5 1336 aa28.8■■■□□ 2.2
CPSF4-204ENST00000436336 IGHDP01880 384 aa28.8■■■□□ 2.2
CPSF4-204ENST00000436336 BCL2L12Q9HB09 334 aa28.8■■■□□ 2.2
CPSF4-204ENST00000436336 TFCP2L1Q9NZI6 479 aa28.8■■■□□ 2.2
CPSF4-204ENST00000436336 SRP68Q9UHB9 627 aaKnown RBP28.8■■■□□ 2.2
CPSF4-204ENST00000436336 UBN2Q6ZU65 1347 aa28.79■■■□□ 2.2
CPSF4-204ENST00000436336 CASP7P55210 303 aa28.79■■■□□ 2.2
CPSF4-204ENST00000436336 PARP10Q53GL7 1025 aa28.79■■■□□ 2.2
CPSF4-204ENST00000436336 CENPQQ7L2Z9 268 aaPredicted RBP28.79■■■□□ 2.2
CPSF4-204ENST00000436336 UBE3BQ7Z3V4 1068 aa28.79■■■□□ 2.2
CPSF4-204ENST00000436336 COL24A1Q17RW2 1714 aa28.79■■■□□ 2.2
CPSF4-204ENST00000436336 SIRT2Q8IXJ6 389 aa28.78■■■□□ 2.2
CPSF4-204ENST00000436336 PCCAP05165 728 aaPredicted RBP28.77■■■□□ 2.2
CPSF4-204ENST00000436336 SUCLG2Q96I99 432 aa28.77■■■□□ 2.2
CPSF4-204ENST00000436336 NIP7Q9Y221 180 aaKnown RBP eCLIP28.77■■■□□ 2.2
CPSF4-204ENST00000436336 ZBTB38Q8NAP3 1195 aaPredicted RBP28.77■■■□□ 2.2
CPSF4-204ENST00000436336 FLAD1Q8NFF5 587 aa28.77■■■□□ 2.2
CPSF4-204ENST00000436336 MYH3P11055 1940 aa28.77■■■□□ 2.2
CPSF4-204ENST00000436336 ATP8B2P98198 1209 aa28.75■■■□□ 2.19
CPSF4-204ENST00000436336 KAZALD1Q96I82 304 aa28.75■■■□□ 2.19
CPSF4-204ENST00000436336 JARID2Q92833 1246 aaPredicted RBP28.74■■■□□ 2.19
CPSF4-204ENST00000436336 LAMB2P55268 1798 aa28.74■■■□□ 2.19
CPSF4-204ENST00000436336 HMMRO75330 724 aa28.74■■■□□ 2.19
CPSF4-204ENST00000436336 TBC1D9BQ66K14 1250 aa28.73■■■□□ 2.19
CPSF4-204ENST00000436336 PPP1R42Q7Z4L9 355 aa28.73■■■□□ 2.19
CPSF4-204ENST00000436336 STK32BQ9NY57 414 aa28.73■■■□□ 2.19
CPSF4-204ENST00000436336 TRMT112Q9UI30 125 aaKnown RBP28.73■■■□□ 2.19
CPSF4-204ENST00000436336 CDHR2Q9BYE9 1310 aa28.73■■■□□ 2.19
CPSF4-204ENST00000436336 MTX1Q13505 466 aa28.72■■■□□ 2.19
CPSF4-204ENST00000436336 SLC15A2Q16348 729 aa28.72■■■□□ 2.19
CPSF4-204ENST00000436336 SUSD4Q5VX71 490 aa28.72■■■□□ 2.19
CPSF4-204ENST00000436336 BICC1Q9H694 974 aaKnown RBP28.72■■■□□ 2.19
CPSF4-204ENST00000436336 RTL5Q5HYW3 569 aaPredicted RBP28.72■■■□□ 2.19
CPSF4-204ENST00000436336 FAM89AQ96GI7 184 aa28.72■■■□□ 2.19
CPSF4-204ENST00000436336 UTP14AQ9BVJ6 771 aaKnown RBP28.72■■■□□ 2.19
CPSF4-204ENST00000436336 ANO8Q9HCE9 1232 aaPredicted RBP28.72■■■□□ 2.19
CPSF4-204ENST00000436336 DDX60Q8IY21 1712 aaKnown RBP28.7■■■□□ 2.19
CPSF4-204ENST00000436336 GYS1P13807 737 aa28.7■■■□□ 2.19
CPSF4-204ENST00000436336 COL23A1Q86Y22 540 aaPredicted RBP28.7■■■□□ 2.19
CPSF4-204ENST00000436336 SETDB2Q96T68 719 aa28.7■■■□□ 2.19
CPSF4-204ENST00000436336 PNPLA7Q6ZV29 1317 aa28.7■■■□□ 2.18
CPSF4-204ENST00000436336 PNMA6EA0A0J9YXQ4 647 aa28.69■■■□□ 2.18
CPSF4-204ENST00000436336 NTSR2O95665 410 aa28.69■■■□□ 2.18
CPSF4-204ENST00000436336 RABL6Q3YEC7 729 aaPredicted RBP28.69■■■□□ 2.18
CPSF4-204ENST00000436336 EPHA10Q5JZY3 1008 aa28.69■■■□□ 2.18
CPSF4-204ENST00000436336 BICDL1Q6ZP65 573 aa28.69■■■□□ 2.18
CPSF4-204ENST00000436336 SSH3Q8TE77 659 aa28.69■■■□□ 2.18
CPSF4-204ENST00000436336 UPF1Q92900 1129 aaKnown RBP eCLIP28.69■■■□□ 2.189e-7■■■■□ 23.4
CPSF4-204ENST00000436336 PLA2G12BQ9BX93 195 aa28.69■■■□□ 2.18
CPSF4-204ENST00000436336 SH3TC1Q8TE82 1336 aa28.68■■■□□ 2.18
CPSF4-204ENST00000436336 SMC5Q8IY18 1101 aa28.68■■■□□ 2.18
CPSF4-204ENST00000436336 GCC1Q96CN9 775 aa28.68■■■□□ 2.18
CPSF4-204ENST00000436336 SRGAP3O43295 1099 aa28.67■■■□□ 2.18
CPSF4-204ENST00000436336 FOXO4P98177 505 aa28.67■■■□□ 2.18
CPSF4-204ENST00000436336 POLA2Q14181 598 aa28.67■■■□□ 2.18
CPSF4-204ENST00000436336 CASZ1Q86V15 1759 aa28.67■■■□□ 2.18
CPSF4-204ENST00000436336 DCTPP1Q9H773 170 aa28.66■■■□□ 2.18
CPSF4-204ENST00000436336 FAM177BA6PVY3 158 aa28.66■■■□□ 2.18
CPSF4-204ENST00000436336 IRS4O14654 1257 aaPredicted RBP28.65■■■□□ 2.18
CPSF4-204ENST00000436336 CARMIL3Q8ND23 1372 aa28.65■■■□□ 2.18
CPSF4-204ENST00000436336 NYXQ9GZU5 481 aa28.65■■■□□ 2.18
CPSF4-204ENST00000436336 MSH5O43196 834 aa28.64■■■□□ 2.18
CPSF4-204ENST00000436336 NFIXQ14938 502 aa28.64■■■□□ 2.18
CPSF4-204ENST00000436336 SYNE4Q8N205 404 aa28.64■■■□□ 2.18
CPSF4-204ENST00000436336 HSP90B1P14625 803 aaKnown RBP28.63■■■□□ 2.17
CPSF4-204ENST00000436336 PDE8AO60658 829 aa28.62■■■□□ 2.17
CPSF4-204ENST00000436336 LMBR1LQ6UX01 489 aa28.62■■■□□ 2.17
CPSF4-204ENST00000436336 NLGN1Q8N2Q7 840 aa28.61■■■□□ 2.17
CPSF4-204ENST00000436336 TM4SF1P30408 202 aa28.6■■■□□ 2.17
CPSF4-204ENST00000436336 TPTE2Q6XPS3 522 aa28.6■■■□□ 2.17
CPSF4-204ENST00000436336 NBPF5PQ86XG9 351 aaPredicted RBP28.6■■■□□ 2.17
CPSF4-204ENST00000436336 NUTM1Q86Y26 1132 aa28.6■■■□□ 2.17
CPSF4-204ENST00000436336 CSF1RP07333 972 aa28.59■■■□□ 2.17
CPSF4-204ENST00000436336 GTF2E1P29083 439 aaPredicted RBP28.58■■■□□ 2.17
CPSF4-204ENST00000436336 CTSWP56202 376 aa28.57■■■□□ 2.16
CPSF4-204ENST00000436336 ERFEQ4G0M1 354 aa28.57■■■□□ 2.16
CPSF4-204ENST00000436336 CHMP3Q9Y3E7 222 aa28.57■■■□□ 2.16
CPSF4-204ENST00000436336 SLC10A5Q5PT55 438 aa28.57■■■□□ 2.16
CPSF4-204ENST00000436336 NRXN2Q9P2S2 1712 aa28.57■■■□□ 2.16
CPSF4-204ENST00000436336 HCLS1P14317 486 aaPredicted RBP28.56■■■□□ 2.16
CPSF4-204ENST00000436336 TTLL11Q8NHH1 800 aa28.56■■■□□ 2.16
CPSF4-204ENST00000436336 PDZRN3Q9UPQ7 1066 aa28.56■■■□□ 2.16
CPSF4-204ENST00000436336 NOP58Q9Y2X3 529 aaKnown RBP28.56■■■□□ 2.16
CPSF4-204ENST00000436336 SURF6O75683 361 aaKnown RBP28.55■■■□□ 2.16
CPSF4-204ENST00000436336 RFX5P48382 616 aaPredicted RBP28.55■■■□□ 2.16
CPSF4-204ENST00000436336 EXOC6BQ9Y2D4 811 aa28.55■■■□□ 2.16
CPSF4-204ENST00000436336 NUCB1Q02818 461 aa28.55■■■□□ 2.16
CPSF4-204ENST00000436336 HSP90AB4PQ58FF6 505 aa28.55■■■□□ 2.16
CPSF4-204ENST00000436336 ABCC12Q96J65 1359 aa28.54■■■□□ 2.16
CPSF4-204ENST00000436336 COPRSQ9NQ92 184 aa28.54■■■□□ 2.16
CPSF4-204ENST00000436336 POLRMTO00411 1230 aaKnown RBP28.53■■■□□ 2.16
CPSF4-204ENST00000436336 SERPINB2P05120 415 aa28.53■■■□□ 2.16
CPSF4-204ENST00000436336 ANKRD45Q5TZF3 282 aa28.53■■■□□ 2.16
CPSF4-204ENST00000436336 CNBD1Q8NA66 436 aa28.53■■■□□ 2.16
Retrieved 100 of 20,778 RNA–protein pairs in 151.5 ms