RNA–Protein interactions for RNA: ENST00000435455.5

SMPD4-207, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 5

Gene SMPD4, Length 842 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-207ENST00000435455 ZNF521Q96K83 1311 aa20.92■□□□□ 0.94
SMPD4-207ENST00000435455 DDX58O95786 925 aaKnown RBP20.91■□□□□ 0.94
SMPD4-207ENST00000435455 TNRC6CQ9HCJ0 1690 aaKnown RBP20.91■□□□□ 0.94
SMPD4-207ENST00000435455 SLX4Q8IY92 1834 aa20.9■□□□□ 0.94
SMPD4-207ENST00000435455 EXOSC9Q06265 439 aaKnown RBP20.9■□□□□ 0.94
SMPD4-207ENST00000435455 RIC3Q7Z5B4 369 aa20.9■□□□□ 0.94
SMPD4-207ENST00000435455 SPINK5Q9NQ38 1064 aaPredicted RBP20.9■□□□□ 0.94
SMPD4-207ENST00000435455 ADCY9O60503 1353 aa20.89■□□□□ 0.93
SMPD4-207ENST00000435455 PRPF40BQ6NWY9 871 aaKnown RBP20.89■□□□□ 0.93
SMPD4-207ENST00000435455 SBF1O95248 1867 aa20.88■□□□□ 0.93
SMPD4-207ENST00000435455 ALDH1B1P30837 517 aa20.88■□□□□ 0.93
SMPD4-207ENST00000435455 TRIM28Q13263 835 aaKnown RBP20.88■□□□□ 0.93
SMPD4-207ENST00000435455 CRY2Q49AN0 593 aa20.88■□□□□ 0.93
SMPD4-207ENST00000435455 SLC10A5Q5PT55 438 aa20.88■□□□□ 0.93
SMPD4-207ENST00000435455 ISCA1Q9BUE6 129 aa20.88■□□□□ 0.93
SMPD4-207ENST00000435455 TRMT112Q9UI30 125 aaKnown RBP20.88■□□□□ 0.93
SMPD4-207ENST00000435455 C21orf2O43822 256 aa20.87■□□□□ 0.93
SMPD4-207ENST00000435455 VAMP4O75379 141 aa20.87■□□□□ 0.93
SMPD4-207ENST00000435455 SOGA3Q5TF21 947 aa20.87■□□□□ 0.93
SMPD4-207ENST00000435455 SH3TC1Q8TE82 1336 aa20.86■□□□□ 0.93
SMPD4-207ENST00000435455 ATP5J2-PTCD1G3V325 749 aa20.86■□□□□ 0.93
SMPD4-207ENST00000435455 TCERG1O14776 1098 aaKnown RBP20.86■□□□□ 0.93
SMPD4-207ENST00000435455 SLC4A2P04920 1241 aa20.86■□□□□ 0.93
SMPD4-207ENST00000435455 MIER1Q8N108 512 aa20.86■□□□□ 0.93
SMPD4-207ENST00000435455 RPGRQ92834 1020 aaKnown RBP20.86■□□□□ 0.93
SMPD4-207ENST00000435455 NLRP3Q96P20 1036 aa20.86■□□□□ 0.93
SMPD4-207ENST00000435455 FER1L6Q2WGJ9 1857 aa20.86■□□□□ 0.93
SMPD4-207ENST00000435455 E9PSI1 815 aa20.85■□□□□ 0.93
SMPD4-207ENST00000435455 HOXA10P31260 410 aaPredicted RBP20.85■□□□□ 0.93
SMPD4-207ENST00000435455 C9orf131Q5VYM1 1079 aa20.85■□□□□ 0.93
SMPD4-207ENST00000435455 ZNF219Q9P2Y4 722 aaPredicted RBP20.85■□□□□ 0.93
SMPD4-207ENST00000435455 KSR2Q6VAB6 950 aa20.84■□□□□ 0.93
SMPD4-207ENST00000435455 RBM17Q96I25 401 aaKnown RBP20.84■□□□□ 0.93
SMPD4-207ENST00000435455 CCDC88AQ3V6T2 1871 aa20.84■□□□□ 0.93
SMPD4-207ENST00000435455 LAMB2P55268 1798 aa20.83■□□□□ 0.93
SMPD4-207ENST00000435455 NFKBIEO00221 500 aa20.83■□□□□ 0.93
SMPD4-207ENST00000435455 LMNB1P20700 586 aa20.83■□□□□ 0.93
SMPD4-207ENST00000435455 RASSF7Q02833 373 aa20.83■□□□□ 0.93
SMPD4-207ENST00000435455 MYD88Q99836 296 aa20.83■□□□□ 0.93
SMPD4-207ENST00000435455 METTL22Q9BUU2 404 aaPredicted RBP20.83■□□□□ 0.93
SMPD4-207ENST00000435455 RNF181Q9P0P0 153 aa20.83■□□□□ 0.93
SMPD4-207ENST00000435455 PI4KAP2A4QPH2 592 aa20.82■□□□□ 0.92
SMPD4-207ENST00000435455 HCLS1P14317 486 aaPredicted RBP20.82■□□□□ 0.92
SMPD4-207ENST00000435455 PI4KAP1Q8N8J0 262 aa20.82■□□□□ 0.92
SMPD4-207ENST00000435455 CCDC191Q8NCU4 936 aa20.82■□□□□ 0.92
SMPD4-207ENST00000435455 C7orf43Q8WVR3 580 aa20.82■□□□□ 0.92
SMPD4-207ENST00000435455 CRAMP1Q96RY5 1269 aa20.82■□□□□ 0.92
SMPD4-207ENST00000435455 MAP3K2Q9Y2U5 619 aa20.82■□□□□ 0.92
SMPD4-207ENST00000435455 LTBP3Q9NS15 1303 aa20.81■□□□□ 0.92
SMPD4-207ENST00000435455 FLIIQ13045 1269 aa20.81■□□□□ 0.92
SMPD4-207ENST00000435455 CCDC93Q567U6 631 aa20.81■□□□□ 0.92
SMPD4-207ENST00000435455 G2E3Q7L622 706 aa20.81■□□□□ 0.92
SMPD4-207ENST00000435455 SYNE4Q8N205 404 aa20.81■□□□□ 0.92
SMPD4-207ENST00000435455 DDX60Q8IY21 1712 aaKnown RBP20.81■□□□□ 0.92
SMPD4-207ENST00000435455 HSP90B1P14625 803 aaKnown RBP20.8■□□□□ 0.92
SMPD4-207ENST00000435455 SLFN5Q08AF3 891 aa20.8■□□□□ 0.92
SMPD4-207ENST00000435455 NEXNQ0ZGT2 675 aa20.8■□□□□ 0.92
SMPD4-207ENST00000435455 C3orf67Q6ZVT6 689 aa20.8■□□□□ 0.92
SMPD4-207ENST00000435455 FAM89AQ96GI7 184 aa20.8■□□□□ 0.92
SMPD4-207ENST00000435455 ZC3H4Q9UPT8 1303 aaKnown RBP20.79■□□□□ 0.92
SMPD4-207ENST00000435455 DICER1Q9UPY3 1922 aaKnown RBP20.79■□□□□ 0.92
SMPD4-207ENST00000435455 CWC25Q9NXE8 425 aaPredicted RBP20.79■□□□□ 0.92
SMPD4-207ENST00000435455 PCCAP05165 728 aaPredicted RBP20.78■□□□□ 0.92
SMPD4-207ENST00000435455 FKBP5Q13451 457 aaPredicted RBP20.78■□□□□ 0.92
SMPD4-207ENST00000435455 CC2D2BQ6DHV5 1058 aa20.78■□□□□ 0.92
SMPD4-207ENST00000435455 RTKN2Q8IZC4 609 aa20.78■□□□□ 0.92
SMPD4-207ENST00000435455 ZBTB38Q8NAP3 1195 aaPredicted RBP20.78■□□□□ 0.92
SMPD4-207ENST00000435455 ZNF428Q96B54 188 aa20.78■□□□□ 0.92
SMPD4-207ENST00000435455 TAOK3Q9H2K8 898 aa20.78■□□□□ 0.92
SMPD4-207ENST00000435455 GPBP1L1Q9HC44 474 aaPredicted RBP20.78■□□□□ 0.92
SMPD4-207ENST00000435455 TIAM2Q8IVF5 1701 aa20.76■□□□□ 0.91
SMPD4-207ENST00000435455 IRS4O14654 1257 aaPredicted RBP20.76■□□□□ 0.91
SMPD4-207ENST00000435455 GRIPAP1Q4V328 841 aa20.76■□□□□ 0.91
SMPD4-207ENST00000435455 RTL5Q5HYW3 569 aaPredicted RBP20.76■□□□□ 0.91
SMPD4-207ENST00000435455 DDX46Q7L014 1031 aaKnown RBP20.76■□□□□ 0.91
SMPD4-207ENST00000435455 ZNF526Q8TF50 670 aaPredicted RBP20.76■□□□□ 0.91
SMPD4-207ENST00000435455 PPEF1O14829 653 aaPredicted RBP20.75■□□□□ 0.91
SMPD4-207ENST00000435455 IGKV5-2P06315 115 aa20.75■□□□□ 0.91
SMPD4-207ENST00000435455 PRELPP51888 382 aa20.75■□□□□ 0.91
SMPD4-207ENST00000435455 FKBP4Q02790 459 aaKnown RBP eCLIP20.75■□□□□ 0.91
SMPD4-207ENST00000435455 DNAAF4Q8WXU2 420 aa20.75■□□□□ 0.91
SMPD4-207ENST00000435455 ABCC4O15439 1325 aa20.75■□□□□ 0.91
SMPD4-207ENST00000435455 BBOX1O75936 387 aa20.74■□□□□ 0.91
SMPD4-207ENST00000435455 SF3B3Q15393 1217 aaKnown RBP20.74■□□□□ 0.91
SMPD4-207ENST00000435455 TMX4Q9H1E5 349 aaPredicted RBP20.74■□□□□ 0.91
SMPD4-207ENST00000435455 NEURL1BA8MQ27 555 aa20.73■□□□□ 0.91
SMPD4-207ENST00000435455 OLFM4Q6UX06 510 aa20.73■□□□□ 0.91
SMPD4-207ENST00000435455 TRMT2AQ8IZ69 625 aaKnown RBP20.73■□□□□ 0.91
SMPD4-207ENST00000435455 CDCA7LQ96GN5 454 aa20.73■□□□□ 0.91
SMPD4-207ENST00000435455 GRAPQ13588 217 aa20.72■□□□□ 0.91
SMPD4-207ENST00000435455 TMC4Q7Z404 712 aa20.72■□□□□ 0.91
SMPD4-207ENST00000435455 GRAPLQ8TC17 118 aaPredicted RBP20.72■□□□□ 0.91
SMPD4-207ENST00000435455 PSMD1Q99460 953 aa20.72■□□□□ 0.91
SMPD4-207ENST00000435455 ATP6V0A2Q9Y487 856 aa20.72■□□□□ 0.91
SMPD4-207ENST00000435455 KDM2BQ8NHM5 1336 aa20.72■□□□□ 0.91
SMPD4-207ENST00000435455 CDHR2Q9BYE9 1310 aa20.72■□□□□ 0.91
SMPD4-207ENST00000435455 SNED1Q8TER0 1413 aa20.71■□□□□ 0.91
SMPD4-207ENST00000435455 TAF1P21675 1872 aa20.71■□□□□ 0.91
SMPD4-207ENST00000435455 PDE8AO60658 829 aa20.71■□□□□ 0.91
SMPD4-207ENST00000435455 CWF19L2Q2TBE0 894 aaKnown RBP20.71■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms