RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 MAP3K2Q9Y2U5 619 aa23.91■■□□□ 1.42
SHH-203ENST00000435425 TRMT112Q9UI30 125 aaKnown RBP23.9■■□□□ 1.42
SHH-203ENST00000435425 PDZRN3Q9UPQ7 1066 aa23.9■■□□□ 1.42
SHH-203ENST00000435425 IBTKQ9P2D0 1353 aaPredicted RBP23.9■■□□□ 1.42
SHH-203ENST00000435425 TNRC6CQ9HCJ0 1690 aaKnown RBP23.89■■□□□ 1.42
SHH-203ENST00000435425 ARFGEF1Q9Y6D6 1849 aa23.89■■□□□ 1.42
SHH-203ENST00000435425 PI4KAP2A4QPH2 592 aa23.89■■□□□ 1.41
SHH-203ENST00000435425 KSR2Q6VAB6 950 aa23.89■■□□□ 1.41
SHH-203ENST00000435425 PI4KAP1Q8N8J0 262 aa23.89■■□□□ 1.41
SHH-203ENST00000435425 ISCA1Q9BUE6 129 aa23.89■■□□□ 1.41
SHH-203ENST00000435425 FLIIQ13045 1269 aa23.88■■□□□ 1.41
SHH-203ENST00000435425 TTLL6Q8N841 843 aa23.88■■□□□ 1.41
SHH-203ENST00000435425 SRGNP10124 158 aa23.87■■□□□ 1.41
SHH-203ENST00000435425 FKBP5Q13451 457 aaPredicted RBP23.87■■□□□ 1.41
SHH-203ENST00000435425 ARHGAP27Q6ZUM4 889 aa23.87■■□□□ 1.41
SHH-203ENST00000435425 TRMT2AQ8IZ69 625 aaKnown RBP23.87■■□□□ 1.41
SHH-203ENST00000435425 SYNE4Q8N205 404 aa23.87■■□□□ 1.41
SHH-203ENST00000435425 MASTLQ96GX5 879 aa23.87■■□□□ 1.41
SHH-203ENST00000435425 METTL22Q9BUU2 404 aaPredicted RBP23.87■■□□□ 1.41
SHH-203ENST00000435425 ZNF219Q9P2Y4 722 aaPredicted RBP23.87■■□□□ 1.41
SHH-203ENST00000435425 RTL5Q5HYW3 569 aaPredicted RBP23.86■■□□□ 1.41
SHH-203ENST00000435425 ADCY9O60503 1353 aa23.86■■□□□ 1.41
SHH-203ENST00000435425 STYK1Q6J9G0 422 aa23.85■■□□□ 1.41
SHH-203ENST00000435425 SH3TC1Q8TE82 1336 aa23.84■■□□□ 1.41
SHH-203ENST00000435425 HCLS1P14317 486 aaPredicted RBP23.84■■□□□ 1.41
SHH-203ENST00000435425 NPR1P16066 1061 aa23.84■■□□□ 1.41
SHH-203ENST00000435425 YY1P25490 414 aa23.84■■□□□ 1.41
SHH-203ENST00000435425 CNKSR1Q969H4 720 aa23.84■■□□□ 1.41
SHH-203ENST00000435425 FAM89AQ96GI7 184 aa23.84■■□□□ 1.41
SHH-203ENST00000435425 SLX4Q8IY92 1834 aa23.84■■□□□ 1.41
SHH-203ENST00000435425 KLRG2A4D1S0 409 aaPredicted RBP23.83■■□□□ 1.41
SHH-203ENST00000435425 NEXNQ0ZGT2 675 aa23.83■■□□□ 1.41
SHH-203ENST00000435425 C3orf67Q6ZVT6 689 aa23.83■■□□□ 1.41
SHH-203ENST00000435425 NLRP3Q96P20 1036 aa23.83■■□□□ 1.41
SHH-203ENST00000435425 LAMB2P55268 1798 aa23.83■■□□□ 1.4
SHH-203ENST00000435425 TRIM28Q13263 835 aaKnown RBP23.82■■□□□ 1.4
SHH-203ENST00000435425 SLC10A5Q5PT55 438 aa23.82■■□□□ 1.4
SHH-203ENST00000435425 JARID2Q92833 1246 aaPredicted RBP23.82■■□□□ 1.4
SHH-203ENST00000435425 RPGRQ92834 1020 aaKnown RBP23.82■■□□□ 1.4
SHH-203ENST00000435425 RNF123Q5XPI4 1314 aa23.82■■□□□ 1.4
SHH-203ENST00000435425 BCL2L13Q9BXK5 485 aa23.81■■□□□ 1.4
SHH-203ENST00000435425 CWC25Q9NXE8 425 aaPredicted RBP23.81■■□□□ 1.4
SHH-203ENST00000435425 F6X3S4 739 aa23.8■■□□□ 1.4
SHH-203ENST00000435425 C21orf2O43822 256 aa23.8■■□□□ 1.4
SHH-203ENST00000435425 CWF19L2Q2TBE0 894 aaKnown RBP23.8■■□□□ 1.4
SHH-203ENST00000435425 RIC1Q4ADV7 1423 aa23.8■■□□□ 1.4
SHH-203ENST00000435425 PRPF40BQ6NWY9 871 aaKnown RBP23.8■■□□□ 1.4
SHH-203ENST00000435425 DDX60Q8IY21 1712 aaKnown RBP23.8■■□□□ 1.4
SHH-203ENST00000435425 MRPL50Q8N5N7 158 aaKnown RBP23.8■■□□□ 1.4
SHH-203ENST00000435425 CCDC191Q8NCU4 936 aa23.8■■□□□ 1.4
SHH-203ENST00000435425 DNAAF4Q8WXU2 420 aa23.8■■□□□ 1.4
SHH-203ENST00000435425 SSH1Q8WYL5 1049 aa23.8■■□□□ 1.4
SHH-203ENST00000435425 IGKV5-2P06315 115 aa23.79■■□□□ 1.4
SHH-203ENST00000435425 ALDH1B1P30837 517 aa23.78■■□□□ 1.4
SHH-203ENST00000435425 CRY2Q49AN0 593 aa23.78■■□□□ 1.4
SHH-203ENST00000435425 ZBTB38Q8NAP3 1195 aaPredicted RBP23.78■■□□□ 1.4
SHH-203ENST00000435425 IRS4O14654 1257 aaPredicted RBP23.77■■□□□ 1.4
SHH-203ENST00000435425 RBM17Q96I25 401 aaKnown RBP23.77■■□□□ 1.4
SHH-203ENST00000435425 GOLGB1Q14789 3259 aaKnown RBP23.77■■□□□ 1.4
SHH-203ENST00000435425 NEURL1BA8MQ27 555 aa23.76■■□□□ 1.39
SHH-203ENST00000435425 SMC4Q9NTJ3 1288 aa23.76■■□□□ 1.39
SHH-203ENST00000435425 PCCAP05165 728 aaPredicted RBP23.75■■□□□ 1.39
SHH-203ENST00000435425 RASSF7Q02833 373 aa23.75■■□□□ 1.39
SHH-203ENST00000435425 SLC4A10Q6U841 1118 aa23.75■■□□□ 1.39
SHH-203ENST00000435425 ZBED9Q6R2W3 1325 aa23.75■■□□□ 1.39
SHH-203ENST00000435425 TAF1P21675 1872 aa23.75■■□□□ 1.39
SHH-203ENST00000435425 CT47B1P0C2W7 299 aaPredicted RBP23.74■■□□□ 1.39
SHH-203ENST00000435425 ALDH1L2Q3SY69 923 aa23.74■■□□□ 1.39
SHH-203ENST00000435425 CCDC88AQ3V6T2 1871 aa23.74■■□□□ 1.39
SHH-203ENST00000435425 HOXA10P31260 410 aaPredicted RBP23.73■■□□□ 1.39
SHH-203ENST00000435425 OLFM4Q6UX06 510 aa23.73■■□□□ 1.39
SHH-203ENST00000435425 LINS1Q8NG48 757 aa23.73■■□□□ 1.39
SHH-203ENST00000435425 SBF1O95248 1867 aa23.73■■□□□ 1.39
SHH-203ENST00000435425 CRAMP1Q96RY5 1269 aa23.72■■□□□ 1.39
SHH-203ENST00000435425 FER1L6Q2WGJ9 1857 aa23.71■■□□□ 1.39
SHH-203ENST00000435425 GCKRQ14397 625 aa23.71■■□□□ 1.39
SHH-203ENST00000435425 DDX46Q7L014 1031 aaKnown RBP23.71■■□□□ 1.39
SHH-203ENST00000435425 ABCC4O15439 1325 aa23.7■■□□□ 1.38
SHH-203ENST00000435425 BEND3Q5T5X7 828 aa23.7■■□□□ 1.38
SHH-203ENST00000435425 C9orf131Q5VYM1 1079 aa23.7■■□□□ 1.38
SHH-203ENST00000435425 UBE3BQ7Z3V4 1068 aa23.7■■□□□ 1.38
SHH-203ENST00000435425 C7orf43Q8WVR3 580 aa23.7■■□□□ 1.38
SHH-203ENST00000435425 PTPRCP08575 1304 aa23.69■■□□□ 1.38
SHH-203ENST00000435425 NFKBIEO00221 500 aa23.69■■□□□ 1.38
SHH-203ENST00000435425 PPEF1O14829 653 aaPredicted RBP23.69■■□□□ 1.38
SHH-203ENST00000435425 PDE8AO60658 829 aa23.69■■□□□ 1.38
SHH-203ENST00000435425 HSP90B1P14625 803 aaKnown RBP23.69■■□□□ 1.38
SHH-203ENST00000435425 RARSP54136 660 aaKnown RBP23.69■■□□□ 1.38
SHH-203ENST00000435425 SF3B3Q15393 1217 aaKnown RBP23.69■■□□□ 1.38
SHH-203ENST00000435425 CCDC93Q567U6 631 aa23.69■■□□□ 1.38
SHH-203ENST00000435425 SOGA3Q5TF21 947 aa23.69■■□□□ 1.38
SHH-203ENST00000435425 CCDC85AQ96PX6 553 aaPredicted RBP23.69■■□□□ 1.38
SHH-203ENST00000435425 RNF181Q9P0P0 153 aa23.69■■□□□ 1.38
SHH-203ENST00000435425 UTRNP46939 3433 aa23.69■■□□□ 1.38
SHH-203ENST00000435425 H7C1W4 665 aa23.68■■□□□ 1.38
SHH-203ENST00000435425 SLC51AQ86UW1 340 aa23.68■■□□□ 1.38
SHH-203ENST00000435425 MYH3P11055 1940 aa23.68■■□□□ 1.38
SHH-203ENST00000435425 CDHR2Q9BYE9 1310 aa23.67■■□□□ 1.38
SHH-203ENST00000435425 NOB1Q9ULX3 412 aaKnown RBP23.67■■□□□ 1.38
SHH-203ENST00000435425 SRCIN1Q9C0H9 1055 aa23.66■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms