RNA–Protein interactions for RNA: ENST00000428555.1

TRIM39-208, Transcript of tripartite motif containing 39, humanhuman

TSL 3

Gene TRIM39, Length 459 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-208ENST00000428555 NCBP3Q53F19 620 aaKnown RBP12.25□□□□□ -0.45
TRIM39-208ENST00000428555 SOGA3Q5TF21 947 aa12.25□□□□□ -0.45
TRIM39-208ENST00000428555 RPGRQ92834 1020 aaKnown RBP12.25□□□□□ -0.45
TRIM39-208ENST00000428555 NLRP3Q96P20 1036 aa12.25□□□□□ -0.45
TRIM39-208ENST00000428555 TAOK3Q9H2K8 898 aa12.25□□□□□ -0.45
TRIM39-208ENST00000428555 TRMT112Q9UI30 125 aaKnown RBP12.25□□□□□ -0.45
TRIM39-208ENST00000428555 BRCA1P38398 1863 aaKnown RBP12.25□□□□□ -0.45
TRIM39-208ENST00000428555 TCERG1O14776 1098 aaKnown RBP12.24□□□□□ -0.45
TRIM39-208ENST00000428555 CCDC93Q567U6 631 aa12.24□□□□□ -0.45
TRIM39-208ENST00000428555 CCDC30Q5VVM6 783 aa12.24□□□□□ -0.45
TRIM39-208ENST00000428555 RBM17Q96I25 401 aaKnown RBP12.24□□□□□ -0.45
TRIM39-208ENST00000428555 ISCA1Q9BUE6 129 aa12.24□□□□□ -0.45
TRIM39-208ENST00000428555 CEP350Q5VT06 3117 aa12.24□□□□□ -0.45
TRIM39-208ENST00000428555 ANKRD31Q8N7Z5 1873 aa12.23□□□□□ -0.45
TRIM39-208ENST00000428555 BCORQ6W2J9 1755 aa12.23□□□□□ -0.45
TRIM39-208ENST00000428555 IBTKQ9P2D0 1353 aaPredicted RBP12.23□□□□□ -0.45
TRIM39-208ENST00000428555 KDM2BQ8NHM5 1336 aa12.23□□□□□ -0.45
TRIM39-208ENST00000428555 GLTPD2A6NH11 291 aa12.23□□□□□ -0.45
TRIM39-208ENST00000428555 RIC3Q7Z5B4 369 aa12.23□□□□□ -0.45
TRIM39-208ENST00000428555 RTKN2Q8IZC4 609 aa12.23□□□□□ -0.45
TRIM39-208ENST00000428555 CRAMP1Q96RY5 1269 aa12.23□□□□□ -0.45
TRIM39-208ENST00000428555 LAMB4A4D0S4 1761 aa12.23□□□□□ -0.45
TRIM39-208ENST00000428555 IL16Q14005 1332 aa12.22□□□□□ -0.45
TRIM39-208ENST00000428555 LTBP3Q9NS15 1303 aa12.22□□□□□ -0.45
TRIM39-208ENST00000428555 TOMM70O94826 608 aa12.22□□□□□ -0.45
TRIM39-208ENST00000428555 FKBP4Q02790 459 aaKnown RBP eCLIP12.22□□□□□ -0.45
TRIM39-208ENST00000428555 WDR63Q8IWG1 891 aa12.22□□□□□ -0.45
TRIM39-208ENST00000428555 FAM89AQ96GI7 184 aa12.22□□□□□ -0.45
TRIM39-208ENST00000428555 CHMP4AQ9BY43 222 aa12.22□□□□□ -0.45
TRIM39-208ENST00000428555 ZNF277Q9NRM2 450 aaPredicted RBP12.22□□□□□ -0.45
TRIM39-208ENST00000428555 ARFGEF1Q9Y6D6 1849 aa12.22□□□□□ -0.45
TRIM39-208ENST00000428555 SH3TC1Q8TE82 1336 aa12.21□□□□□ -0.45
TRIM39-208ENST00000428555 ZC3H4Q9UPT8 1303 aaKnown RBP12.21□□□□□ -0.45
TRIM39-208ENST00000428555 GOLGA2Q08379 1002 aa12.21□□□□□ -0.45
TRIM39-208ENST00000428555 TRIM28Q13263 835 aaKnown RBP12.21□□□□□ -0.45
TRIM39-208ENST00000428555 TWISTNBQ3B726 338 aaPredicted RBP12.21□□□□□ -0.45
TRIM39-208ENST00000428555 RTL5Q5HYW3 569 aaPredicted RBP12.21□□□□□ -0.45
TRIM39-208ENST00000428555 DPY19L2Q6NUT2 758 aa12.21□□□□□ -0.45
TRIM39-208ENST00000428555 SLC51AQ86UW1 340 aa12.21□□□□□ -0.45
TRIM39-208ENST00000428555 SLX4Q8IY92 1834 aa12.21□□□□□ -0.46
TRIM39-208ENST00000428555 RNF123Q5XPI4 1314 aa12.2□□□□□ -0.46
TRIM39-208ENST00000428555 SLC4A2P04920 1241 aa12.2□□□□□ -0.46
TRIM39-208ENST00000428555 CC2D2BQ6DHV5 1058 aa12.2□□□□□ -0.46
TRIM39-208ENST00000428555 C16orf71Q8IYS4 520 aaPredicted RBP12.2□□□□□ -0.46
TRIM39-208ENST00000428555 MYD88Q99836 296 aa12.2□□□□□ -0.46
TRIM39-208ENST00000428555 SPINK5Q9NQ38 1064 aaPredicted RBP12.2□□□□□ -0.46
TRIM39-208ENST00000428555 NUP98P52948 1817 aa12.19□□□□□ -0.46
TRIM39-208ENST00000428555 POTECB2RU33 542 aa12.19□□□□□ -0.46
TRIM39-208ENST00000428555 PPEF1O14829 653 aaPredicted RBP12.19□□□□□ -0.46
TRIM39-208ENST00000428555 BBOX1O75936 387 aa12.19□□□□□ -0.46
TRIM39-208ENST00000428555 DDNO94850 711 aaPredicted RBP12.19□□□□□ -0.46
TRIM39-208ENST00000428555 VEGFAP15692 232 aaPredicted RBP12.19□□□□□ -0.46
TRIM39-208ENST00000428555 EXOSC9Q06265 439 aaKnown RBP12.19□□□□□ -0.46
TRIM39-208ENST00000428555 G2E3Q7L622 706 aa12.19□□□□□ -0.46
TRIM39-208ENST00000428555 JARID2Q92833 1246 aaPredicted RBP12.19□□□□□ -0.46
TRIM39-208ENST00000428555 STK31Q9BXU1 1019 aa12.19□□□□□ -0.46
TRIM39-208ENST00000428555 COL11A2P13942 1736 aaPredicted RBP12.19□□□□□ -0.46
TRIM39-208ENST00000428555 RIC1Q4ADV7 1423 aa12.19□□□□□ -0.46
TRIM39-208ENST00000428555 ABCC4O15439 1325 aa12.18□□□□□ -0.46
TRIM39-208ENST00000428555 FANCIQ9NVI1 1328 aa12.18□□□□□ -0.46
TRIM39-208ENST00000428555 PI4KAP2A4QPH2 592 aa12.18□□□□□ -0.46
TRIM39-208ENST00000428555 IRS4O14654 1257 aaPredicted RBP12.18□□□□□ -0.46
TRIM39-208ENST00000428555 VAMP4O75379 141 aa12.18□□□□□ -0.46
TRIM39-208ENST00000428555 DDX58O95786 925 aaKnown RBP12.18□□□□□ -0.46
TRIM39-208ENST00000428555 KSR2Q6VAB6 950 aa12.18□□□□□ -0.46
TRIM39-208ENST00000428555 DDX46Q7L014 1031 aaKnown RBP12.18□□□□□ -0.46
TRIM39-208ENST00000428555 PI4KAP1Q8N8J0 262 aa12.18□□□□□ -0.46
TRIM39-208ENST00000428555 RBM46Q8TBY0 533 aaKnown RBP12.18□□□□□ -0.46
TRIM39-208ENST00000428555 PSMD1Q99460 953 aa12.18□□□□□ -0.46
TRIM39-208ENST00000428555 METTL22Q9BUU2 404 aaPredicted RBP12.18□□□□□ -0.46
TRIM39-208ENST00000428555 MAP3K2Q9Y2U5 619 aa12.18□□□□□ -0.46
TRIM39-208ENST00000428555 ATP6V0A2Q9Y487 856 aa12.18□□□□□ -0.46
TRIM39-208ENST00000428555 DLEC1Q9Y238 1755 aa12.18□□□□□ -0.46
TRIM39-208ENST00000428555 HSPA6P17066 643 aa12.17□□□□□ -0.46
TRIM39-208ENST00000428555 IARSP41252 1262 aaKnown RBP12.17□□□□□ -0.46
TRIM39-208ENST00000428555 SP8Q8IXZ3 490 aa12.17□□□□□ -0.46
TRIM39-208ENST00000428555 TMX4Q9H1E5 349 aaPredicted RBP12.17□□□□□ -0.46
TRIM39-208ENST00000428555 GRAPQ13588 217 aa12.16□□□□□ -0.46
TRIM39-208ENST00000428555 SF3B3Q15393 1217 aaKnown RBP12.16□□□□□ -0.46
TRIM39-208ENST00000428555 GRIPAP1Q4V328 841 aa12.16□□□□□ -0.46
TRIM39-208ENST00000428555 ZBTB38Q8NAP3 1195 aaPredicted RBP12.16□□□□□ -0.46
TRIM39-208ENST00000428555 CCDC191Q8NCU4 936 aa12.16□□□□□ -0.46
TRIM39-208ENST00000428555 GRAPLQ8TC17 118 aaPredicted RBP12.16□□□□□ -0.46
TRIM39-208ENST00000428555 CWC25Q9NXE8 425 aaPredicted RBP12.16□□□□□ -0.46
TRIM39-208ENST00000428555 SBF1O95248 1867 aa12.15□□□□□ -0.46
TRIM39-208ENST00000428555 PCCAP05165 728 aaPredicted RBP12.15□□□□□ -0.46
TRIM39-208ENST00000428555 IGKV5-2P06315 115 aa12.15□□□□□ -0.46
TRIM39-208ENST00000428555 JDP2Q8WYK2 163 aa12.15□□□□□ -0.46
TRIM39-208ENST00000428555 MYH16Q9H6N6 1097 aa12.15□□□□□ -0.46
TRIM39-208ENST00000428555 TNRC6CQ9HCJ0 1690 aaKnown RBP12.15□□□□□ -0.46
TRIM39-208ENST00000428555 FZD9O00144 591 aa12.14□□□□□ -0.47
TRIM39-208ENST00000428555 FSTL1Q12841 308 aa12.14□□□□□ -0.47
TRIM39-208ENST00000428555 FLIIQ13045 1269 aa12.14□□□□□ -0.47
TRIM39-208ENST00000428555 LARGE2Q8N3Y3 721 aa12.14□□□□□ -0.47
TRIM39-208ENST00000428555 MPNDQ8N594 471 aa12.14□□□□□ -0.47
TRIM39-208ENST00000428555 CELF1Q92879 486 aaKnown RBP12.14□□□□□ -0.47
TRIM39-208ENST00000428555 ZNF541Q9H0D2 1346 aa12.13□□□□□ -0.47
TRIM39-208ENST00000428555 SNED1Q8TER0 1413 aa12.13□□□□□ -0.47
TRIM39-208ENST00000428555 RPS8P62241 208 aaKnown RBP12.13□□□□□ -0.47
TRIM39-208ENST00000428555 NEXNQ0ZGT2 675 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms