RNA–Protein interactions for RNA: ENST00000427506.5

GPC1-205, Transcript of glypican 1, humanhuman

TSL 3

Gene GPC1, Length 573 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-205ENST00000427506 TNRC6CQ9HCJ0 1690 aaKnown RBP23.86■■□□□ 1.41
GPC1-205ENST00000427506 ARFGEF2Q9Y6D5 1785 aa23.86■■□□□ 1.41
GPC1-205ENST00000427506 TOMM70O94826 608 aa23.86■■□□□ 1.41
GPC1-205ENST00000427506 TCIRG1Q13488 830 aa23.86■■□□□ 1.41
GPC1-205ENST00000427506 ANKRD13DQ6ZTN6 518 aa23.86■■□□□ 1.41
GPC1-205ENST00000427506 NLRP10Q86W26 655 aa23.85■■□□□ 1.41
GPC1-205ENST00000427506 PLBD2Q8NHP8 589 aa23.85■■□□□ 1.41
GPC1-205ENST00000427506 NLRP3Q96P20 1036 aa23.85■■□□□ 1.41
GPC1-205ENST00000427506 RIC1Q4ADV7 1423 aa23.84■■□□□ 1.41
GPC1-205ENST00000427506 FER1L6Q2WGJ9 1857 aa23.84■■□□□ 1.41
GPC1-205ENST00000427506 GLTPD2A6NH11 291 aa23.84■■□□□ 1.41
GPC1-205ENST00000427506 CCDC27Q2M243 656 aa23.84■■□□□ 1.41
GPC1-205ENST00000427506 DPY19L2Q6NUT2 758 aa23.84■■□□□ 1.41
GPC1-205ENST00000427506 RBM17Q96I25 401 aaKnown RBP23.84■■□□□ 1.41
GPC1-205ENST00000427506 OLFM4Q6UX06 510 aa23.83■■□□□ 1.41
GPC1-205ENST00000427506 WWC1Q8IX03 1113 aa23.83■■□□□ 1.41
GPC1-205ENST00000427506 RTKN2Q8IZC4 609 aa23.83■■□□□ 1.41
GPC1-205ENST00000427506 C8orf58Q8NAV2 365 aa23.83■■□□□ 1.41
GPC1-205ENST00000427506 TRMT112Q9UI30 125 aaKnown RBP23.83■■□□□ 1.41
GPC1-205ENST00000427506 RNF123Q5XPI4 1314 aa23.83■■□□□ 1.4
GPC1-205ENST00000427506 CCDC88AQ3V6T2 1871 aa23.82■■□□□ 1.4
GPC1-205ENST00000427506 HOXA10P31260 410 aaPredicted RBP23.82■■□□□ 1.4
GPC1-205ENST00000427506 FKBP4Q02790 459 aaKnown RBP eCLIP23.82■■□□□ 1.4
GPC1-205ENST00000427506 CHMP4AQ9BY43 222 aa23.82■■□□□ 1.4
GPC1-205ENST00000427506 TIAM2Q8IVF5 1701 aa23.81■■□□□ 1.4
GPC1-205ENST00000427506 SLC10A5Q5PT55 438 aa23.81■■□□□ 1.4
GPC1-205ENST00000427506 TSR2Q969E8 191 aaKnown RBP23.81■■□□□ 1.4
GPC1-205ENST00000427506 ZNF428Q96B54 188 aa23.81■■□□□ 1.4
GPC1-205ENST00000427506 SALL2Q9Y467 1007 aaPredicted RBP23.81■■□□□ 1.4
GPC1-205ENST00000427506 HSPA6P17066 643 aa23.8■■□□□ 1.4
GPC1-205ENST00000427506 GOLGA2Q08379 1002 aa23.8■■□□□ 1.4
GPC1-205ENST00000427506 C3orf67Q6ZVT6 689 aa23.8■■□□□ 1.4
GPC1-205ENST00000427506 RIC3Q7Z5B4 369 aa23.8■■□□□ 1.4
GPC1-205ENST00000427506 CRAMP1Q96RY5 1269 aa23.8■■□□□ 1.4
GPC1-205ENST00000427506 ANKRD36CQ5JPF3 1778 aa23.8■■□□□ 1.4
GPC1-205ENST00000427506 TCERG1O14776 1098 aaKnown RBP23.79■■□□□ 1.4
GPC1-205ENST00000427506 HCLS1P14317 486 aaPredicted RBP23.79■■□□□ 1.4
GPC1-205ENST00000427506 CCDC30Q5VVM6 783 aa23.79■■□□□ 1.4
GPC1-205ENST00000427506 FAM9BQ8IZU0 186 aa23.79■■□□□ 1.4
GPC1-205ENST00000427506 PHAXQ9H814 394 aaKnown RBP23.79■■□□□ 1.4
GPC1-205ENST00000427506 ZNF277Q9NRM2 450 aaPredicted RBP23.79■■□□□ 1.4
GPC1-205ENST00000427506 SH3TC1Q8TE82 1336 aa23.79■■□□□ 1.4
GPC1-205ENST00000427506 ATP5J2-PTCD1G3V325 749 aa23.78■■□□□ 1.4
GPC1-205ENST00000427506 CC2D2BQ6DHV5 1058 aa23.78■■□□□ 1.4
GPC1-205ENST00000427506 RBM46Q8TBY0 533 aaKnown RBP23.78■■□□□ 1.4
GPC1-205ENST00000427506 TMX4Q9H1E5 349 aaPredicted RBP23.78■■□□□ 1.4
GPC1-205ENST00000427506 PPEF1O14829 653 aaPredicted RBP23.77■■□□□ 1.4
GPC1-205ENST00000427506 VEGFAP15692 232 aaPredicted RBP23.77■■□□□ 1.4
GPC1-205ENST00000427506 NCBP3Q53F19 620 aaKnown RBP23.77■■□□□ 1.4
GPC1-205ENST00000427506 SYNE4Q8N205 404 aa23.77■■□□□ 1.4
GPC1-205ENST00000427506 TSPYL6Q8N831 410 aa23.77■■□□□ 1.4
GPC1-205ENST00000427506 ISCA1Q9BUE6 129 aa23.76■■□□□ 1.39
GPC1-205ENST00000427506 IL16Q14005 1332 aa23.76■■□□□ 1.39
GPC1-205ENST00000427506 DDX58O95786 925 aaKnown RBP23.74■■□□□ 1.39
GPC1-205ENST00000427506 IARSP41252 1262 aaKnown RBP23.74■■□□□ 1.39
GPC1-205ENST00000427506 PSMD1Q99460 953 aa23.74■■□□□ 1.39
GPC1-205ENST00000427506 STK31Q9BXU1 1019 aa23.74■■□□□ 1.39
GPC1-205ENST00000427506 DICER1Q9UPY3 1922 aaKnown RBP23.74■■□□□ 1.39
GPC1-205ENST00000427506 DDNO94850 711 aaPredicted RBP23.73■■□□□ 1.39
GPC1-205ENST00000427506 TWISTNBQ3B726 338 aaPredicted RBP23.73■■□□□ 1.39
GPC1-205ENST00000427506 GRIPAP1Q4V328 841 aa23.73■■□□□ 1.39
GPC1-205ENST00000427506 DDX46Q7L014 1031 aaKnown RBP23.73■■□□□ 1.39
GPC1-205ENST00000427506 FAM89AQ96GI7 184 aa23.73■■□□□ 1.39
GPC1-205ENST00000427506 ABCC4O15439 1325 aa23.73■■□□□ 1.39
GPC1-205ENST00000427506 FSTL1Q12841 308 aa23.72■■□□□ 1.39
GPC1-205ENST00000427506 RTL5Q5HYW3 569 aaPredicted RBP23.72■■□□□ 1.39
GPC1-205ENST00000427506 MYD88Q99836 296 aa23.72■■□□□ 1.39
GPC1-205ENST00000427506 TRIM28Q13263 835 aaKnown RBP23.71■■□□□ 1.39
GPC1-205ENST00000427506 WDR63Q8IWG1 891 aa23.71■■□□□ 1.39
GPC1-205ENST00000427506 JDP2Q8WYK2 163 aa23.71■■□□□ 1.39
GPC1-205ENST00000427506 BBOX1O75936 387 aa23.7■■□□□ 1.38
GPC1-205ENST00000427506 SMC1BQ8NDV3 1235 aa23.7■■□□□ 1.38
GPC1-205ENST00000427506 ATP6V0A2Q9Y487 856 aa23.7■■□□□ 1.38
GPC1-205ENST00000427506 POTECB2RU33 542 aa23.69■■□□□ 1.38
GPC1-205ENST00000427506 APLP1P51693 650 aa23.69■■□□□ 1.38
GPC1-205ENST00000427506 SLC51AQ86UW1 340 aa23.69■■□□□ 1.38
GPC1-205ENST00000427506 SNED1Q8TER0 1413 aa23.68■■□□□ 1.38
GPC1-205ENST00000427506 WDR90Q96KV7 1748 aa23.68■■□□□ 1.38
GPC1-205ENST00000427506 FANCIQ9NVI1 1328 aa23.68■■□□□ 1.38
GPC1-205ENST00000427506 IRS4O14654 1257 aaPredicted RBP23.67■■□□□ 1.38
GPC1-205ENST00000427506 GRAPQ13588 217 aa23.67■■□□□ 1.38
GPC1-205ENST00000427506 LARGE2Q8N3Y3 721 aa23.67■■□□□ 1.38
GPC1-205ENST00000427506 GRAPLQ8TC17 118 aaPredicted RBP23.67■■□□□ 1.38
GPC1-205ENST00000427506 METTL22Q9BUU2 404 aaPredicted RBP23.67■■□□□ 1.38
GPC1-205ENST00000427506 MAP3K2Q9Y2U5 619 aa23.67■■□□□ 1.38
GPC1-205ENST00000427506 ZNF541Q9H0D2 1346 aa23.66■■□□□ 1.38
GPC1-205ENST00000427506 LAMB2P55268 1798 aa23.66■■□□□ 1.38
GPC1-205ENST00000427506 SLC4A2P04920 1241 aa23.66■■□□□ 1.38
GPC1-205ENST00000427506 SP8Q8IXZ3 490 aa23.66■■□□□ 1.38
GPC1-205ENST00000427506 ZBTB38Q8NAP3 1195 aaPredicted RBP23.66■■□□□ 1.38
GPC1-205ENST00000427506 CCDC191Q8NCU4 936 aa23.66■■□□□ 1.38
GPC1-205ENST00000427506 IQCA1LA6NCM1 817 aa23.65■■□□□ 1.38
GPC1-205ENST00000427506 FZD9O00144 591 aa23.65■■□□□ 1.38
GPC1-205ENST00000427506 HSP90B1P14625 803 aaKnown RBP23.65■■□□□ 1.38
GPC1-205ENST00000427506 KSR2Q6VAB6 950 aa23.65■■□□□ 1.38
GPC1-205ENST00000427506 CWC25Q9NXE8 425 aaPredicted RBP23.65■■□□□ 1.38
GPC1-205ENST00000427506 PI4KAP2A4QPH2 592 aa23.64■■□□□ 1.37
GPC1-205ENST00000427506 EIF6P56537 245 aaKnown RBP23.64■■□□□ 1.37
GPC1-205ENST00000427506 SF3B3Q15393 1217 aaKnown RBP23.64■■□□□ 1.37
GPC1-205ENST00000427506 DPP8Q6V1X1 898 aaPredicted RBP23.64■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms