RNA–Protein interactions for RNA: ENST00000426962.1

LINC01238-202, Transcript of long intergenic non-protein coding RNA 1238, humanhuman

TSL 2

Gene LINC01238, Length 430 nt, Biotype lincRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01238-202ENST00000426962 NLRP3Q96P20 1036 aa13.93□□□□□ -0.18
LINC01238-202ENST00000426962 TAOK3Q9H2K8 898 aa13.93□□□□□ -0.18
LINC01238-202ENST00000426962 RNF123Q5XPI4 1314 aa13.92□□□□□ -0.18
LINC01238-202ENST00000426962 HOXA10P31260 410 aaPredicted RBP13.92□□□□□ -0.18
LINC01238-202ENST00000426962 CCDC93Q567U6 631 aa13.92□□□□□ -0.18
LINC01238-202ENST00000426962 NMRK2Q9NPI5 230 aa13.92□□□□□ -0.18
LINC01238-202ENST00000426962 ABCC12Q96J65 1359 aa13.92□□□□□ -0.18
LINC01238-202ENST00000426962 IL16Q14005 1332 aa13.91□□□□□ -0.18
LINC01238-202ENST00000426962 SBF1O95248 1867 aa13.91□□□□□ -0.18
LINC01238-202ENST00000426962 COL11A2P13942 1736 aaPredicted RBP13.91□□□□□ -0.18
LINC01238-202ENST00000426962 GLTPD2A6NH11 291 aa13.91□□□□□ -0.18
LINC01238-202ENST00000426962 TOMM70O94826 608 aa13.91□□□□□ -0.18
LINC01238-202ENST00000426962 CCDC30Q5VVM6 783 aa13.91□□□□□ -0.18
LINC01238-202ENST00000426962 DPY19L2Q6NUT2 758 aa13.91□□□□□ -0.18
LINC01238-202ENST00000426962 RTKN2Q8IZC4 609 aa13.91□□□□□ -0.18
LINC01238-202ENST00000426962 FAM9BQ8IZU0 186 aa13.91□□□□□ -0.18
LINC01238-202ENST00000426962 RBM17Q96I25 401 aaKnown RBP13.91□□□□□ -0.18
LINC01238-202ENST00000426962 CRAMP1Q96RY5 1269 aa13.91□□□□□ -0.18
LINC01238-202ENST00000426962 RRAGCQ9HB90 399 aa13.91□□□□□ -0.18
LINC01238-202ENST00000426962 TRMT112Q9UI30 125 aaKnown RBP13.91□□□□□ -0.18
LINC01238-202ENST00000426962 SLX4Q8IY92 1834 aa13.91□□□□□ -0.18
LINC01238-202ENST00000426962 RIC1Q4ADV7 1423 aa13.9□□□□□ -0.18
LINC01238-202ENST00000426962 CC2D2BQ6DHV5 1058 aa13.9□□□□□ -0.18
LINC01238-202ENST00000426962 RIC3Q7Z5B4 369 aa13.9□□□□□ -0.18
LINC01238-202ENST00000426962 WDR63Q8IWG1 891 aa13.9□□□□□ -0.18
LINC01238-202ENST00000426962 TSPYL6Q8N831 410 aa13.9□□□□□ -0.18
LINC01238-202ENST00000426962 TSR2Q969E8 191 aaKnown RBP13.9□□□□□ -0.18
LINC01238-202ENST00000426962 SALL2Q9Y467 1007 aaPredicted RBP13.9□□□□□ -0.18
LINC01238-202ENST00000426962 FKBP4Q02790 459 aaKnown RBP eCLIP13.89□□□□□ -0.19
LINC01238-202ENST00000426962 TRIM28Q13263 835 aaKnown RBP13.89□□□□□ -0.19
LINC01238-202ENST00000426962 C3orf67Q6ZVT6 689 aa13.89□□□□□ -0.19
LINC01238-202ENST00000426962 C16orf71Q8IYS4 520 aaPredicted RBP13.89□□□□□ -0.19
LINC01238-202ENST00000426962 ISCA1Q9BUE6 129 aa13.89□□□□□ -0.19
LINC01238-202ENST00000426962 PHAXQ9H814 394 aaKnown RBP13.89□□□□□ -0.19
LINC01238-202ENST00000426962 SH3TC1Q8TE82 1336 aa13.89□□□□□ -0.19
LINC01238-202ENST00000426962 HCLS1P14317 486 aaPredicted RBP13.88□□□□□ -0.19
LINC01238-202ENST00000426962 GOLGA2Q08379 1002 aa13.88□□□□□ -0.19
LINC01238-202ENST00000426962 GRIPAP1Q4V328 841 aa13.88□□□□□ -0.19
LINC01238-202ENST00000426962 OLFM4Q6UX06 510 aa13.88□□□□□ -0.19
LINC01238-202ENST00000426962 SYNE4Q8N205 404 aa13.88□□□□□ -0.19
LINC01238-202ENST00000426962 ATP5J2-PTCD1G3V325 749 aa13.87□□□□□ -0.19
LINC01238-202ENST00000426962 DDX58O95786 925 aaKnown RBP13.87□□□□□ -0.19
LINC01238-202ENST00000426962 TWISTNBQ3B726 338 aaPredicted RBP13.87□□□□□ -0.19
LINC01238-202ENST00000426962 FER1L6Q2WGJ9 1857 aa13.87□□□□□ -0.19
LINC01238-202ENST00000426962 BBOX1O75936 387 aa13.86□□□□□ -0.19
LINC01238-202ENST00000426962 VEGFAP15692 232 aaPredicted RBP13.86□□□□□ -0.19
LINC01238-202ENST00000426962 RBM46Q8TBY0 533 aaKnown RBP13.86□□□□□ -0.19
LINC01238-202ENST00000426962 FAM89AQ96GI7 184 aa13.86□□□□□ -0.19
LINC01238-202ENST00000426962 PSMD1Q99460 953 aa13.86□□□□□ -0.19
LINC01238-202ENST00000426962 STK31Q9BXU1 1019 aa13.86□□□□□ -0.19
LINC01238-202ENST00000426962 TMX4Q9H1E5 349 aaPredicted RBP13.86□□□□□ -0.19
LINC01238-202ENST00000426962 ZNF277Q9NRM2 450 aaPredicted RBP13.86□□□□□ -0.19
LINC01238-202ENST00000426962 PPEF1O14829 653 aaPredicted RBP13.85□□□□□ -0.19
LINC01238-202ENST00000426962 HSPA6P17066 643 aa13.85□□□□□ -0.19
LINC01238-202ENST00000426962 DDX46Q7L014 1031 aaKnown RBP13.85□□□□□ -0.19
LINC01238-202ENST00000426962 ZNF428Q96B54 188 aa13.85□□□□□ -0.19
LINC01238-202ENST00000426962 ARFGEF2Q9Y6D5 1785 aa13.85□□□□□ -0.19
LINC01238-202ENST00000426962 TCERG1O14776 1098 aaKnown RBP13.84□□□□□ -0.19
LINC01238-202ENST00000426962 SLC4A2P04920 1241 aa13.84□□□□□ -0.19
LINC01238-202ENST00000426962 IARSP41252 1262 aaKnown RBP13.84□□□□□ -0.19
LINC01238-202ENST00000426962 CCDC191Q8NCU4 936 aa13.84□□□□□ -0.19
LINC01238-202ENST00000426962 MYD88Q99836 296 aa13.84□□□□□ -0.19
LINC01238-202ENST00000426962 METTL22Q9BUU2 404 aaPredicted RBP13.84□□□□□ -0.19
LINC01238-202ENST00000426962 ATP6V0A2Q9Y487 856 aa13.84□□□□□ -0.19
LINC01238-202ENST00000426962 TNRC6CQ9HCJ0 1690 aaKnown RBP13.84□□□□□ -0.19
LINC01238-202ENST00000426962 CCDC88AQ3V6T2 1871 aa13.84□□□□□ -0.19
LINC01238-202ENST00000426962 CACNA1SQ13698 1873 aa13.83□□□□□ -0.2
LINC01238-202ENST00000426962 POTECB2RU33 542 aa13.83□□□□□ -0.2
LINC01238-202ENST00000426962 IRS4O14654 1257 aaPredicted RBP13.83□□□□□ -0.2
LINC01238-202ENST00000426962 VAMP4O75379 141 aa13.83□□□□□ -0.2
LINC01238-202ENST00000426962 DDNO94850 711 aaPredicted RBP13.83□□□□□ -0.2
LINC01238-202ENST00000426962 HSP90B1P14625 803 aaKnown RBP13.83□□□□□ -0.2
LINC01238-202ENST00000426962 FSTL1Q12841 308 aa13.83□□□□□ -0.2
LINC01238-202ENST00000426962 SF3B3Q15393 1217 aaKnown RBP13.83□□□□□ -0.2
LINC01238-202ENST00000426962 KSR2Q6VAB6 950 aa13.83□□□□□ -0.2
LINC01238-202ENST00000426962 SP8Q8IXZ3 490 aa13.83□□□□□ -0.2
LINC01238-202ENST00000426962 ZBTB38Q8NAP3 1195 aaPredicted RBP13.83□□□□□ -0.2
LINC01238-202ENST00000426962 MAP3K2Q9Y2U5 619 aa13.83□□□□□ -0.2
LINC01238-202ENST00000426962 ABCC4O15439 1325 aa13.83□□□□□ -0.2
LINC01238-202ENST00000426962 FANCIQ9NVI1 1328 aa13.83□□□□□ -0.2
LINC01238-202ENST00000426962 PI4KAP2A4QPH2 592 aa13.82□□□□□ -0.2
LINC01238-202ENST00000426962 GRAPQ13588 217 aa13.82□□□□□ -0.2
LINC01238-202ENST00000426962 RTL5Q5HYW3 569 aaPredicted RBP13.82□□□□□ -0.2
LINC01238-202ENST00000426962 PI4KAP1Q8N8J0 262 aa13.82□□□□□ -0.2
LINC01238-202ENST00000426962 GRAPLQ8TC17 118 aaPredicted RBP13.82□□□□□ -0.2
LINC01238-202ENST00000426962 JDP2Q8WYK2 163 aa13.82□□□□□ -0.2
LINC01238-202ENST00000426962 VPS33BQ9H267 617 aa13.82□□□□□ -0.2
LINC01238-202ENST00000426962 MYH16Q9H6N6 1097 aa13.82□□□□□ -0.2
LINC01238-202ENST00000426962 SNED1Q8TER0 1413 aa13.81□□□□□ -0.2
LINC01238-202ENST00000426962 ANKRD36CQ5JPF3 1778 aa13.81□□□□□ -0.2
LINC01238-202ENST00000426962 FZD9O00144 591 aa13.81□□□□□ -0.2
LINC01238-202ENST00000426962 EXOSC9Q06265 439 aaKnown RBP13.81□□□□□ -0.2
LINC01238-202ENST00000426962 TMC4Q7Z404 712 aa13.81□□□□□ -0.2
LINC01238-202ENST00000426962 SPINK5Q9NQ38 1064 aaPredicted RBP13.81□□□□□ -0.2
LINC01238-202ENST00000426962 CWC25Q9NXE8 425 aaPredicted RBP13.81□□□□□ -0.2
LINC01238-202ENST00000426962 DICER1Q9UPY3 1922 aaKnown RBP13.8□□□□□ -0.2
LINC01238-202ENST00000426962 PCCAP05165 728 aaPredicted RBP13.8□□□□□ -0.2
LINC01238-202ENST00000426962 NEXNQ0ZGT2 675 aa13.8□□□□□ -0.2
LINC01238-202ENST00000426962 G2E3Q7L622 706 aa13.8□□□□□ -0.2
LINC01238-202ENST00000426962 SMC1BQ8NDV3 1235 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms