RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 PI4KAP2A4QPH2 592 aa13.08□□□□□ -0.31
LIMS1-207ENST00000422797 DDX58O95786 925 aaKnown RBP13.08□□□□□ -0.31
LIMS1-207ENST00000422797 KCNJ4P48050 445 aa13.08□□□□□ -0.31
LIMS1-207ENST00000422797 DNM1Q05193 864 aaKnown RBP13.08□□□□□ -0.31
LIMS1-207ENST00000422797 TEFQ10587 303 aa13.08□□□□□ -0.31
LIMS1-207ENST00000422797 LARP1BQ659C4 914 aaKnown RBP13.08□□□□□ -0.31
LIMS1-207ENST00000422797 PRPF40BQ6NWY9 871 aaKnown RBP13.08□□□□□ -0.31
LIMS1-207ENST00000422797 RBM43Q6ZSC3 357 aaKnown RBP13.08□□□□□ -0.31
LIMS1-207ENST00000422797 PI4KAP1Q8N8J0 262 aa13.08□□□□□ -0.31
LIMS1-207ENST00000422797 MAP4K1Q92918 833 aa13.08□□□□□ -0.31
LIMS1-207ENST00000422797 CHMP4CQ96CF2 233 aa13.08□□□□□ -0.31
LIMS1-207ENST00000422797 SPG7Q9UQ90 795 aa13.08□□□□□ -0.31
LIMS1-207ENST00000422797 NFAT5O94916 1531 aa13.08□□□□□ -0.32
LIMS1-207ENST00000422797 VPS37CA5D8V6 355 aaPredicted RBP13.08□□□□□ -0.32
LIMS1-207ENST00000422797 GOLGA6L4A6NEF3 574 aa13.08□□□□□ -0.32
LIMS1-207ENST00000422797 NBPF7P0C2Y1 421 aaPredicted RBP13.08□□□□□ -0.32
LIMS1-207ENST00000422797 FOXD4L6Q3SYB3 417 aaPredicted RBP13.08□□□□□ -0.32
LIMS1-207ENST00000422797 PLEKHO1Q53GL0 409 aaPredicted RBP13.08□□□□□ -0.32
LIMS1-207ENST00000422797 CREB3L3Q68CJ9 461 aa13.08□□□□□ -0.32
LIMS1-207ENST00000422797 KSR2Q6VAB6 950 aa13.08□□□□□ -0.32
LIMS1-207ENST00000422797 FOXD4L3Q6VB84 417 aaPredicted RBP13.08□□□□□ -0.32
LIMS1-207ENST00000422797 KCNH5Q8NCM2 988 aa13.08□□□□□ -0.32
LIMS1-207ENST00000422797 TTC12Q9H892 705 aaPredicted RBP13.08□□□□□ -0.32
LIMS1-207ENST00000422797 C9orf78Q9NZ63 289 aaPredicted RBP13.08□□□□□ -0.32
LIMS1-207ENST00000422797 CHPF2Q9P2E5 772 aa13.08□□□□□ -0.32
LIMS1-207ENST00000422797 RBM8AQ9Y5S9 174 aaKnown RBP13.08□□□□□ -0.32
LIMS1-207ENST00000422797 NUTM2FA1L443 756 aa13.07□□□□□ -0.32
LIMS1-207ENST00000422797 NEMFO60524 1076 aa13.07□□□□□ -0.32
LIMS1-207ENST00000422797 MAP4K4O95819 1239 aaPredicted RBP13.07□□□□□ -0.32
LIMS1-207ENST00000422797 CDC25BP30305 580 aa13.07□□□□□ -0.32
LIMS1-207ENST00000422797 GIMAP6Q6P9H5 292 aa13.07□□□□□ -0.32
LIMS1-207ENST00000422797 BLOC1S2Q6QNY1 142 aa13.07□□□□□ -0.32
LIMS1-207ENST00000422797 U3KPZ7 1027 aaPredicted RBP13.07□□□□□ -0.32
LIMS1-207ENST00000422797 ADAMTSL3P82987 1691 aa13.07□□□□□ -0.32
LIMS1-207ENST00000422797 TYRO3Q06418 890 aa13.06□□□□□ -0.32
LIMS1-207ENST00000422797 G3BP1Q13283 466 aaKnown RBP eCLIP13.06□□□□□ -0.32
LIMS1-207ENST00000422797 LINS1Q8NG48 757 aa13.06□□□□□ -0.32
LIMS1-207ENST00000422797 TNMDQ9H2S6 317 aa13.06□□□□□ -0.32
LIMS1-207ENST00000422797 CLSTN2Q9H4D0 955 aa13.06□□□□□ -0.32
LIMS1-207ENST00000422797 HEG1Q9ULI3 1381 aa13.06□□□□□ -0.32
LIMS1-207ENST00000422797 MED23Q9ULK4 1368 aa13.06□□□□□ -0.32
LIMS1-207ENST00000422797 BTBD11A6QL63 1104 aa13.05□□□□□ -0.32
LIMS1-207ENST00000422797 SLC27A2O14975 620 aa13.05□□□□□ -0.32
LIMS1-207ENST00000422797 CTAGE5O15320 804 aa13.05□□□□□ -0.32
LIMS1-207ENST00000422797 LARGE1O95461 756 aa13.05□□□□□ -0.32
LIMS1-207ENST00000422797 EIF2S2P20042 333 aaKnown RBP13.05□□□□□ -0.32
LIMS1-207ENST00000422797 RPS6KB1P23443 525 aa13.05□□□□□ -0.32
LIMS1-207ENST00000422797 PTH1RQ03431 593 aa13.05□□□□□ -0.32
LIMS1-207ENST00000422797 DHX8Q14562 1220 aaKnown RBP13.05□□□□□ -0.32
LIMS1-207ENST00000422797 ME3Q16798 604 aa13.05□□□□□ -0.32
LIMS1-207ENST00000422797 ATL3Q6DD88 541 aa13.05□□□□□ -0.32
LIMS1-207ENST00000422797 AACSQ86V21 672 aa13.05□□□□□ -0.32
LIMS1-207ENST00000422797 THEMISQ8N1K5 641 aaPredicted RBP13.05□□□□□ -0.32
LIMS1-207ENST00000422797 ABTB2Q8N961 1025 aa13.05□□□□□ -0.32
LIMS1-207ENST00000422797 TDRD7Q8NHU6 1098 aaKnown RBP13.05□□□□□ -0.32
LIMS1-207ENST00000422797 ZSCAN16Q9H4T2 348 aaPredicted RBP13.05□□□□□ -0.32
LIMS1-207ENST00000422797 LTN1O94822 1766 aa13.05□□□□□ -0.32
LIMS1-207ENST00000422797 PLEKHG2Q9H7P9 1386 aa13.05□□□□□ -0.32
LIMS1-207ENST00000422797 RGPD8O14715 1765 aaPredicted RBP13.04□□□□□ -0.32
LIMS1-207ENST00000422797 CTIFO43310 598 aaKnown RBP13.04□□□□□ -0.32
LIMS1-207ENST00000422797 PDCL2Q8N4E4 241 aa13.04□□□□□ -0.32
LIMS1-207ENST00000422797 SPATA32Q96LK8 384 aa13.04□□□□□ -0.32
LIMS1-207ENST00000422797 SLC26A8Q96RN1 970 aa13.04□□□□□ -0.32
LIMS1-207ENST00000422797 GTPBP4Q9BZE4 634 aaKnown RBP13.04□□□□□ -0.32
LIMS1-207ENST00000422797 TCHHQ07283 1943 aa13.04□□□□□ -0.32
LIMS1-207ENST00000422797 ADCK5Q3MIX3 580 aa13.03□□□□□ -0.32
LIMS1-207ENST00000422797 TTC6Q86TZ1 520 aa13.03□□□□□ -0.32
LIMS1-207ENST00000422797 FEZ1Q99689 392 aa13.03□□□□□ -0.32
LIMS1-207ENST00000422797 CFAP45Q9UL16 551 aa13.03□□□□□ -0.32
LIMS1-207ENST00000422797 TPCN1Q9ULQ1 816 aa13.03□□□□□ -0.32
LIMS1-207ENST00000422797 PAXBP1Q9Y5B6 917 aa13.03□□□□□ -0.32
LIMS1-207ENST00000422797 MRVI1Q9Y6F6 885 aa13.03□□□□□ -0.32
LIMS1-207ENST00000422797 CAMTA1Q9Y6Y1 1673 aa13.03□□□□□ -0.32
LIMS1-207ENST00000422797 SMTNL1A8MU46 457 aa13.03□□□□□ -0.32
LIMS1-207ENST00000422797 GRM8O00222 908 aa13.03□□□□□ -0.32
LIMS1-207ENST00000422797 SOCS7O14512 581 aa13.03□□□□□ -0.32
LIMS1-207ENST00000422797 NMIQ13287 307 aaPredicted RBP13.03□□□□□ -0.32
LIMS1-207ENST00000422797 C1orf141Q5JVX7 400 aa13.03□□□□□ -0.32
LIMS1-207ENST00000422797 USPL1Q5W0Q7 1092 aa13.03□□□□□ -0.32
LIMS1-207ENST00000422797 ZNF530Q6P9A1 599 aaPredicted RBP13.03□□□□□ -0.32
LIMS1-207ENST00000422797 ANKRD7Q92527 254 aa13.03□□□□□ -0.32
LIMS1-207ENST00000422797 LLPHQ9BRT6 129 aaKnown RBP13.03□□□□□ -0.32
LIMS1-207ENST00000422797 KCNF1Q9H3M0 494 aa13.03□□□□□ -0.32
LIMS1-207ENST00000422797 MAP3K2Q9Y2U5 619 aa13.03□□□□□ -0.32
LIMS1-207ENST00000422797 COL15A1P39059 1388 aa13.02□□□□□ -0.32
LIMS1-207ENST00000422797 NPHP4O75161 1426 aaPredicted RBP13.02□□□□□ -0.32
LIMS1-207ENST00000422797 HMGB1P09429 215 aaKnown RBP13.02□□□□□ -0.33
LIMS1-207ENST00000422797 PLCB2Q00722 1185 aa13.02□□□□□ -0.33
LIMS1-207ENST00000422797 DMTNQ08495 405 aa13.02□□□□□ -0.33
LIMS1-207ENST00000422797 ST3GAL1Q11201 340 aa13.02□□□□□ -0.33
LIMS1-207ENST00000422797 SARM1Q6SZW1 724 aa13.02□□□□□ -0.33
LIMS1-207ENST00000422797 PLA2G4DQ86XP0 818 aa13.02□□□□□ -0.33
LIMS1-207ENST00000422797 ZNF710Q8N1W2 664 aa13.02□□□□□ -0.33
LIMS1-207ENST00000422797 LEO1Q8WVC0 666 aaPredicted RBP13.02□□□□□ -0.33
LIMS1-207ENST00000422797 ZNF830Q96NB3 372 aaPredicted RBP13.02□□□□□ -0.33
LIMS1-207ENST00000422797 FSD1Q9BTV5 496 aa13.02□□□□□ -0.33
LIMS1-207ENST00000422797 BCL2L12Q9HB09 334 aa13.02□□□□□ -0.33
LIMS1-207ENST00000422797 ADAMTS7Q9UKP4 1686 aa13.01□□□□□ -0.33
LIMS1-207ENST00000422797 RNMTO43148 476 aaKnown RBP13.01□□□□□ -0.33
LIMS1-207ENST00000422797 ZNF75DP51815 510 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms