RNA–Protein interactions for RNA: ENST00000417122.6

ITGB1-204, Transcript of integrin subunit beta 1, humanhuman

TSL 4

Gene ITGB1, Length 569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB1-204ENST00000417122 C8orf58Q8NAV2 365 aa20.23■□□□□ 0.83
ITGB1-204ENST00000417122 PLBD2Q8NHP8 589 aa20.23■□□□□ 0.83
ITGB1-204ENST00000417122 KIF3CO14782 793 aa20.22■□□□□ 0.83
ITGB1-204ENST00000417122 C7orf43Q8WVR3 580 aa20.22■□□□□ 0.83
ITGB1-204ENST00000417122 TSR2Q969E8 191 aaKnown RBP20.22■□□□□ 0.83
ITGB1-204ENST00000417122 ZC3H4Q9UPT8 1303 aaKnown RBP20.22■□□□□ 0.83
ITGB1-204ENST00000417122 TIAM2Q8IVF5 1701 aa20.22■□□□□ 0.83
ITGB1-204ENST00000417122 NLRP10Q86W26 655 aa20.21■□□□□ 0.83
ITGB1-204ENST00000417122 FAM9BQ8IZU0 186 aa20.21■□□□□ 0.83
ITGB1-204ENST00000417122 TAOK3Q9H2K8 898 aa20.21■□□□□ 0.83
ITGB1-204ENST00000417122 LTBP3Q9NS15 1303 aa20.21■□□□□ 0.83
ITGB1-204ENST00000417122 DICER1Q9UPY3 1922 aaKnown RBP20.2■□□□□ 0.82
ITGB1-204ENST00000417122 CCDC93Q567U6 631 aa20.2■□□□□ 0.82
ITGB1-204ENST00000417122 RPGRQ92834 1020 aaKnown RBP20.2■□□□□ 0.82
ITGB1-204ENST00000417122 CHMP4AQ9BY43 222 aa20.2■□□□□ 0.82
ITGB1-204ENST00000417122 NMRK2Q9NPI5 230 aa20.2■□□□□ 0.82
ITGB1-204ENST00000417122 SALL2Q9Y467 1007 aaPredicted RBP20.2■□□□□ 0.82
ITGB1-204ENST00000417122 IL16Q14005 1332 aa20.2■□□□□ 0.82
ITGB1-204ENST00000417122 RNF123Q5XPI4 1314 aa20.2■□□□□ 0.82
ITGB1-204ENST00000417122 KDM2BQ8NHM5 1336 aa20.2■□□□□ 0.82
ITGB1-204ENST00000417122 SLC10A5Q5PT55 438 aa20.19■□□□□ 0.82
ITGB1-204ENST00000417122 TSPYL6Q8N831 410 aa20.19■□□□□ 0.82
ITGB1-204ENST00000417122 NLRP3Q96P20 1036 aa20.19■□□□□ 0.82
ITGB1-204ENST00000417122 HOXA10P31260 410 aaPredicted RBP20.18■□□□□ 0.82
ITGB1-204ENST00000417122 CCDC30Q5VVM6 783 aa20.18■□□□□ 0.82
ITGB1-204ENST00000417122 RBM17Q96I25 401 aaKnown RBP20.18■□□□□ 0.82
ITGB1-204ENST00000417122 PHAXQ9H814 394 aaKnown RBP20.18■□□□□ 0.82
ITGB1-204ENST00000417122 TRMT112Q9UI30 125 aaKnown RBP20.18■□□□□ 0.82
ITGB1-204ENST00000417122 OLFM4Q6UX06 510 aa20.17■□□□□ 0.82
ITGB1-204ENST00000417122 C3orf67Q6ZVT6 689 aa20.17■□□□□ 0.82
ITGB1-204ENST00000417122 GOLGA2Q08379 1002 aa20.16■□□□□ 0.82
ITGB1-204ENST00000417122 RIC3Q7Z5B4 369 aa20.16■□□□□ 0.82
ITGB1-204ENST00000417122 WDR63Q8IWG1 891 aa20.16■□□□□ 0.82
ITGB1-204ENST00000417122 RTKN2Q8IZC4 609 aa20.16■□□□□ 0.82
ITGB1-204ENST00000417122 CRAMP1Q96RY5 1269 aa20.16■□□□□ 0.82
ITGB1-204ENST00000417122 ISCA1Q9BUE6 129 aa20.16■□□□□ 0.82
ITGB1-204ENST00000417122 SH3TC1Q8TE82 1336 aa20.16■□□□□ 0.82
ITGB1-204ENST00000417122 LAMB2P55268 1798 aa20.16■□□□□ 0.82
ITGB1-204ENST00000417122 GLTPD2A6NH11 291 aa20.15■□□□□ 0.82
ITGB1-204ENST00000417122 ATP5J2-PTCD1G3V325 749 aa20.15■□□□□ 0.82
ITGB1-204ENST00000417122 FKBP4Q02790 459 aaKnown RBP eCLIP20.15■□□□□ 0.82
ITGB1-204ENST00000417122 TWISTNBQ3B726 338 aaPredicted RBP20.15■□□□□ 0.82
ITGB1-204ENST00000417122 SYNE4Q8N205 404 aa20.15■□□□□ 0.82
ITGB1-204ENST00000417122 RRAGCQ9HB90 399 aa20.15■□□□□ 0.82
ITGB1-204ENST00000417122 HCLS1P14317 486 aaPredicted RBP20.14■□□□□ 0.81
ITGB1-204ENST00000417122 ZNF428Q96B54 188 aa20.14■□□□□ 0.81
ITGB1-204ENST00000417122 FANCIQ9NVI1 1328 aa20.13■□□□□ 0.81
ITGB1-204ENST00000417122 TOMM70O94826 608 aa20.13■□□□□ 0.81
ITGB1-204ENST00000417122 CC2D2BQ6DHV5 1058 aa20.13■□□□□ 0.81
ITGB1-204ENST00000417122 DPY19L2Q6NUT2 758 aa20.13■□□□□ 0.81
ITGB1-204ENST00000417122 PPEF1O14829 653 aaPredicted RBP20.12■□□□□ 0.81
ITGB1-204ENST00000417122 DDX58O95786 925 aaKnown RBP20.12■□□□□ 0.81
ITGB1-204ENST00000417122 TRIM28Q13263 835 aaKnown RBP20.12■□□□□ 0.81
ITGB1-204ENST00000417122 C16orf71Q8IYS4 520 aaPredicted RBP20.12■□□□□ 0.81
ITGB1-204ENST00000417122 STK31Q9BXU1 1019 aa20.12■□□□□ 0.81
ITGB1-204ENST00000417122 DDX60Q8IY21 1712 aaKnown RBP20.12■□□□□ 0.81
ITGB1-204ENST00000417122 FAM89AQ96GI7 184 aa20.11■□□□□ 0.81
ITGB1-204ENST00000417122 ZNF277Q9NRM2 450 aaPredicted RBP20.11■□□□□ 0.81
ITGB1-204ENST00000417122 SNED1Q8TER0 1413 aa20.1■□□□□ 0.81
ITGB1-204ENST00000417122 ABCC4O15439 1325 aa20.1■□□□□ 0.81
ITGB1-204ENST00000417122 TCERG1O14776 1098 aaKnown RBP20.1■□□□□ 0.81
ITGB1-204ENST00000417122 PSMD1Q99460 953 aa20.1■□□□□ 0.81
ITGB1-204ENST00000417122 MYD88Q99836 296 aa20.1■□□□□ 0.81
ITGB1-204ENST00000417122 GRIPAP1Q4V328 841 aa20.09■□□□□ 0.81
ITGB1-204ENST00000417122 WDR90Q96KV7 1748 aa20.08■□□□□ 0.81
ITGB1-204ENST00000417122 VEGFAP15692 232 aaPredicted RBP20.08■□□□□ 0.81
ITGB1-204ENST00000417122 IARSP41252 1262 aaKnown RBP20.08■□□□□ 0.81
ITGB1-204ENST00000417122 RTL5Q5HYW3 569 aaPredicted RBP20.08■□□□□ 0.81
ITGB1-204ENST00000417122 DDX46Q7L014 1031 aaKnown RBP20.08■□□□□ 0.81
ITGB1-204ENST00000417122 RBM46Q8TBY0 533 aaKnown RBP20.08■□□□□ 0.81
ITGB1-204ENST00000417122 METTL22Q9BUU2 404 aaPredicted RBP20.08■□□□□ 0.81
ITGB1-204ENST00000417122 TMX4Q9H1E5 349 aaPredicted RBP20.08■□□□□ 0.81
ITGB1-204ENST00000417122 SLC4A2P04920 1241 aa20.07■□□□□ 0.8
ITGB1-204ENST00000417122 EXOSC9Q06265 439 aaKnown RBP20.07■□□□□ 0.8
ITGB1-204ENST00000417122 SLC51AQ86UW1 340 aa20.07■□□□□ 0.8
ITGB1-204ENST00000417122 CCDC191Q8NCU4 936 aa20.07■□□□□ 0.8
ITGB1-204ENST00000417122 SPINK5Q9NQ38 1064 aaPredicted RBP20.07■□□□□ 0.8
ITGB1-204ENST00000417122 MAP3K2Q9Y2U5 619 aa20.07■□□□□ 0.8
ITGB1-204ENST00000417122 ATP6V0A2Q9Y487 856 aa20.07■□□□□ 0.8
ITGB1-204ENST00000417122 TAF1P21675 1872 aa20.07■□□□□ 0.8
ITGB1-204ENST00000417122 PI4KAP2A4QPH2 592 aa20.06■□□□□ 0.8
ITGB1-204ENST00000417122 IRS4O14654 1257 aaPredicted RBP20.06■□□□□ 0.8
ITGB1-204ENST00000417122 BBOX1O75936 387 aa20.06■□□□□ 0.8
ITGB1-204ENST00000417122 HSPA6P17066 643 aa20.06■□□□□ 0.8
ITGB1-204ENST00000417122 KSR2Q6VAB6 950 aa20.06■□□□□ 0.8
ITGB1-204ENST00000417122 PI4KAP1Q8N8J0 262 aa20.06■□□□□ 0.8
ITGB1-204ENST00000417122 ZBTB38Q8NAP3 1195 aaPredicted RBP20.06■□□□□ 0.8
ITGB1-204ENST00000417122 CACNA1FO60840 1977 aa20.06■□□□□ 0.8
ITGB1-204ENST00000417122 VAMP4O75379 141 aa20.05■□□□□ 0.8
ITGB1-204ENST00000417122 DDNO94850 711 aaPredicted RBP20.05■□□□□ 0.8
ITGB1-204ENST00000417122 GRAPQ13588 217 aa20.05■□□□□ 0.8
ITGB1-204ENST00000417122 G2E3Q7L622 706 aa20.05■□□□□ 0.8
ITGB1-204ENST00000417122 GRAPLQ8TC17 118 aaPredicted RBP20.05■□□□□ 0.8
ITGB1-204ENST00000417122 MYH16Q9H6N6 1097 aa20.05■□□□□ 0.8
ITGB1-204ENST00000417122 CWC25Q9NXE8 425 aaPredicted RBP20.05■□□□□ 0.8
ITGB1-204ENST00000417122 POTECB2RU33 542 aa20.04■□□□□ 0.8
ITGB1-204ENST00000417122 SF3B3Q15393 1217 aaKnown RBP20.04■□□□□ 0.8
ITGB1-204ENST00000417122 SP8Q8IXZ3 490 aa20.04■□□□□ 0.8
ITGB1-204ENST00000417122 PCCAP05165 728 aaPredicted RBP20.03■□□□□ 0.8
ITGB1-204ENST00000417122 JDP2Q8WYK2 163 aa20.03■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 370.2 ms