RNA–Protein interactions for RNA: ENST00000414861.6

RIF1-202, Transcript of replication timing regulatory factor 1, humanhuman

TSL 1 (best)

Gene RIF1, Length 2,534 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-202ENST00000414861 SF3B2Q13435 895 aaKnown RBP12.14□□□□□ -0.47
RIF1-202ENST00000414861 TRAPPC3LQ5T215 181 aa12.14□□□□□ -0.47
RIF1-202ENST00000414861 ANKRD44Q8N8A2 993 aa12.14□□□□□ -0.47
RIF1-202ENST00000414861 COL24A1Q17RW2 1714 aa12.14□□□□□ -0.47
RIF1-202ENST00000414861 SSFA2P28290 1259 aa12.13□□□□□ -0.47
RIF1-202ENST00000414861 BAG6P46379 1132 aa12.13□□□□□ -0.47
RIF1-202ENST00000414861 HDAC1Q13547 482 aaPredicted RBP12.13□□□□□ -0.47
RIF1-202ENST00000414861 ADRA2BP18089 450 aa12.13□□□□□ -0.47
RIF1-202ENST00000414861 EPHA10Q5JZY3 1008 aa12.13□□□□□ -0.47
RIF1-202ENST00000414861 PNMA6EA0A0J9YXQ4 647 aa12.12□□□□□ -0.47
RIF1-202ENST00000414861 H7C1W4 665 aa12.12□□□□□ -0.47
RIF1-202ENST00000414861 ZPR1O75312 459 aa12.12□□□□□ -0.47
RIF1-202ENST00000414861 RFC4P35249 363 aa12.12□□□□□ -0.47
RIF1-202ENST00000414861 SYNE4Q8N205 404 aa12.12□□□□□ -0.47
RIF1-202ENST00000414861 BICC1Q9H694 974 aaKnown RBP12.12□□□□□ -0.47
RIF1-202ENST00000414861 TFCP2L1Q9NZI6 479 aa12.12□□□□□ -0.47
RIF1-202ENST00000414861 ZNF652Q9Y2D9 606 aa12.12□□□□□ -0.47
RIF1-202ENST00000414861 MYH3P11055 1940 aa12.12□□□□□ -0.47
RIF1-202ENST00000414861 TBC1D9BQ66K14 1250 aa12.12□□□□□ -0.47
RIF1-202ENST00000414861 CLEC4GQ6UXB4 293 aa12.12□□□□□ -0.47
RIF1-202ENST00000414861 CENPQQ7L2Z9 268 aaPredicted RBP12.12□□□□□ -0.47
RIF1-202ENST00000414861 NIP7Q9Y221 180 aaKnown RBP eCLIP12.12□□□□□ -0.47
RIF1-202ENST00000414861 RPAP2Q8IXW5 612 aaPredicted RBP12.11□□□□□ -0.47
RIF1-202ENST00000414861 FAM89AQ96GI7 184 aa12.11□□□□□ -0.47
RIF1-202ENST00000414861 RWDD1Q9H446 243 aaPredicted RBP12.11□□□□□ -0.47
RIF1-202ENST00000414861 QSER1Q2KHR3 1735 aa12.11□□□□□ -0.47
RIF1-202ENST00000414861 DDX60Q8IY21 1712 aaKnown RBP12.11□□□□□ -0.47
RIF1-202ENST00000414861 SUSD4Q5VX71 490 aa12.11□□□□□ -0.47
RIF1-202ENST00000414861 BICDL1Q6ZP65 573 aa12.11□□□□□ -0.47
RIF1-202ENST00000414861 SKAP1Q86WV1 359 aa12.11□□□□□ -0.47
RIF1-202ENST00000414861 PNPLA7Q6ZV29 1317 aa12.11□□□□□ -0.47
RIF1-202ENST00000414861 CASZ1Q86V15 1759 aa12.11□□□□□ -0.47
RIF1-202ENST00000414861 FAM177BA6PVY3 158 aa12.1□□□□□ -0.47
RIF1-202ENST00000414861 RGL2O15211 777 aa12.1□□□□□ -0.47
RIF1-202ENST00000414861 PCCAP05165 728 aaPredicted RBP12.1□□□□□ -0.47
RIF1-202ENST00000414861 LAMB2P55268 1798 aa12.1□□□□□ -0.47
RIF1-202ENST00000414861 ZBTB38Q8NAP3 1195 aaPredicted RBP12.1□□□□□ -0.47
RIF1-202ENST00000414861 GYS1P13807 737 aa12.1□□□□□ -0.47
RIF1-202ENST00000414861 ATP8B2P98198 1209 aa12.1□□□□□ -0.47
RIF1-202ENST00000414861 PPP1R42Q7Z4L9 355 aa12.1□□□□□ -0.47
RIF1-202ENST00000414861 COL23A1Q86Y22 540 aaPredicted RBP12.1□□□□□ -0.47
RIF1-202ENST00000414861 NTSR2O95665 410 aa12.09□□□□□ -0.47
RIF1-202ENST00000414861 TRMT112Q9UI30 125 aaKnown RBP12.09□□□□□ -0.47
RIF1-202ENST00000414861 SRGAP3O43295 1099 aa12.09□□□□□ -0.47
RIF1-202ENST00000414861 HMGB2P26583 209 aaKnown RBP12.09□□□□□ -0.47
RIF1-202ENST00000414861 FOXO4P98177 505 aa12.09□□□□□ -0.47
RIF1-202ENST00000414861 MTX1Q13505 466 aa12.09□□□□□ -0.47
RIF1-202ENST00000414861 PARP10Q53GL7 1025 aa12.09□□□□□ -0.47
RIF1-202ENST00000414861 CCDC125Q86Z20 511 aa12.09□□□□□ -0.47
RIF1-202ENST00000414861 SLC15A2Q16348 729 aa12.08□□□□□ -0.48
RIF1-202ENST00000414861 RABL6Q3YEC7 729 aaPredicted RBP12.08□□□□□ -0.48
RIF1-202ENST00000414861 SMC5Q8IY18 1101 aa12.08□□□□□ -0.48
RIF1-202ENST00000414861 SSH3Q8TE77 659 aa12.08□□□□□ -0.48
RIF1-202ENST00000414861 CDHR2Q9BYE9 1310 aa12.08□□□□□ -0.48
RIF1-202ENST00000414861 POLA2Q14181 598 aa12.08□□□□□ -0.48
RIF1-202ENST00000414861 NFIXQ14938 502 aa12.08□□□□□ -0.48
RIF1-202ENST00000414861 NUTM1Q86Y26 1132 aa12.08□□□□□ -0.48
RIF1-202ENST00000414861 UPF1Q92900 1129 aaKnown RBP eCLIP12.08□□□□□ -0.48
RIF1-202ENST00000414861 UTP14AQ9BVJ6 771 aaKnown RBP12.08□□□□□ -0.48
RIF1-202ENST00000414861 SH3TC1Q8TE82 1336 aa12.07□□□□□ -0.48
RIF1-202ENST00000414861 HDAC5Q9UQL6 1122 aa12.07□□□□□ -0.48
RIF1-202ENST00000414861 ABCC12Q96J65 1359 aa12.07□□□□□ -0.48
RIF1-202ENST00000414861 IRS4O14654 1257 aaPredicted RBP12.07□□□□□ -0.48
RIF1-202ENST00000414861 HMMRO75330 724 aa12.07□□□□□ -0.48
RIF1-202ENST00000414861 LMBR1LQ6UX01 489 aa12.07□□□□□ -0.48
RIF1-202ENST00000414861 STK32BQ9NY57 414 aa12.07□□□□□ -0.48
RIF1-202ENST00000414861 MSH5O43196 834 aa12.06□□□□□ -0.48
RIF1-202ENST00000414861 SETDB2Q96T68 719 aa12.06□□□□□ -0.48
RIF1-202ENST00000414861 PLA2G12BQ9BX93 195 aa12.06□□□□□ -0.48
RIF1-202ENST00000414861 DCTPP1Q9H773 170 aa12.06□□□□□ -0.48
RIF1-202ENST00000414861 EXOC6BQ9Y2D4 811 aa12.06□□□□□ -0.48
RIF1-202ENST00000414861 HCLS1P14317 486 aaPredicted RBP12.06□□□□□ -0.48
RIF1-202ENST00000414861 KLHDC4Q8TBB5 520 aa12.06□□□□□ -0.48
RIF1-202ENST00000414861 PDGFDQ9GZP0 370 aaPredicted RBP12.06□□□□□ -0.48
RIF1-202ENST00000414861 PA2G4Q9UQ80 394 aaKnown RBP12.06□□□□□ -0.48
RIF1-202ENST00000414861 TNRC6CQ9HCJ0 1690 aaKnown RBP12.06□□□□□ -0.48
RIF1-202ENST00000414861 CARMIL3Q8ND23 1372 aa12.06□□□□□ -0.48
RIF1-202ENST00000414861 ERFEQ4G0M1 354 aa12.05□□□□□ -0.48
RIF1-202ENST00000414861 CCDC85AQ96PX6 553 aaPredicted RBP12.05□□□□□ -0.48
RIF1-202ENST00000414861 PDZRN3Q9UPQ7 1066 aa12.05□□□□□ -0.48
RIF1-202ENST00000414861 RFX5P48382 616 aaPredicted RBP12.05□□□□□ -0.48
RIF1-202ENST00000414861 DDR1Q08345 913 aa12.05□□□□□ -0.48
RIF1-202ENST00000414861 FAM161AQ3B820 660 aa12.05□□□□□ -0.48
RIF1-202ENST00000414861 ILDR2Q71H61 639 aa12.05□□□□□ -0.48
RIF1-202ENST00000414861 NBPF5PQ86XG9 351 aaPredicted RBP12.05□□□□□ -0.48
RIF1-202ENST00000414861 CCDC24Q8N4L8 307 aa12.05□□□□□ -0.48
RIF1-202ENST00000414861 FLAD1Q8NFF5 587 aa12.05□□□□□ -0.48
RIF1-202ENST00000414861 GCC1Q96CN9 775 aa12.05□□□□□ -0.48
RIF1-202ENST00000414861 CHMP3Q9Y3E7 222 aa12.05□□□□□ -0.48
RIF1-202ENST00000414861 APBB1O00213 710 aa12.04□□□□□ -0.48
RIF1-202ENST00000414861 CTSWP56202 376 aa12.04□□□□□ -0.48
RIF1-202ENST00000414861 MSL1Q68DK7 614 aa12.04□□□□□ -0.48
RIF1-202ENST00000414861 TAF1P21675 1872 aa12.04□□□□□ -0.48
RIF1-202ENST00000414861 COL4A1P02462 1669 aa12.04□□□□□ -0.48
RIF1-202ENST00000414861 TM4SF1P30408 202 aa12.04□□□□□ -0.48
RIF1-202ENST00000414861 C3orf67Q6ZVT6 689 aa12.04□□□□□ -0.48
RIF1-202ENST00000414861 TTLL11Q8NHH1 800 aa12.04□□□□□ -0.48
RIF1-202ENST00000414861 PDE8AO60658 829 aa12.03□□□□□ -0.48
RIF1-202ENST00000414861 CSF1RP07333 972 aa12.03□□□□□ -0.48
RIF1-202ENST00000414861 NUCB1Q02818 461 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms