RNA–Protein interactions for RNA: ENST00000414700.7

SHMT2-202, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 2,006 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-202ENST00000414700 UBE3BQ7Z3V4 1068 aa19.42■□□□□ 0.7
SHMT2-202ENST00000414700 CCDC191Q8NCU4 936 aa19.42■□□□□ 0.7
SHMT2-202ENST00000414700 KAZALD1Q96I82 304 aa19.42■□□□□ 0.7
SHMT2-202ENST00000414700 TRAPPC3LQ5T215 181 aa19.42■□□□□ 0.7
SHMT2-202ENST00000414700 AKT1S1Q96B36 256 aa19.42■□□□□ 0.7
SHMT2-202ENST00000414700 NARFQ9UHQ1 456 aa19.42■□□□□ 0.7
SHMT2-202ENST00000414700 SF3B2Q13435 895 aaKnown RBP19.41■□□□□ 0.7
SHMT2-202ENST00000414700 NLRP10Q86W26 655 aa19.41■□□□□ 0.7
SHMT2-202ENST00000414700 ZNF34Q8IZ26 560 aa19.41■□□□□ 0.7
SHMT2-202ENST00000414700 SUCLG2Q96I99 432 aa19.41■□□□□ 0.7
SHMT2-202ENST00000414700 CASP7P55210 303 aa19.41■□□□□ 0.7
SHMT2-202ENST00000414700 TRIM28Q13263 835 aaKnown RBP19.41■□□□□ 0.7
SHMT2-202ENST00000414700 IBTKQ9P2D0 1353 aaPredicted RBP19.4■□□□□ 0.7
SHMT2-202ENST00000414700 RFC4P35249 363 aa19.4■□□□□ 0.7
SHMT2-202ENST00000414700 BAG6P46379 1132 aa19.4■□□□□ 0.7
SHMT2-202ENST00000414700 HSP90AB3PQ58FF7 597 aa19.4■□□□□ 0.7
SHMT2-202ENST00000414700 SYNE4Q8N205 404 aa19.4■□□□□ 0.7
SHMT2-202ENST00000414700 ZBTB47Q9UFB7 747 aaPredicted RBP19.4■□□□□ 0.7
SHMT2-202ENST00000414700 USP42Q9H9J4 1324 aaKnown RBP19.39■□□□□ 0.7
SHMT2-202ENST00000414700 PNMA6EA0A0J9YXQ4 647 aa19.39■□□□□ 0.69
SHMT2-202ENST00000414700 ANKRD44Q8N8A2 993 aa19.39■□□□□ 0.69
SHMT2-202ENST00000414700 TFCP2L1Q9NZI6 479 aa19.39■□□□□ 0.69
SHMT2-202ENST00000414700 H7C1W4 665 aa19.39■□□□□ 0.69
SHMT2-202ENST00000414700 ZPR1O75312 459 aa19.39■□□□□ 0.69
SHMT2-202ENST00000414700 SSFA2P28290 1259 aa19.39■□□□□ 0.69
SHMT2-202ENST00000414700 HDAC1Q13547 482 aaPredicted RBP19.39■□□□□ 0.69
SHMT2-202ENST00000414700 EPHA10Q5JZY3 1008 aa19.39■□□□□ 0.69
SHMT2-202ENST00000414700 FAM89AQ96GI7 184 aa19.39■□□□□ 0.69
SHMT2-202ENST00000414700 NIP7Q9Y221 180 aaKnown RBP eCLIP19.39■□□□□ 0.69
SHMT2-202ENST00000414700 FAM177BA6PVY3 158 aa19.38■□□□□ 0.69
SHMT2-202ENST00000414700 SKAP1Q86WV1 359 aa19.38■□□□□ 0.69
SHMT2-202ENST00000414700 RWDD1Q9H446 243 aaPredicted RBP19.38■□□□□ 0.69
SHMT2-202ENST00000414700 BICC1Q9H694 974 aaKnown RBP19.38■□□□□ 0.69
SHMT2-202ENST00000414700 TBC1D9BQ66K14 1250 aa19.37■□□□□ 0.69
SHMT2-202ENST00000414700 CLEC4GQ6UXB4 293 aa19.37■□□□□ 0.69
SHMT2-202ENST00000414700 BICDL1Q6ZP65 573 aa19.37■□□□□ 0.69
SHMT2-202ENST00000414700 RPAP2Q8IXW5 612 aaPredicted RBP19.37■□□□□ 0.69
SHMT2-202ENST00000414700 ADRA2BP18089 450 aa19.37■□□□□ 0.69
SHMT2-202ENST00000414700 SUSD4Q5VX71 490 aa19.37■□□□□ 0.69
SHMT2-202ENST00000414700 CENPQQ7L2Z9 268 aaPredicted RBP19.37■□□□□ 0.69
SHMT2-202ENST00000414700 ZNF652Q9Y2D9 606 aa19.37■□□□□ 0.69
SHMT2-202ENST00000414700 PPP1R42Q7Z4L9 355 aa19.35■□□□□ 0.69
SHMT2-202ENST00000414700 TRMT112Q9UI30 125 aaKnown RBP19.35■□□□□ 0.69
SHMT2-202ENST00000414700 ATP8B2P98198 1209 aa19.35■□□□□ 0.69
SHMT2-202ENST00000414700 COL23A1Q86Y22 540 aaPredicted RBP19.35■□□□□ 0.69
SHMT2-202ENST00000414700 ZBTB38Q8NAP3 1195 aaPredicted RBP19.35■□□□□ 0.69
SHMT2-202ENST00000414700 PCCAP05165 728 aaPredicted RBP19.34■□□□□ 0.69
SHMT2-202ENST00000414700 PNPLA7Q6ZV29 1317 aa19.34■□□□□ 0.69
SHMT2-202ENST00000414700 GYS1P13807 737 aa19.34■□□□□ 0.69
SHMT2-202ENST00000414700 SRGAP3O43295 1099 aa19.33■□□□□ 0.68
SHMT2-202ENST00000414700 FOXO4P98177 505 aa19.33■□□□□ 0.68
SHMT2-202ENST00000414700 SLC15A2Q16348 729 aa19.32■□□□□ 0.68
SHMT2-202ENST00000414700 NUTM1Q86Y26 1132 aa19.32■□□□□ 0.68
SHMT2-202ENST00000414700 CCDC125Q86Z20 511 aa19.32■□□□□ 0.68
SHMT2-202ENST00000414700 IL27Q8NEV9 243 aa19.32■□□□□ 0.68
SHMT2-202ENST00000414700 COL24A1Q17RW2 1714 aa19.32■□□□□ 0.68
SHMT2-202ENST00000414700 NTSR2O95665 410 aa19.32■□□□□ 0.68
SHMT2-202ENST00000414700 HMGB2P26583 209 aaKnown RBP19.32■□□□□ 0.68
SHMT2-202ENST00000414700 MTX1Q13505 466 aa19.32■□□□□ 0.68
SHMT2-202ENST00000414700 PARP10Q53GL7 1025 aa19.32■□□□□ 0.68
SHMT2-202ENST00000414700 SMC5Q8IY18 1101 aa19.32■□□□□ 0.68
SHMT2-202ENST00000414700 SSH3Q8TE77 659 aa19.32■□□□□ 0.68
SHMT2-202ENST00000414700 RGL2O15211 777 aa19.31■□□□□ 0.68
SHMT2-202ENST00000414700 UPF1Q92900 1129 aaKnown RBP eCLIP19.31■□□□□ 0.684e-7■■■■□ 25.7
SHMT2-202ENST00000414700 UTP14AQ9BVJ6 771 aaKnown RBP19.31■□□□□ 0.68
SHMT2-202ENST00000414700 MYH3P11055 1940 aa19.31■□□□□ 0.68
SHMT2-202ENST00000414700 POLA2Q14181 598 aa19.3■□□□□ 0.68
SHMT2-202ENST00000414700 NFIXQ14938 502 aa19.3■□□□□ 0.68
SHMT2-202ENST00000414700 RABL6Q3YEC7 729 aaPredicted RBP19.3■□□□□ 0.68
SHMT2-202ENST00000414700 SETDB2Q96T68 719 aa19.3■□□□□ 0.68
SHMT2-202ENST00000414700 DDX60Q8IY21 1712 aaKnown RBP19.3■□□□□ 0.68
SHMT2-202ENST00000414700 IRS4O14654 1257 aaPredicted RBP19.3■□□□□ 0.68
SHMT2-202ENST00000414700 LMBR1LQ6UX01 489 aa19.3■□□□□ 0.68
SHMT2-202ENST00000414700 DCTPP1Q9H773 170 aa19.3■□□□□ 0.68
SHMT2-202ENST00000414700 HDAC5Q9UQL6 1122 aa19.3■□□□□ 0.68
SHMT2-202ENST00000414700 HMMRO75330 724 aa19.29■□□□□ 0.68
SHMT2-202ENST00000414700 HCLS1P14317 486 aaPredicted RBP19.29■□□□□ 0.68
SHMT2-202ENST00000414700 KLHDC4Q8TBB5 520 aa19.29■□□□□ 0.68
SHMT2-202ENST00000414700 EXOC6BQ9Y2D4 811 aa19.29■□□□□ 0.68
SHMT2-202ENST00000414700 GOLGB1Q14789 3259 aaKnown RBP19.29■□□□□ 0.68
SHMT2-202ENST00000414700 SH3TC1Q8TE82 1336 aa19.29■□□□□ 0.68
SHMT2-202ENST00000414700 CDHR2Q9BYE9 1310 aa19.29■□□□□ 0.68
SHMT2-202ENST00000414700 CCDC85AQ96PX6 553 aaPredicted RBP19.29■□□□□ 0.68
SHMT2-202ENST00000414700 PDGFDQ9GZP0 370 aaPredicted RBP19.29■□□□□ 0.68
SHMT2-202ENST00000414700 STK32BQ9NY57 414 aa19.29■□□□□ 0.68
SHMT2-202ENST00000414700 PA2G4Q9UQ80 394 aaKnown RBP19.29■□□□□ 0.68
SHMT2-202ENST00000414700 CCDC24Q8N4L8 307 aa19.28■□□□□ 0.68
SHMT2-202ENST00000414700 APBB1O00213 710 aa19.27■□□□□ 0.68
SHMT2-202ENST00000414700 ERFEQ4G0M1 354 aa19.27■□□□□ 0.68
SHMT2-202ENST00000414700 PDZRN3Q9UPQ7 1066 aa19.27■□□□□ 0.68
SHMT2-202ENST00000414700 CASZ1Q86V15 1759 aa19.27■□□□□ 0.67
SHMT2-202ENST00000414700 GCC1Q96CN9 775 aa19.27■□□□□ 0.67
SHMT2-202ENST00000414700 PLA2G12BQ9BX93 195 aa19.27■□□□□ 0.67
SHMT2-202ENST00000414700 CHMP3Q9Y3E7 222 aa19.27■□□□□ 0.67
SHMT2-202ENST00000414700 QSER1Q2KHR3 1735 aa19.26■□□□□ 0.67
SHMT2-202ENST00000414700 NBPF5PQ86XG9 351 aaPredicted RBP19.26■□□□□ 0.67
SHMT2-202ENST00000414700 ABCC12Q96J65 1359 aa19.26■□□□□ 0.67
SHMT2-202ENST00000414700 ILDR2Q71H61 639 aa19.25■□□□□ 0.67
SHMT2-202ENST00000414700 FLAD1Q8NFF5 587 aa19.25■□□□□ 0.67
SHMT2-202ENST00000414700 LAMB2P55268 1798 aa19.25■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 93.9 ms