RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 CWF19L2Q2TBE0 894 aaKnown RBP16.52■□□□□ 0.24
LIMS1-205ENST00000410093 RILPL2Q969X0 211 aa16.52■□□□□ 0.24
LIMS1-205ENST00000410093 GBP4Q96PP9 640 aa16.52■□□□□ 0.24
LIMS1-205ENST00000410093 USP16Q9Y5T5 823 aa16.52■□□□□ 0.24
LIMS1-205ENST00000410093 KCPQ6ZWJ8 1503 aa16.52■□□□□ 0.23
LIMS1-205ENST00000410093 IFIT2P09913 472 aaKnown RBP16.51■□□□□ 0.23
LIMS1-205ENST00000410093 MYL6BP14649 208 aa16.51■□□□□ 0.23
LIMS1-205ENST00000410093 VSIG10Q8N0Z9 540 aa16.51■□□□□ 0.23
LIMS1-205ENST00000410093 IL1RAPL2Q9NP60 686 aa16.51■□□□□ 0.23
LIMS1-205ENST00000410093 ECHDC1Q9NTX5 307 aa16.51■□□□□ 0.23
LIMS1-205ENST00000410093 NUP188Q5SRE5 1749 aa16.51■□□□□ 0.23
LIMS1-205ENST00000410093 MCM4P33991 863 aa16.5■□□□□ 0.23
LIMS1-205ENST00000410093 TICAM2Q86XR7 235 aa16.5■□□□□ 0.23
LIMS1-205ENST00000410093 MARCH10Q8NA82 808 aaPredicted RBP16.5■□□□□ 0.23
LIMS1-205ENST00000410093 SUCLG2Q96I99 432 aa16.5■□□□□ 0.23
LIMS1-205ENST00000410093 CAMKK2Q96RR4 588 aa16.5■□□□□ 0.23
LIMS1-205ENST00000410093 RABL6Q3YEC7 729 aaPredicted RBP16.5■□□□□ 0.23
LIMS1-205ENST00000410093 NBPF14Q5TI25 921 aa16.5■□□□□ 0.23
LIMS1-205ENST00000410093 MYD88Q99836 296 aa16.5■□□□□ 0.23
LIMS1-205ENST00000410093 BCL11BQ9C0K0 894 aaPredicted RBP16.5■□□□□ 0.23
LIMS1-205ENST00000410093 BICC1Q9H694 974 aaKnown RBP16.5■□□□□ 0.23
LIMS1-205ENST00000410093 COPRSQ9NQ92 184 aa16.5■□□□□ 0.23
LIMS1-205ENST00000410093 NUCB2P80303 420 aa16.49■□□□□ 0.23
LIMS1-205ENST00000410093 RAB3GAP1Q15042 981 aa16.49■□□□□ 0.23
LIMS1-205ENST00000410093 NUTM1Q86Y26 1132 aa16.49■□□□□ 0.23
LIMS1-205ENST00000410093 KAZALD1Q96I82 304 aa16.49■□□□□ 0.23
LIMS1-205ENST00000410093 BCL11AQ9H165 835 aa16.49■□□□□ 0.23
LIMS1-205ENST00000410093 TNS1Q9HBL0 1735 aaKnown RBP16.48■□□□□ 0.23
LIMS1-205ENST00000410093 PSDA5PKW4 1024 aaPredicted RBP16.48■□□□□ 0.23
LIMS1-205ENST00000410093 CLEC17AQ6ZS10 378 aa16.48■□□□□ 0.23
LIMS1-205ENST00000410093 EVI5LQ96CN4 794 aa16.48■□□□□ 0.23
LIMS1-205ENST00000410093 WNK3Q9BYP7 1800 aa16.47■□□□□ 0.23
LIMS1-205ENST00000410093 KIAA1211Q6ZU35 1233 aa16.47■□□□□ 0.23
LIMS1-205ENST00000410093 SGSM2O43147 1006 aa16.46■□□□□ 0.23
LIMS1-205ENST00000410093 SKOR2Q2VWA4 1001 aaPredicted RBP16.46■□□□□ 0.23
LIMS1-205ENST00000410093 ANO2Q9NQ90 1003 aa16.46■□□□□ 0.23
LIMS1-205ENST00000410093 PLSCR1O15162 318 aa16.45■□□□□ 0.22
LIMS1-205ENST00000410093 R3HDM1Q15032 1099 aaKnown RBP16.45■□□□□ 0.22
LIMS1-205ENST00000410093 SPRYD3Q8NCJ5 442 aa16.45■□□□□ 0.22
LIMS1-205ENST00000410093 CCDC191Q8NCU4 936 aa16.45■□□□□ 0.22
LIMS1-205ENST00000410093 ATG3Q9NT62 314 aa16.45■□□□□ 0.22
LIMS1-205ENST00000410093 TMOD3Q9NYL9 352 aa16.45■□□□□ 0.22
LIMS1-205ENST00000410093 RAD50Q92878 1312 aa16.45■□□□□ 0.22
LIMS1-205ENST00000410093 TOGARAM1Q9Y4F4 1720 aa16.45■□□□□ 0.22
LIMS1-205ENST00000410093 BCL9O00512 1426 aa16.45■□□□□ 0.22
LIMS1-205ENST00000410093 GOLGA6L22H0YM25 854 aa16.45■□□□□ 0.22
LIMS1-205ENST00000410093 HSPA4P34932 840 aa16.45■□□□□ 0.22
LIMS1-205ENST00000410093 TSHZ3Q63HK5 1081 aa16.45■□□□□ 0.22
LIMS1-205ENST00000410093 DDX54Q8TDD1 881 aaKnown RBP16.45■□□□□ 0.22
LIMS1-205ENST00000410093 RBM42Q9BTD8 480 aaKnown RBP16.45■□□□□ 0.22
LIMS1-205ENST00000410093 CWC25Q9NXE8 425 aaPredicted RBP16.45■□□□□ 0.22
LIMS1-205ENST00000410093 RFX7Q2KHR2 1363 aa16.44■□□□□ 0.22
LIMS1-205ENST00000410093 ITGB4P16144 1822 aa16.44■□□□□ 0.22
LIMS1-205ENST00000410093 H7C1W4 665 aa16.44■□□□□ 0.22
LIMS1-205ENST00000410093 CD2BP2O95400 341 aaKnown RBP16.44■□□□□ 0.22
LIMS1-205ENST00000410093 AACSQ86V21 672 aa16.44■□□□□ 0.22
LIMS1-205ENST00000410093 INTS4Q96HW7 963 aaKnown RBP16.44■□□□□ 0.22
LIMS1-205ENST00000410093 DIAPH3Q9NSV4 1193 aa16.44■□□□□ 0.22
LIMS1-205ENST00000410093 A0A087WZG4 1122 aa16.43■□□□□ 0.22
LIMS1-205ENST00000410093 SASH1O94885 1247 aa16.43■□□□□ 0.22
LIMS1-205ENST00000410093 TRIM28Q13263 835 aaKnown RBP16.43■□□□□ 0.22
LIMS1-205ENST00000410093 ACSBG1Q96GR2 724 aa16.43■□□□□ 0.22
LIMS1-205ENST00000410093 FBXO3Q9UK99 471 aa16.43■□□□□ 0.22
LIMS1-205ENST00000410093 ISY1Q9ULR0 285 aaKnown RBP16.43■□□□□ 0.22
LIMS1-205ENST00000410093 STARD3NLO95772 234 aa16.42■□□□□ 0.22
LIMS1-205ENST00000410093 CASP7P55210 303 aa16.42■□□□□ 0.22
LIMS1-205ENST00000410093 GPR108Q9NPR9 543 aa16.42■□□□□ 0.22
LIMS1-205ENST00000410093 SNRKQ9NRH2 765 aa16.42■□□□□ 0.22
LIMS1-205ENST00000410093 NBPF26B4DH59 902 aa16.41■□□□□ 0.22
LIMS1-205ENST00000410093 NEK4P51957 841 aa16.41■□□□□ 0.22
LIMS1-205ENST00000410093 NBPF10Q6P3W6 841 aaKnown RBP16.41■□□□□ 0.22
LIMS1-205ENST00000410093 NBPF15Q8N660 670 aa16.41■□□□□ 0.22
LIMS1-205ENST00000410093 TNPO1Q92973 898 aaKnown RBP16.41■□□□□ 0.22
LIMS1-205ENST00000410093 PA2G4Q9UQ80 394 aaKnown RBP16.41■□□□□ 0.22
LIMS1-205ENST00000410093 TJP1Q07157 1748 aa16.41■□□□□ 0.22
LIMS1-205ENST00000410093 RFX5P48382 616 aaPredicted RBP16.4■□□□□ 0.22
LIMS1-205ENST00000410093 UBE3BQ7Z3V4 1068 aa16.4■□□□□ 0.22
LIMS1-205ENST00000410093 PTPN12Q05209 780 aaKnown RBP16.4■□□□□ 0.22
LIMS1-205ENST00000410093 CUL4AQ13619 759 aa16.4■□□□□ 0.22
LIMS1-205ENST00000410093 EAF2Q96CJ1 260 aaPredicted RBP16.4■□□□□ 0.22
LIMS1-205ENST00000410093 SRCAPQ6ZRS2 3230 aa16.39■□□□□ 0.21
LIMS1-205ENST00000410093 SBF2Q86WG5 1849 aa16.39■□□□□ 0.21
LIMS1-205ENST00000410093 KCNQ2O43526 872 aa16.39■□□□□ 0.21
LIMS1-205ENST00000410093 ATP5JP18859 108 aa16.39■□□□□ 0.21
LIMS1-205ENST00000410093 HSP90AB3PQ58FF7 597 aa16.39■□□□□ 0.21
LIMS1-205ENST00000410093 L1TD1Q5T7N2 865 aaKnown RBP16.39■□□□□ 0.21
LIMS1-205ENST00000410093 PTF1AQ7RTS3 328 aa16.39■□□□□ 0.21
LIMS1-205ENST00000410093 SYTL4Q96C24 671 aaPredicted RBP16.39■□□□□ 0.21
LIMS1-205ENST00000410093 TM6SF1Q9BZW5 370 aa16.39■□□□□ 0.21
LIMS1-205ENST00000410093 LSG1Q9H089 658 aaKnown RBP16.39■□□□□ 0.21
LIMS1-205ENST00000410093 KAT6BQ8WYB5 2073 aa16.38■□□□□ 0.21
LIMS1-205ENST00000410093 TRAK2O60296 914 aa16.38■□□□□ 0.21
LIMS1-205ENST00000410093 CIAO1O76071 339 aa16.38■□□□□ 0.21
LIMS1-205ENST00000410093 KIF6Q6ZMV9 814 aa16.38■□□□□ 0.21
LIMS1-205ENST00000410093 KCNB2Q92953 911 aa16.38■□□□□ 0.21
LIMS1-205ENST00000410093 SPEF2Q9C093 1822 aa16.38■□□□□ 0.21
LIMS1-205ENST00000410093 IL15P40933 162 aaPredicted RBP16.37■□□□□ 0.21
LIMS1-205ENST00000410093 EPHA10Q5JZY3 1008 aa16.37■□□□□ 0.21
LIMS1-205ENST00000410093 ISCA1Q9BUE6 129 aa16.37■□□□□ 0.21
LIMS1-205ENST00000410093 CYP2E1P05181 493 aaPredicted RBP16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms