RNA–Protein interactions for RNA: ENST00000409694.6

SYNE1-210, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,634 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-210ENST00000409694 C16orf45Q96MC5 204 aaPredicted RBP8.99□□□□□ -0.97
SYNE1-210ENST00000409694 NUF2Q9BZD4 464 aa8.99□□□□□ -0.97
SYNE1-210ENST00000409694 HECW1Q76N89 1606 aa8.99□□□□□ -0.97
SYNE1-210ENST00000409694 FYB2Q5VWT5 728 aa8.98□□□□□ -0.97
SYNE1-210ENST00000409694 EBAG9O00559 213 aa8.98□□□□□ -0.97
SYNE1-210ENST00000409694 CRCPO75575 148 aa8.98□□□□□ -0.97
SYNE1-210ENST00000409694 BICD1Q96G01 975 aa8.98□□□□□ -0.97
SYNE1-210ENST00000409694 PUF60Q9UHX1 559 aaKnown RBP8.98□□□□□ -0.97
SYNE1-210ENST00000409694 B4GALNT4Q76KP1 1039 aa8.98□□□□□ -0.97
SYNE1-210ENST00000409694 SLC4A2P04920 1241 aa8.98□□□□□ -0.97
SYNE1-210ENST00000409694 GBP6Q6ZN66 633 aa8.98□□□□□ -0.97
SYNE1-210ENST00000409694 RNF168Q8IYW5 571 aaPredicted RBP8.98□□□□□ -0.97
SYNE1-210ENST00000409694 SIL1Q9H173 461 aa8.98□□□□□ -0.97
SYNE1-210ENST00000409694 TTF1Q15361 905 aaPredicted RBP8.98□□□□□ -0.97
SYNE1-210ENST00000409694 PHLDB2Q86SQ0 1253 aa8.98□□□□□ -0.97
SYNE1-210ENST00000409694 IMPG2Q9BZV3 1241 aa8.98□□□□□ -0.97
SYNE1-210ENST00000409694 WIZO95785 1651 aa8.98□□□□□ -0.97
SYNE1-210ENST00000409694 ZNF853P0CG23 659 aa8.98□□□□□ -0.97
SYNE1-210ENST00000409694 ERICH3Q5RHP9 1530 aa8.98□□□□□ -0.97
SYNE1-210ENST00000409694 MAP3K12Q12852 859 aa8.98□□□□□ -0.97
SYNE1-210ENST00000409694 MTRF1LQ9UGC7 380 aaKnown RBP8.98□□□□□ -0.97
SYNE1-210ENST00000409694 TMC6Q7Z403 805 aa8.97□□□□□ -0.97
SYNE1-210ENST00000409694 ARFGAP2Q8N6H7 521 aa8.97□□□□□ -0.97
SYNE1-210ENST00000409694 HVCN1Q96D96 273 aa8.97□□□□□ -0.97
SYNE1-210ENST00000409694 CTAGE15A4D2H0 777 aa8.97□□□□□ -0.97
SYNE1-210ENST00000409694 CTAGE8P0CG41 777 aa8.97□□□□□ -0.97
SYNE1-210ENST00000409694 DNA2P51530 1060 aa8.97□□□□□ -0.97
SYNE1-210ENST00000409694 TSNAXIP1Q2TAA8 658 aa8.97□□□□□ -0.97
SYNE1-210ENST00000409694 RSPH3Q86UC2 560 aa8.97□□□□□ -0.97
SYNE1-210ENST00000409694 CTAGE6Q86UF2 777 aa8.97□□□□□ -0.97
SYNE1-210ENST00000409694 ZNF354CQ86Y25 554 aa8.97□□□□□ -0.97
SYNE1-210ENST00000409694 CTAGE4Q8IX94 777 aa8.97□□□□□ -0.97
SYNE1-210ENST00000409694 SPAG5Q96R06 1193 aa8.97□□□□□ -0.97
SYNE1-210ENST00000409694 GLRX3O76003 335 aaKnown RBP8.97□□□□□ -0.97
SYNE1-210ENST00000409694 STARD3NLO95772 234 aa8.97□□□□□ -0.97
SYNE1-210ENST00000409694 ARHGAP24Q8N264 748 aa8.97□□□□□ -0.97
SYNE1-210ENST00000409694 PPP1R1BQ9UD71 204 aaPredicted RBP8.97□□□□□ -0.97
SYNE1-210ENST00000409694 NCBP1Q09161 790 aaKnown RBP8.97□□□□□ -0.97
SYNE1-210ENST00000409694 ZBTB17Q13105 803 aa8.97□□□□□ -0.97
SYNE1-210ENST00000409694 TCERG1LQ5VWI1 586 aa8.97□□□□□ -0.97
SYNE1-210ENST00000409694 CCDC117Q8IWD4 279 aaPredicted RBP8.97□□□□□ -0.97
SYNE1-210ENST00000409694 ZNF710Q8N1W2 664 aa8.97□□□□□ -0.97
SYNE1-210ENST00000409694 SRGAP3O43295 1099 aa8.97□□□□□ -0.97
SYNE1-210ENST00000409694 CLUL1Q15846 466 aa8.97□□□□□ -0.97
SYNE1-210ENST00000409694 SRGAP1Q7Z6B7 1085 aa8.97□□□□□ -0.97
SYNE1-210ENST00000409694 GPR161Q8N6U8 529 aaKnown RBP8.97□□□□□ -0.97
SYNE1-210ENST00000409694 HDAC9Q9UKV0 1011 aa8.97□□□□□ -0.97
SYNE1-210ENST00000409694 GOLGA8AA7E2F4 631 aa8.97□□□□□ -0.97
SYNE1-210ENST00000409694 GOLGA8BA8MQT2 603 aa8.97□□□□□ -0.97
SYNE1-210ENST00000409694 NLRP6P59044 892 aa8.97□□□□□ -0.97
SYNE1-210ENST00000409694 GOLGA1Q92805 767 aa8.97□□□□□ -0.97
SYNE1-210ENST00000409694 CSRNP2Q9H175 543 aa8.97□□□□□ -0.97
SYNE1-210ENST00000409694 VPS52Q8N1B4 723 aa8.97□□□□□ -0.97
SYNE1-210ENST00000409694 TBC1D31Q96DN5 1066 aa8.97□□□□□ -0.97
SYNE1-210ENST00000409694 BCAP29Q9UHQ4 241 aa8.97□□□□□ -0.97
SYNE1-210ENST00000409694 ANKRD30BQ9BXX2 1392 aa8.96□□□□□ -0.97
SYNE1-210ENST00000409694 MGEA5O60502 916 aa8.96□□□□□ -0.97
SYNE1-210ENST00000409694 KRT13P13646 458 aa8.96□□□□□ -0.97
SYNE1-210ENST00000409694 CCDC94Q9BW85 323 aaPredicted RBP8.96□□□□□ -0.97
SYNE1-210ENST00000409694 KRT83P78385 493 aa8.96□□□□□ -0.97
SYNE1-210ENST00000409694 ZNF444Q8N0Y2 327 aaPredicted RBP8.96□□□□□ -0.97
SYNE1-210ENST00000409694 KIF1BPQ96EK5 621 aa8.96□□□□□ -0.97
SYNE1-210ENST00000409694 SPAG1Q07617 926 aa8.96□□□□□ -0.97
SYNE1-210ENST00000409694 SLC5A1P13866 664 aa8.96□□□□□ -0.98
SYNE1-210ENST00000409694 VAV2P52735 878 aa8.96□□□□□ -0.98
SYNE1-210ENST00000409694 SUDS3Q9H7L9 328 aaPredicted RBP8.96□□□□□ -0.98
SYNE1-210ENST00000409694 B4DLN1 442 aa8.96□□□□□ -0.98
SYNE1-210ENST00000409694 MRPL12P52815 198 aaKnown RBP8.96□□□□□ -0.98
SYNE1-210ENST00000409694 PDE4BQ07343 736 aa8.96□□□□□ -0.98
SYNE1-210ENST00000409694 BICDL1Q6ZP65 573 aa8.96□□□□□ -0.98
SYNE1-210ENST00000409694 CEP57Q86XR8 500 aa8.96□□□□□ -0.98
SYNE1-210ENST00000409694 IDH1O75874 414 aaKnown RBP8.96□□□□□ -0.98
SYNE1-210ENST00000409694 VCX3AQ9NNX9 186 aa8.96□□□□□ -0.98
SYNE1-210ENST00000409694 RBM28Q9NW13 759 aaKnown RBP8.96□□□□□ -0.98
SYNE1-210ENST00000409694 MTUS1Q9ULD2 1270 aa8.96□□□□□ -0.98
SYNE1-210ENST00000409694 FAM177BA6PVY3 158 aa8.96□□□□□ -0.98
SYNE1-210ENST00000409694 BTBD11A6QL63 1104 aa8.96□□□□□ -0.98
SYNE1-210ENST00000409694 NLRP5P59047 1200 aa8.96□□□□□ -0.98
SYNE1-210ENST00000409694 IRX4P78413 519 aa8.96□□□□□ -0.98
SYNE1-210ENST00000409694 INTS8Q75QN2 995 aaKnown RBP8.96□□□□□ -0.98
SYNE1-210ENST00000409694 NBPF11Q86T75 865 aa8.96□□□□□ -0.98
SYNE1-210ENST00000409694 HAUS8Q9BT25 410 aa8.96□□□□□ -0.98
SYNE1-210ENST00000409694 ZSCAN16Q9H4T2 348 aaPredicted RBP8.96□□□□□ -0.98
SYNE1-210ENST00000409694 IFIT1P09914 478 aaKnown RBP8.95□□□□□ -0.98
SYNE1-210ENST00000409694 MTHFSP49914 203 aa8.95□□□□□ -0.98
SYNE1-210ENST00000409694 SEC62Q99442 399 aaKnown RBP8.95□□□□□ -0.98
SYNE1-210ENST00000409694 ZNF692Q9BU19 519 aaPredicted RBP8.95□□□□□ -0.98
SYNE1-210ENST00000409694 PRDM10Q9NQV6 1147 aa8.95□□□□□ -0.98
SYNE1-210ENST00000409694 MAK16Q9BXY0 300 aaKnown RBP8.95□□□□□ -0.98
SYNE1-210ENST00000409694 CPLX4Q7Z7G2 160 aa8.95□□□□□ -0.98
SYNE1-210ENST00000409694 RPAP2Q8IXW5 612 aaPredicted RBP8.95□□□□□ -0.98
SYNE1-210ENST00000409694 KRT86O43790 486 aa8.95□□□□□ -0.98
SYNE1-210ENST00000409694 ANKIB1Q9P2G1 1089 aa8.95□□□□□ -0.98
SYNE1-210ENST00000409694 CEP85LQ5SZL2 805 aa8.95□□□□□ -0.98
SYNE1-210ENST00000409694 CCDC114Q96M63 670 aa8.95□□□□□ -0.98
SYNE1-210ENST00000409694 RSPH14Q9UHP6 348 aa8.95□□□□□ -0.98
SYNE1-210ENST00000409694 CROCCP2Q86T23 111 aa8.95□□□□□ -0.98
SYNE1-210ENST00000409694 POTEDQ86YR6 584 aa8.95□□□□□ -0.98
SYNE1-210ENST00000409694 HMG20BQ9P0W2 317 aa8.95□□□□□ -0.98
SYNE1-210ENST00000409694 TACC3Q9Y6A5 838 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms