RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 SRCIN1Q9C0H9 1055 aa16.87■□□□□ 0.29
LIMS1-204ENST00000409441 ABCC4O15439 1325 aa16.87■□□□□ 0.29
LIMS1-204ENST00000409441 CCT4P50991 539 aaKnown RBP16.86■□□□□ 0.29
LIMS1-204ENST00000409441 INTS3Q68E01 1043 aaKnown RBP16.86■□□□□ 0.29
LIMS1-204ENST00000409441 TMEM57Q8N5G2 664 aa16.86■□□□□ 0.29
LIMS1-204ENST00000409441 C4AP0C0L4 1744 aa16.86■□□□□ 0.29
LIMS1-204ENST00000409441 QSER1Q2KHR3 1735 aa16.86■□□□□ 0.29
LIMS1-204ENST00000409441 NEURL1BA8MQ27 555 aa16.85■□□□□ 0.29
LIMS1-204ENST00000409441 NLRP10Q86W26 655 aa16.85■□□□□ 0.29
LIMS1-204ENST00000409441 CCDC191Q8NCU4 936 aa16.85■□□□□ 0.29
LIMS1-204ENST00000409441 ATP10DQ9P241 1426 aa16.85■□□□□ 0.29
LIMS1-204ENST00000409441 ALDH1L1O75891 902 aa16.85■□□□□ 0.29
LIMS1-204ENST00000409441 MMP10P09238 476 aa16.85■□□□□ 0.29
LIMS1-204ENST00000409441 PARP10Q53GL7 1025 aa16.85■□□□□ 0.29
LIMS1-204ENST00000409441 SUSD4Q5VX71 490 aa16.85■□□□□ 0.29
LIMS1-204ENST00000409441 MTFR1LQ9H019 292 aa16.85■□□□□ 0.29
LIMS1-204ENST00000409441 CWC25Q9NXE8 425 aaPredicted RBP16.85■□□□□ 0.29
LIMS1-204ENST00000409441 ATF5Q9Y2D1 282 aaPredicted RBP16.85■□□□□ 0.29
LIMS1-204ENST00000409441 UBN2Q6ZU65 1347 aa16.84■□□□□ 0.29
LIMS1-204ENST00000409441 FAM177BA6PVY3 158 aa16.84■□□□□ 0.29
LIMS1-204ENST00000409441 PDE4AP27815 886 aa16.84■□□□□ 0.29
LIMS1-204ENST00000409441 GCKRQ14397 625 aa16.84■□□□□ 0.29
LIMS1-204ENST00000409441 BACH2Q9BYV9 841 aa16.84■□□□□ 0.29
LIMS1-204ENST00000409441 DDR1Q08345 913 aa16.83■□□□□ 0.28
LIMS1-204ENST00000409441 PPP1R42Q7Z4L9 355 aa16.83■□□□□ 0.28
LIMS1-204ENST00000409441 UTP14AQ9BVJ6 771 aaKnown RBP16.83■□□□□ 0.28
LIMS1-204ENST00000409441 COG6Q9Y2V7 657 aa16.83■□□□□ 0.28
LIMS1-204ENST00000409441 NUP98P52948 1817 aa16.83■□□□□ 0.28
LIMS1-204ENST00000409441 POLRMTO00411 1230 aaKnown RBP16.82■□□□□ 0.28
LIMS1-204ENST00000409441 SERPINB2P05120 415 aa16.82■□□□□ 0.28
LIMS1-204ENST00000409441 ANP32AP39687 249 aaKnown RBP16.82■□□□□ 0.28
LIMS1-204ENST00000409441 TPTE2Q6XPS3 522 aa16.82■□□□□ 0.28
LIMS1-204ENST00000409441 NBPF5PQ86XG9 351 aaPredicted RBP16.82■□□□□ 0.28
LIMS1-204ENST00000409441 ITPRIPQ8IWB1 547 aa16.82■□□□□ 0.28
LIMS1-204ENST00000409441 TRMT112Q9UI30 125 aaKnown RBP16.82■□□□□ 0.28
LIMS1-204ENST00000409441 PARP3Q9Y6F1 533 aa16.82■□□□□ 0.28
LIMS1-204ENST00000409441 SCN7AQ01118 1682 aa16.82■□□□□ 0.28
LIMS1-204ENST00000409441 BCORQ6W2J9 1755 aa16.82■□□□□ 0.28
LIMS1-204ENST00000409441 ARFGEF2Q9Y6D5 1785 aa16.82■□□□□ 0.28
LIMS1-204ENST00000409441 JARID2Q92833 1246 aaPredicted RBP16.81■□□□□ 0.28
LIMS1-204ENST00000409441 ANP32EQ9BTT0 268 aa16.81■□□□□ 0.28
LIMS1-204ENST00000409441 C9orf78Q9NZ63 289 aaPredicted RBP16.81■□□□□ 0.28
LIMS1-204ENST00000409441 CARMIL3Q8ND23 1372 aa16.81■□□□□ 0.28
LIMS1-204ENST00000409441 USP44Q9H0E7 712 aa16.81■□□□□ 0.28
LIMS1-204ENST00000409441 PXDNLA1KZ92 1463 aa16.8■□□□□ 0.28
LIMS1-204ENST00000409441 H7C1W4 665 aa16.8■□□□□ 0.28
LIMS1-204ENST00000409441 NTSR2O95665 410 aa16.8■□□□□ 0.28
LIMS1-204ENST00000409441 GTF2E1P29083 439 aaPredicted RBP16.8■□□□□ 0.28
LIMS1-204ENST00000409441 MVPQ14764 893 aaKnown RBP16.8■□□□□ 0.28
LIMS1-204ENST00000409441 RTL5Q5HYW3 569 aaPredicted RBP16.8■□□□□ 0.28
LIMS1-204ENST00000409441 ZBTB38Q8NAP3 1195 aaPredicted RBP16.8■□□□□ 0.28
LIMS1-204ENST00000409441 FAM89AQ96GI7 184 aa16.8■□□□□ 0.28
LIMS1-204ENST00000409441 NYXQ9GZU5 481 aa16.8■□□□□ 0.28
LIMS1-204ENST00000409441 GRM8O00222 908 aa16.79■□□□□ 0.28
LIMS1-204ENST00000409441 NPHP1O15259 732 aa16.79■□□□□ 0.28
LIMS1-204ENST00000409441 PCCAP05165 728 aaPredicted RBP16.79■□□□□ 0.28
LIMS1-204ENST00000409441 POLD1P28340 1107 aa16.79■□□□□ 0.28
LIMS1-204ENST00000409441 NUTM1Q86Y26 1132 aa16.79■□□□□ 0.28
LIMS1-204ENST00000409441 SYNE4Q8N205 404 aa16.79■□□□□ 0.28
LIMS1-204ENST00000409441 CASZ1Q86V15 1759 aa16.79■□□□□ 0.28
LIMS1-204ENST00000409441 SH3TC1Q8TE82 1336 aa16.78■□□□□ 0.28
LIMS1-204ENST00000409441 ZBTB7BO15156 539 aaPredicted RBP16.78■□□□□ 0.28
LIMS1-204ENST00000409441 NBPF7P0C2Y1 421 aaPredicted RBP16.78■□□□□ 0.28
LIMS1-204ENST00000409441 UBE3BQ7Z3V4 1068 aa16.78■□□□□ 0.28
LIMS1-204ENST00000409441 ERFEQ4G0M1 354 aa16.78■□□□□ 0.28
LIMS1-204ENST00000409441 CCDC24Q8N4L8 307 aa16.78■□□□□ 0.28
LIMS1-204ENST00000409441 CNBD1Q8NA66 436 aa16.78■□□□□ 0.28
LIMS1-204ENST00000409441 SPON1Q9HCB6 807 aa16.78■□□□□ 0.28
LIMS1-204ENST00000409441 DDX19BQ9UMR2 479 aa16.78■□□□□ 0.28
LIMS1-204ENST00000409441 IBTKQ9P2D0 1353 aaPredicted RBP16.77■□□□□ 0.28
LIMS1-204ENST00000409441 UTYO14607 1347 aa16.77■□□□□ 0.27
LIMS1-204ENST00000409441 PRR5LQ6MZQ0 368 aa16.77■□□□□ 0.27
LIMS1-204ENST00000409441 MEIS3Q99687 375 aa16.77■□□□□ 0.27
LIMS1-204ENST00000409441 SGIP1Q9BQI5 828 aa16.77■□□□□ 0.27
LIMS1-204ENST00000409441 GNAI3P08754 354 aa16.76■□□□□ 0.27
LIMS1-204ENST00000409441 PTGER2P43116 358 aa16.76■□□□□ 0.27
LIMS1-204ENST00000409441 CASP7P55210 303 aa16.76■□□□□ 0.27
LIMS1-204ENST00000409441 SLC10A5Q5PT55 438 aa16.76■□□□□ 0.27
LIMS1-204ENST00000409441 IRS4O14654 1257 aaPredicted RBP16.75■□□□□ 0.27
LIMS1-204ENST00000409441 IGHDP01880 384 aa16.75■□□□□ 0.27
LIMS1-204ENST00000409441 UBTFL1P0CB47 393 aaPredicted RBP16.75■□□□□ 0.27
LIMS1-204ENST00000409441 HCLS1P14317 486 aaPredicted RBP16.75■□□□□ 0.27
LIMS1-204ENST00000409441 ERICH6Q7L0X2 663 aa16.75■□□□□ 0.27
LIMS1-204ENST00000409441 ANKRD36CQ5JPF3 1778 aa16.74■□□□□ 0.27
LIMS1-204ENST00000409441 ST5P78524 1137 aa16.74■□□□□ 0.27
LIMS1-204ENST00000409441 CHMP4BQ9H444 224 aaKnown RBP16.74■□□□□ 0.27
LIMS1-204ENST00000409441 CDHR2Q9BYE9 1310 aa16.74■□□□□ 0.27
LIMS1-204ENST00000409441 IPO9Q96P70 1041 aaKnown RBP16.74■□□□□ 0.27
LIMS1-204ENST00000409441 HDAC5Q9UQL6 1122 aa16.74■□□□□ 0.27
LIMS1-204ENST00000409441 HSP90B1P14625 803 aaKnown RBP16.73■□□□□ 0.27
LIMS1-204ENST00000409441 FAM161AQ3B820 660 aa16.73■□□□□ 0.27
LIMS1-204ENST00000409441 SUCLG2Q96I99 432 aa16.73■□□□□ 0.27
LIMS1-204ENST00000409441 BRIP1Q9BX63 1249 aa16.73■□□□□ 0.27
LIMS1-204ENST00000409441 RWDD1Q9H446 243 aaPredicted RBP16.73■□□□□ 0.27
LIMS1-204ENST00000409441 ZBTB40Q9NUA8 1239 aa16.73■□□□□ 0.27
LIMS1-204ENST00000409441 GNAI2P04899 355 aa16.72■□□□□ 0.27
LIMS1-204ENST00000409441 KAZALD1Q96I82 304 aa16.72■□□□□ 0.27
LIMS1-204ENST00000409441 NLRP3Q96P20 1036 aa16.72■□□□□ 0.27
LIMS1-204ENST00000409441 AFDNP55196 1824 aaKnown RBP16.72■□□□□ 0.27
LIMS1-204ENST00000409441 PDE8AO60658 829 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms