RNA–Protein interactions for RNA: ENST00000409031.5

SMPD4-202, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPD4, Length 4,896 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-202ENST00000409031 CEP85Q6P2H3 762 aa20.32■□□□□ 0.84
SMPD4-202ENST00000409031 CTCFLQ8NI51 663 aaPredicted RBP20.32■□□□□ 0.84
SMPD4-202ENST00000409031 CTAGE1Q96RT6 745 aa20.32■□□□□ 0.84
SMPD4-202ENST00000409031 PHACTR2O75167 634 aa20.32■□□□□ 0.84
SMPD4-202ENST00000409031 POLR3DP05423 398 aaPredicted RBP20.32■□□□□ 0.84
SMPD4-202ENST00000409031 SPECC1LQ69YQ0 1117 aa20.32■□□□□ 0.84
SMPD4-202ENST00000409031 UBAC1Q9BSL1 405 aa20.32■□□□□ 0.84
SMPD4-202ENST00000409031 VAMP4O75379 141 aa20.31■□□□□ 0.84
SMPD4-202ENST00000409031 JADE2Q9NQC1 790 aa20.31■□□□□ 0.84
SMPD4-202ENST00000409031 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP20.31■□□□□ 0.84
SMPD4-202ENST00000409031 NPC1L1Q9UHC9 1359 aa20.31■□□□□ 0.84
SMPD4-202ENST00000409031 BRF1Q92994 677 aa20.31■□□□□ 0.84
SMPD4-202ENST00000409031 ADGRF5Q8IZF2 1346 aa20.31■□□□□ 0.84
SMPD4-202ENST00000409031 UGGT2Q9NYU1 1516 aa20.31■□□□□ 0.84
SMPD4-202ENST00000409031 GOLGA8BA8MQT2 603 aa20.31■□□□□ 0.84
SMPD4-202ENST00000409031 HLTFQ14527 1009 aaKnown RBP eCLIP20.31■□□□□ 0.84
SMPD4-202ENST00000409031 ZNF530Q6P9A1 599 aaPredicted RBP20.31■□□□□ 0.84
SMPD4-202ENST00000409031 FYB1O15117 783 aa20.31■□□□□ 0.84
SMPD4-202ENST00000409031 SMC1AQ14683 1233 aaKnown RBP20.31■□□□□ 0.84
SMPD4-202ENST00000409031 CCDC61Q9Y6R9 512 aa20.31■□□□□ 0.84
SMPD4-202ENST00000409031 ARHGEF12Q9NZN5 1544 aa20.31■□□□□ 0.84
SMPD4-202ENST00000409031 CBX8Q9HC52 389 aa20.3■□□□□ 0.84
SMPD4-202ENST00000409031 ATP8B2P98198 1209 aa20.3■□□□□ 0.84
SMPD4-202ENST00000409031 BCCIPQ9P287 314 aaKnown RBP eCLIP20.3■□□□□ 0.84
SMPD4-202ENST00000409031 USP16Q9Y5T5 823 aa20.3■□□□□ 0.84
SMPD4-202ENST00000409031 N4BP3O15049 544 aa20.3■□□□□ 0.84
SMPD4-202ENST00000409031 ZSCAN26Q16670 478 aa20.3■□□□□ 0.84
SMPD4-202ENST00000409031 KRT18P05783 430 aaKnown RBP20.29■□□□□ 0.84
SMPD4-202ENST00000409031 DNAJC21Q5F1R6 531 aaKnown RBP20.29■□□□□ 0.84
SMPD4-202ENST00000409031 NUTM2GQ5VZR2 741 aa20.29■□□□□ 0.84
SMPD4-202ENST00000409031 MAATS1Q7Z4T9 603 aa20.29■□□□□ 0.84
SMPD4-202ENST00000409031 RNF216Q9NWF9 866 aaPredicted RBP20.29■□□□□ 0.84
SMPD4-202ENST00000409031 ATL3Q6DD88 541 aa20.29■□□□□ 0.84
SMPD4-202ENST00000409031 GIGYF2Q6Y7W6 1299 aaKnown RBP20.29■□□□□ 0.84
SMPD4-202ENST00000409031 TMX4Q9H1E5 349 aaPredicted RBP20.29■□□□□ 0.84
SMPD4-202ENST00000409031 IMPACTQ9P2X3 320 aa20.29■□□□□ 0.84
SMPD4-202ENST00000409031 EMILIN1Q9Y6C2 1016 aa20.29■□□□□ 0.84
SMPD4-202ENST00000409031 GADD45BO75293 160 aaPredicted RBP20.29■□□□□ 0.84
SMPD4-202ENST00000409031 ATRIPQ8WXE1 791 aa20.28■□□□□ 0.84
SMPD4-202ENST00000409031 BMP2KQ9NSY1 1161 aaPredicted RBP20.28■□□□□ 0.84
SMPD4-202ENST00000409031 SPAG1Q07617 926 aa20.28■□□□□ 0.84
SMPD4-202ENST00000409031 TUBB2AQ13885 445 aa20.28■□□□□ 0.84
SMPD4-202ENST00000409031 ABTB2Q8N961 1025 aa20.28■□□□□ 0.84
SMPD4-202ENST00000409031 TUBB2BQ9BVA1 445 aa20.28■□□□□ 0.84
SMPD4-202ENST00000409031 UTP14AQ9BVJ6 771 aaKnown RBP20.28■□□□□ 0.84
SMPD4-202ENST00000409031 MKRN1Q9UHC7 482 aaKnown RBP20.28■□□□□ 0.84
SMPD4-202ENST00000409031 RTL1A6NKG5 1358 aa20.28■□□□□ 0.84
SMPD4-202ENST00000409031 CACNA2D4Q7Z3S7 1137 aa20.28■□□□□ 0.84
SMPD4-202ENST00000409031 CLSTN2Q9H4D0 955 aa20.28■□□□□ 0.84
SMPD4-202ENST00000409031 CUL7Q14999 1698 aa20.28■□□□□ 0.84
SMPD4-202ENST00000409031 THOC2Q8NI27 1593 aaKnown RBP20.27■□□□□ 0.84
SMPD4-202ENST00000409031 FAM76AQ8TAV0 307 aa20.27■□□□□ 0.84
SMPD4-202ENST00000409031 UHRF1BP1Q6BDS2 1440 aa20.27■□□□□ 0.84
SMPD4-202ENST00000409031 CARD6Q9BX69 1037 aa20.27■□□□□ 0.84
SMPD4-202ENST00000409031 BTBD11A6QL63 1104 aa20.27■□□□□ 0.84
SMPD4-202ENST00000409031 GCOM1H8Y6P7 765 aaPredicted RBP20.27■□□□□ 0.84
SMPD4-202ENST00000409031 MYZAPP0CAP1 466 aa20.27■□□□□ 0.84
SMPD4-202ENST00000409031 CEP57Q86XR8 500 aa20.26■□□□□ 0.83
SMPD4-202ENST00000409031 CCDC113Q9H0I3 377 aa20.26■□□□□ 0.83
SMPD4-202ENST00000409031 CYLC1P35663 651 aaPredicted RBP20.26■□□□□ 0.83
SMPD4-202ENST00000409031 ANKRD18AQ8IVF6 992 aa20.26■□□□□ 0.83
SMPD4-202ENST00000409031 GPT2Q8TD30 523 aa20.26■□□□□ 0.83
SMPD4-202ENST00000409031 TCEANC2Q96MN5 208 aa20.26■□□□□ 0.83
SMPD4-202ENST00000409031 MPHOSPH8Q99549 860 aa20.26■□□□□ 0.83
SMPD4-202ENST00000409031 PUF60Q9UHX1 559 aaKnown RBP20.26■□□□□ 0.83
SMPD4-202ENST00000409031 MAGI1Q96QZ7 1491 aaPredicted RBP20.26■□□□□ 0.83
SMPD4-202ENST00000409031 COL17A1Q9UMD9 1497 aaPredicted RBP20.26■□□□□ 0.83
SMPD4-202ENST00000409031 LARP1Q6PKG0 1096 aaKnown RBP20.26■□□□□ 0.83
SMPD4-202ENST00000409031 TXNDC2Q86VQ3 553 aa20.26■□□□□ 0.83
SMPD4-202ENST00000409031 CCDC43Q96MW1 224 aaKnown RBP20.26■□□□□ 0.83
SMPD4-202ENST00000409031 CNNM1Q9NRU3 951 aa20.26■□□□□ 0.83
SMPD4-202ENST00000409031 TCOF1Q13428 1488 aaKnown RBP20.26■□□□□ 0.83
SMPD4-202ENST00000409031 OAS2P29728 719 aaKnown RBP20.26■□□□□ 0.83
SMPD4-202ENST00000409031 CCDC121Q6ZUS5 278 aa20.26■□□□□ 0.83
SMPD4-202ENST00000409031 POTEDQ86YR6 584 aa20.26■□□□□ 0.83
SMPD4-202ENST00000409031 C8orf58Q8NAV2 365 aa20.26■□□□□ 0.83
SMPD4-202ENST00000409031 PYM1Q9BRP8 204 aaKnown RBP20.26■□□□□ 0.83
SMPD4-202ENST00000409031 BIVM-ERCC5R4GMW8 1640 aa20.26■□□□□ 0.83
SMPD4-202ENST00000409031 KIAA0586Q9BVV6 1533 aa20.25■□□□□ 0.83
SMPD4-202ENST00000409031 FAM135AQ9P2D6 1515 aa20.25■□□□□ 0.83
SMPD4-202ENST00000409031 FGFR1OPO95684 399 aaKnown RBP20.25■□□□□ 0.83
SMPD4-202ENST00000409031 ARFGAP2Q8N6H7 521 aa20.25■□□□□ 0.83
SMPD4-202ENST00000409031 NLRP2Q9NX02 1062 aa20.25■□□□□ 0.83
SMPD4-202ENST00000409031 SLTMQ9NWH9 1034 aaKnown RBP eCLIP20.25■□□□□ 0.832e-6■□□□□ 11
SMPD4-202ENST00000409031 TCEAL9Q9UHQ7 104 aa20.25■□□□□ 0.83
SMPD4-202ENST00000409031 ARHGEF11O15085 1522 aa20.25■□□□□ 0.83
SMPD4-202ENST00000409031 A6NNZ2 444 aa20.25■□□□□ 0.83
SMPD4-202ENST00000409031 TUBB8Q3ZCM7 444 aa20.25■□□□□ 0.83
SMPD4-202ENST00000409031 DRC1Q96MC2 740 aa20.25■□□□□ 0.83
SMPD4-202ENST00000409031 A0A1B0GUA9 196 aa20.25■□□□□ 0.83
SMPD4-202ENST00000409031 ZNF213O14771 459 aa20.25■□□□□ 0.83
SMPD4-202ENST00000409031 SPTLC2O15270 562 aa20.25■□□□□ 0.83
SMPD4-202ENST00000409031 B4GALNT4Q76KP1 1039 aa20.25■□□□□ 0.83
SMPD4-202ENST00000409031 ZNF215Q9UL58 517 aaPredicted RBP20.25■□□□□ 0.83
SMPD4-202ENST00000409031 RAD21O60216 631 aa20.24■□□□□ 0.83
SMPD4-202ENST00000409031 RHOXF2BP0C7M4 288 aa20.24■□□□□ 0.83
SMPD4-202ENST00000409031 FAM160A1Q05DH4 1040 aa20.24■□□□□ 0.83
SMPD4-202ENST00000409031 AFAP1L1Q8TED9 768 aa20.24■□□□□ 0.83
SMPD4-202ENST00000409031 RHOXF2Q9BQY4 288 aa20.24■□□□□ 0.83
SMPD4-202ENST00000409031 IQGAP2Q13576 1575 aa20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 107.8 ms