RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 RPS6KA4O75676 772 aa4.6□□□□□ -1.67
RTN4-208ENST00000404909 TXNRD1Q16881 649 aa4.6□□□□□ -1.67
RTN4-208ENST00000404909 RC3H1Q5TC82 1133 aaKnown RBP4.6□□□□□ -1.67
RTN4-208ENST00000404909 IL1RAPL2Q9NP60 686 aa4.6□□□□□ -1.67
RTN4-208ENST00000404909 SRP68Q9UHB9 627 aaKnown RBP4.6□□□□□ -1.67
RTN4-208ENST00000404909 ZNF652Q9Y2D9 606 aa4.6□□□□□ -1.67
RTN4-208ENST00000404909 ARFGEF2Q9Y6D5 1785 aa4.59□□□□□ -1.67
RTN4-208ENST00000404909 RFC4P35249 363 aa4.59□□□□□ -1.67
RTN4-208ENST00000404909 CASP7P55210 303 aa4.59□□□□□ -1.67
RTN4-208ENST00000404909 TRIM28Q13263 835 aaKnown RBP4.59□□□□□ -1.67
RTN4-208ENST00000404909 POLA2Q14181 598 aa4.59□□□□□ -1.67
RTN4-208ENST00000404909 TRAPPC3LQ5T215 181 aa4.59□□□□□ -1.67
RTN4-208ENST00000404909 USPL1Q5W0Q7 1092 aa4.59□□□□□ -1.67
RTN4-208ENST00000404909 ZBTB38Q8NAP3 1195 aaPredicted RBP4.59□□□□□ -1.67
RTN4-208ENST00000404909 ARHGEF1Q92888 912 aaKnown RBP4.59□□□□□ -1.67
RTN4-208ENST00000404909 LRRCC1Q9C099 1032 aa4.59□□□□□ -1.67
RTN4-208ENST00000404909 TSHZ2Q9NRE2 1034 aa4.59□□□□□ -1.67
RTN4-208ENST00000404909 UBN2Q6ZU65 1347 aa4.59□□□□□ -1.67
RTN4-208ENST00000404909 SLC27A3Q5K4L6 730 aa4.59□□□□□ -1.67
RTN4-208ENST00000404909 PROM2Q8N271 834 aa4.59□□□□□ -1.67
RTN4-208ENST00000404909 OTUD7AQ8TE49 926 aaPredicted RBP4.59□□□□□ -1.67
RTN4-208ENST00000404909 SBF2Q86WG5 1849 aa4.59□□□□□ -1.67
RTN4-208ENST00000404909 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP4.59□□□□□ -1.68
RTN4-208ENST00000404909 IRS4O14654 1257 aaPredicted RBP4.59□□□□□ -1.68
RTN4-208ENST00000404909 PCCAP05165 728 aaPredicted RBP4.59□□□□□ -1.68
RTN4-208ENST00000404909 G3BP1Q13283 466 aaKnown RBP eCLIP4.59□□□□□ -1.683e-16■□□□□ 9.4
RTN4-208ENST00000404909 MTX1Q13505 466 aa4.59□□□□□ -1.68
RTN4-208ENST00000404909 SUSD4Q5VX71 490 aa4.59□□□□□ -1.68
RTN4-208ENST00000404909 NUTM1Q86Y26 1132 aa4.59□□□□□ -1.68
RTN4-208ENST00000404909 ZNF34Q8IZ26 560 aa4.59□□□□□ -1.68
RTN4-208ENST00000404909 NPHP1O15259 732 aa4.58□□□□□ -1.68
RTN4-208ENST00000404909 MSH5O43196 834 aa4.58□□□□□ -1.68
RTN4-208ENST00000404909 HCLS1P14317 486 aaPredicted RBP4.58□□□□□ -1.68
RTN4-208ENST00000404909 GTF2E1P29083 439 aaPredicted RBP4.58□□□□□ -1.68
RTN4-208ENST00000404909 FOXO4P98177 505 aa4.58□□□□□ -1.68
RTN4-208ENST00000404909 ILDR1Q86SU0 546 aaPredicted RBP4.58□□□□□ -1.68
RTN4-208ENST00000404909 POTEDQ86YR6 584 aa4.58□□□□□ -1.68
RTN4-208ENST00000404909 UTP14AQ9BVJ6 771 aaKnown RBP4.58□□□□□ -1.68
RTN4-208ENST00000404909 TFCP2L1Q9NZI6 479 aa4.58□□□□□ -1.68
RTN4-208ENST00000404909 IBTKQ9P2D0 1353 aaPredicted RBP4.58□□□□□ -1.68
RTN4-208ENST00000404909 GOLGB1Q14789 3259 aaKnown RBP4.58□□□□□ -1.68
RTN4-208ENST00000404909 HSP90AB4PQ58FF6 505 aa4.58□□□□□ -1.68
RTN4-208ENST00000404909 TSHZ3Q63HK5 1081 aa4.58□□□□□ -1.68
RTN4-208ENST00000404909 TBC1D9BQ66K14 1250 aa4.58□□□□□ -1.68
RTN4-208ENST00000404909 RHPN1Q8TCX5 695 aa4.58□□□□□ -1.68
RTN4-208ENST00000404909 NARFQ9UHQ1 456 aa4.58□□□□□ -1.68
RTN4-208ENST00000404909 N4BP2Q86UW6 1770 aaPredicted RBP4.58□□□□□ -1.68
RTN4-208ENST00000404909 AFDNP55196 1824 aaKnown RBP4.58□□□□□ -1.68
RTN4-208ENST00000404909 RAB11FIP3O75154 756 aa4.58□□□□□ -1.68
RTN4-208ENST00000404909 EN1Q05925 392 aaPredicted RBP4.58□□□□□ -1.68
RTN4-208ENST00000404909 CCDC57Q2TAC2 916 aa4.58□□□□□ -1.68
RTN4-208ENST00000404909 RABL6Q3YEC7 729 aaPredicted RBP4.58□□□□□ -1.68
RTN4-208ENST00000404909 PARP10Q53GL7 1025 aa4.58□□□□□ -1.68
RTN4-208ENST00000404909 TAF7LQ5H9L4 462 aa4.58□□□□□ -1.68
RTN4-208ENST00000404909 CLEC4GQ6UXB4 293 aa4.58□□□□□ -1.68
RTN4-208ENST00000404909 KIF1BPQ96EK5 621 aa4.58□□□□□ -1.68
RTN4-208ENST00000404909 ZNF594Q96JF6 807 aaPredicted RBP4.58□□□□□ -1.68
RTN4-208ENST00000404909 SETDB2Q96T68 719 aa4.58□□□□□ -1.68
RTN4-208ENST00000404909 SH3TC1Q8TE82 1336 aa4.58□□□□□ -1.68
RTN4-208ENST00000404909 NUP188Q5SRE5 1749 aa4.58□□□□□ -1.68
RTN4-208ENST00000404909 PLSCR1O15162 318 aa4.57□□□□□ -1.68
RTN4-208ENST00000404909 FAM161AQ3B820 660 aa4.57□□□□□ -1.68
RTN4-208ENST00000404909 PLEKHM2Q8IWE5 1019 aa4.57□□□□□ -1.68
RTN4-208ENST00000404909 CCDC24Q8N4L8 307 aa4.57□□□□□ -1.68
RTN4-208ENST00000404909 PTPN12Q05209 780 aaKnown RBP4.57□□□□□ -1.68
RTN4-208ENST00000404909 IFIT5Q13325 482 aaKnown RBP4.57□□□□□ -1.68
RTN4-208ENST00000404909 SF3B2Q13435 895 aaKnown RBP4.57□□□□□ -1.68
RTN4-208ENST00000404909 NBPF5PQ86XG9 351 aaPredicted RBP4.57□□□□□ -1.68
RTN4-208ENST00000404909 BCL2L12Q9HB09 334 aa4.57□□□□□ -1.68
RTN4-208ENST00000404909 NOP58Q9Y2X3 529 aaKnown RBP4.57□□□□□ -1.68
RTN4-208ENST00000404909 USP42Q9H9J4 1324 aaKnown RBP4.57□□□□□ -1.68
RTN4-208ENST00000404909 RFX5P48382 616 aaPredicted RBP4.57□□□□□ -1.68
RTN4-208ENST00000404909 CTSWP56202 376 aa4.57□□□□□ -1.68
RTN4-208ENST00000404909 ERC1Q8IUD2 1116 aa4.57□□□□□ -1.68
RTN4-208ENST00000404909 CLASRPQ8N2M8 674 aaKnown RBP4.57□□□□□ -1.68
RTN4-208ENST00000404909 GREM2Q9H772 168 aa4.57□□□□□ -1.68
RTN4-208ENST00000404909 COL5A3P25940 1745 aaPredicted RBP4.57□□□□□ -1.68
RTN4-208ENST00000404909 PDE8AO60658 829 aa4.57□□□□□ -1.68
RTN4-208ENST00000404909 NTSR2O95665 410 aa4.57□□□□□ -1.68
RTN4-208ENST00000404909 MX1P20591 662 aa4.57□□□□□ -1.68
RTN4-208ENST00000404909 ITGA6P23229 1130 aa4.57□□□□□ -1.68
RTN4-208ENST00000404909 EZH2Q15910 746 aaKnown RBP4.57□□□□□ -1.68
RTN4-208ENST00000404909 ZNF827Q17R98 1081 aa4.57□□□□□ -1.68
RTN4-208ENST00000404909 ERFEQ4G0M1 354 aa4.57□□□□□ -1.68
RTN4-208ENST00000404909 AACSQ86V21 672 aa4.57□□□□□ -1.68
RTN4-208ENST00000404909 TTLL11Q8NHH1 800 aa4.57□□□□□ -1.68
RTN4-208ENST00000404909 BACH2Q9BYV9 841 aa4.57□□□□□ -1.68
RTN4-208ENST00000404909 COPRSQ9NQ92 184 aa4.57□□□□□ -1.68
RTN4-208ENST00000404909 NUP98P52948 1817 aa4.56□□□□□ -1.68
RTN4-208ENST00000404909 CDHR2Q9BYE9 1310 aa4.56□□□□□ -1.68
RTN4-208ENST00000404909 LY75O60449 1722 aa4.56□□□□□ -1.68
RTN4-208ENST00000404909 C4BP0C0L5 1744 aa4.56□□□□□ -1.68
RTN4-208ENST00000404909 SASH1O94885 1247 aa4.56□□□□□ -1.68
RTN4-208ENST00000404909 IFIT2P09913 472 aaKnown RBP4.56□□□□□ -1.68
RTN4-208ENST00000404909 ADRA2BP18089 450 aa4.56□□□□□ -1.68
RTN4-208ENST00000404909 SSFA2P28290 1259 aa4.56□□□□□ -1.68
RTN4-208ENST00000404909 PDE1AP54750 535 aa4.56□□□□□ -1.68
RTN4-208ENST00000404909 C8orf34Q49A92 452 aa4.56□□□□□ -1.68
RTN4-208ENST00000404909 DEFB132Q7Z7B7 95 aa4.56□□□□□ -1.68
RTN4-208ENST00000404909 PLA2G12BQ9BX93 195 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms