RNA–Protein interactions for RNA: ENST00000397204.8

CAPN3-208, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 1,237 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-208ENST00000397204 SBF1O95248 1867 aa11.72□□□□□ -0.53
CAPN3-208ENST00000397204 CEMIPQ8WUJ3 1361 aa11.72□□□□□ -0.53
CAPN3-208ENST00000397204 LTBP3Q9NS15 1303 aa11.72□□□□□ -0.53
CAPN3-208ENST00000397204 NPHP1O15259 732 aa11.72□□□□□ -0.53
CAPN3-208ENST00000397204 SRGNP10124 158 aa11.72□□□□□ -0.53
CAPN3-208ENST00000397204 ST5P78524 1137 aa11.72□□□□□ -0.53
CAPN3-208ENST00000397204 CCDC24Q8N4L8 307 aa11.72□□□□□ -0.53
CAPN3-208ENST00000397204 CNBD1Q8NA66 436 aa11.72□□□□□ -0.53
CAPN3-208ENST00000397204 PHACTR3Q96KR7 559 aa11.72□□□□□ -0.53
CAPN3-208ENST00000397204 CFAP53Q96M91 514 aa11.72□□□□□ -0.53
CAPN3-208ENST00000397204 NUDCQ9Y266 331 aa11.72□□□□□ -0.53
CAPN3-208ENST00000397204 BOLA1Q9Y3E2 137 aa11.72□□□□□ -0.53
CAPN3-208ENST00000397204 NRXN2Q9P2S2 1712 aa11.72□□□□□ -0.53
CAPN3-208ENST00000397204 SNRPA1P09661 255 aaKnown RBP11.71□□□□□ -0.53
CAPN3-208ENST00000397204 PRKAR2BP31323 418 aa11.71□□□□□ -0.53
CAPN3-208ENST00000397204 DZIP3Q86Y13 1208 aaKnown RBP11.71□□□□□ -0.53
CAPN3-208ENST00000397204 MASTLQ96GX5 879 aa11.71□□□□□ -0.53
CAPN3-208ENST00000397204 TAOK3Q9H2K8 898 aa11.71□□□□□ -0.53
CAPN3-208ENST00000397204 USP16Q9Y5T5 823 aa11.71□□□□□ -0.53
CAPN3-208ENST00000397204 AFDNP55196 1824 aaKnown RBP11.7□□□□□ -0.54
CAPN3-208ENST00000397204 WDR90Q96KV7 1748 aa11.7□□□□□ -0.54
CAPN3-208ENST00000397204 KLRG2A4D1S0 409 aaPredicted RBP11.7□□□□□ -0.54
CAPN3-208ENST00000397204 G3V3G9 751 aa11.7□□□□□ -0.54
CAPN3-208ENST00000397204 KCNQ3O43525 872 aa11.7□□□□□ -0.54
CAPN3-208ENST00000397204 HTATSF1O43719 755 aaKnown RBP11.7□□□□□ -0.54
CAPN3-208ENST00000397204 CNGB1Q14028 1251 aaPredicted RBP11.7□□□□□ -0.54
CAPN3-208ENST00000397204 RTF1Q92541 710 aaKnown RBP11.7□□□□□ -0.54
CAPN3-208ENST00000397204 RSPH6AQ9H0K4 717 aa11.7□□□□□ -0.54
CAPN3-208ENST00000397204 ZNF652Q9Y2D9 606 aa11.7□□□□□ -0.54
CAPN3-208ENST00000397204 PRPF40BQ6NWY9 871 aaKnown RBP11.69□□□□□ -0.54
CAPN3-208ENST00000397204 TPTE2Q6XPS3 522 aa11.69□□□□□ -0.54
CAPN3-208ENST00000397204 C3orf67Q6ZVT6 689 aa11.69□□□□□ -0.54
CAPN3-208ENST00000397204 NBPF5PQ86XG9 351 aaPredicted RBP11.69□□□□□ -0.54
CAPN3-208ENST00000397204 TNS4Q8IZW8 715 aa11.69□□□□□ -0.54
CAPN3-208ENST00000397204 C7orf43Q8WVR3 580 aa11.69□□□□□ -0.54
CAPN3-208ENST00000397204 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.69□□□□□ -0.54
CAPN3-208ENST00000397204 TNRC6CQ9HCJ0 1690 aaKnown RBP11.68□□□□□ -0.54
CAPN3-208ENST00000397204 DDNO94850 711 aaPredicted RBP11.68□□□□□ -0.54
CAPN3-208ENST00000397204 NPR1P16066 1061 aa11.68□□□□□ -0.54
CAPN3-208ENST00000397204 SLAIN1Q8ND83 568 aa11.68□□□□□ -0.54
CAPN3-208ENST00000397204 COL3A1P02461 1466 aaPredicted RBP11.68□□□□□ -0.54
CAPN3-208ENST00000397204 IQCA1LA6NCM1 817 aa11.67□□□□□ -0.54
CAPN3-208ENST00000397204 U2AF1L5P0DN76 240 aaPredicted RBP11.67□□□□□ -0.54
CAPN3-208ENST00000397204 U2AF1Q01081 240 aaKnown RBP eCLIP11.67□□□□□ -0.54
CAPN3-208ENST00000397204 UBR2Q8IWV8 1755 aa11.67□□□□□ -0.54
CAPN3-208ENST00000397204 HSPA1AP0DMV8 641 aaKnown RBP11.66□□□□□ -0.54
CAPN3-208ENST00000397204 HSPA1BP0DMV9 641 aaKnown RBP11.66□□□□□ -0.54
CAPN3-208ENST00000397204 ALDH1B1P30837 517 aa11.66□□□□□ -0.54
CAPN3-208ENST00000397204 TAF7Q15545 349 aaPredicted RBP11.66□□□□□ -0.54
CAPN3-208ENST00000397204 CCDC93Q567U6 631 aa11.66□□□□□ -0.54
CAPN3-208ENST00000397204 RTKN2Q8IZC4 609 aa11.66□□□□□ -0.54
CAPN3-208ENST00000397204 PRAMEF22A3QJZ6 481 aa11.65□□□□□ -0.54
CAPN3-208ENST00000397204 NBPF26B4DH59 902 aa11.65□□□□□ -0.54
CAPN3-208ENST00000397204 PIP4K2AP48426 406 aaPredicted RBP11.65□□□□□ -0.54
CAPN3-208ENST00000397204 FKBP4Q02790 459 aaKnown RBP eCLIP11.65□□□□□ -0.54
CAPN3-208ENST00000397204 NBPF10Q6P3W6 841 aaKnown RBP11.65□□□□□ -0.54
CAPN3-208ENST00000397204 MCM10Q7L590 875 aa11.65□□□□□ -0.54
CAPN3-208ENST00000397204 NBPF15Q8N660 670 aa11.65□□□□□ -0.54
CAPN3-208ENST00000397204 NIP7Q9Y221 180 aaKnown RBP eCLIP11.65□□□□□ -0.54
CAPN3-208ENST00000397204 DLEC1Q9Y238 1755 aa11.64□□□□□ -0.55
CAPN3-208ENST00000397204 PPP2R1AP30153 589 aa11.64□□□□□ -0.55
CAPN3-208ENST00000397204 LDHDQ86WU2 507 aa11.64□□□□□ -0.55
CAPN3-208ENST00000397204 TMEM121BQ9BXQ6 578 aaPredicted RBP11.64□□□□□ -0.55
CAPN3-208ENST00000397204 TAF1DQ9H5J8 278 aaPredicted RBP11.64□□□□□ -0.55
CAPN3-208ENST00000397204 GTF2E1P29083 439 aaPredicted RBP11.63□□□□□ -0.55
CAPN3-208ENST00000397204 MICALL2Q8IY33 904 aa11.63□□□□□ -0.55
CAPN3-208ENST00000397204 PNISRQ8TF01 805 aaKnown RBP11.63□□□□□ -0.55
CAPN3-208ENST00000397204 ERVV-1B6SEH8 477 aa11.62□□□□□ -0.55
CAPN3-208ENST00000397204 ITGBL1O95965 494 aaPredicted RBP11.62□□□□□ -0.55
CAPN3-208ENST00000397204 DCTN1Q14203 1278 aa11.62□□□□□ -0.55
CAPN3-208ENST00000397204 PNMA8AQ86V59 439 aaPredicted RBP11.62□□□□□ -0.55
CAPN3-208ENST00000397204 SYNE4Q8N205 404 aa11.62□□□□□ -0.55
CAPN3-208ENST00000397204 ZNF277Q9NRM2 450 aaPredicted RBP11.62□□□□□ -0.55
CAPN3-208ENST00000397204 MKRN1Q9UHC7 482 aaKnown RBP11.62□□□□□ -0.55
CAPN3-208ENST00000397204 HACL1Q9UJ83 578 aa11.62□□□□□ -0.55
CAPN3-208ENST00000397204 PASKQ96RG2 1323 aa11.61□□□□□ -0.55
CAPN3-208ENST00000397204 CCDC88AQ3V6T2 1871 aa11.61□□□□□ -0.55
CAPN3-208ENST00000397204 VIRMAQ69YN4 1812 aaKnown RBP11.61□□□□□ -0.55
CAPN3-208ENST00000397204 FAM177BA6PVY3 158 aa11.61□□□□□ -0.55
CAPN3-208ENST00000397204 FZD9O00144 591 aa11.61□□□□□ -0.55
CAPN3-208ENST00000397204 NEFMP07197 916 aa11.61□□□□□ -0.55
CAPN3-208ENST00000397204 HLFQ16534 295 aa11.61□□□□□ -0.55
CAPN3-208ENST00000397204 GRIPAP1Q4V328 841 aa11.61□□□□□ -0.55
CAPN3-208ENST00000397204 CC2D2BQ6DHV5 1058 aa11.61□□□□□ -0.55
CAPN3-208ENST00000397204 NYXQ9GZU5 481 aa11.61□□□□□ -0.55
CAPN3-208ENST00000397204 MIS18AQ9NYP9 233 aa11.61□□□□□ -0.55
CAPN3-208ENST00000397204 FER1L6Q2WGJ9 1857 aa11.61□□□□□ -0.55
CAPN3-208ENST00000397204 ANKRD31Q8N7Z5 1873 aa11.61□□□□□ -0.55
CAPN3-208ENST00000397204 SLX4Q8IY92 1834 aa11.6□□□□□ -0.55
CAPN3-208ENST00000397204 TMEM88BA6NKF7 163 aa11.6□□□□□ -0.55
CAPN3-208ENST00000397204 IARSP41252 1262 aaKnown RBP11.6□□□□□ -0.55
CAPN3-208ENST00000397204 GPC2Q8N158 579 aa11.6□□□□□ -0.55
CAPN3-208ENST00000397204 JDP2Q8WYK2 163 aa11.6□□□□□ -0.55
CAPN3-208ENST00000397204 PSMD1Q99460 953 aa11.6□□□□□ -0.55
CAPN3-208ENST00000397204 SIPA1L3O60292 1781 aaPredicted RBP11.59□□□□□ -0.55
CAPN3-208ENST00000397204 SCN7AQ01118 1682 aa11.59□□□□□ -0.55
CAPN3-208ENST00000397204 CNTNAP1P78357 1384 aa11.59□□□□□ -0.55
CAPN3-208ENST00000397204 PPP1R37O75864 691 aa11.59□□□□□ -0.55
CAPN3-208ENST00000397204 HOXA10P31260 410 aaPredicted RBP11.59□□□□□ -0.55
CAPN3-208ENST00000397204 EPHX2P34913 555 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms