RNA–Protein interactions for RNA: ENST00000396215.7

LDHC-202, Transcript of lactate dehydrogenase C, humanhuman

TSL 1 (best)

Gene LDHC, Length 1,092 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDHC-202ENST00000396215 TRAF5O00463 557 aa13.17□□□□□ -0.3
LDHC-202ENST00000396215 EPS15P42566 896 aa13.17□□□□□ -0.3
LDHC-202ENST00000396215 EIF6P56537 245 aaKnown RBP13.17□□□□□ -0.3
LDHC-202ENST00000396215 CC2D2BQ6DHV5 1058 aa13.17□□□□□ -0.3
LDHC-202ENST00000396215 ZNF790Q6PG37 636 aa13.17□□□□□ -0.3
LDHC-202ENST00000396215 OLFM4Q6UX06 510 aa13.17□□□□□ -0.3
LDHC-202ENST00000396215 NBPF5PQ86XG9 351 aaPredicted RBP13.17□□□□□ -0.3
LDHC-202ENST00000396215 COL4A5P29400 1685 aa13.16□□□□□ -0.3
LDHC-202ENST00000396215 GRM1Q13255 1194 aa13.16□□□□□ -0.3
LDHC-202ENST00000396215 MTHFSDQ2M296 383 aaKnown RBP13.16□□□□□ -0.3
LDHC-202ENST00000396215 PGAP2Q9UHJ9 254 aa13.16□□□□□ -0.3
LDHC-202ENST00000396215 A1BGP04217 495 aa13.15□□□□□ -0.3
LDHC-202ENST00000396215 GRIPAP1Q4V328 841 aa13.15□□□□□ -0.3
LDHC-202ENST00000396215 TPTE2Q6XPS3 522 aa13.15□□□□□ -0.3
LDHC-202ENST00000396215 DZIP3Q86Y13 1208 aaKnown RBP13.15□□□□□ -0.3
LDHC-202ENST00000396215 GJA3Q9Y6H8 435 aa13.15□□□□□ -0.3
LDHC-202ENST00000396215 CIAPIN1Q6FI81 312 aa13.14□□□□□ -0.31
LDHC-202ENST00000396215 NPM2Q86SE8 214 aaKnown RBP13.14□□□□□ -0.31
LDHC-202ENST00000396215 MORC1Q86VD1 984 aa13.14□□□□□ -0.31
LDHC-202ENST00000396215 ADARB2Q9NS39 739 aaKnown RBP13.14□□□□□ -0.31
LDHC-202ENST00000396215 ZNF330Q9Y3S2 320 aaPredicted RBP13.14□□□□□ -0.31
LDHC-202ENST00000396215 SIPA1L3O60292 1781 aaPredicted RBP13.14□□□□□ -0.31
LDHC-202ENST00000396215 CELF2O95319 508 aaKnown RBP13.13□□□□□ -0.31
LDHC-202ENST00000396215 NOGQ13253 232 aa13.13□□□□□ -0.31
LDHC-202ENST00000396215 CRY2Q49AN0 593 aa13.13□□□□□ -0.31
LDHC-202ENST00000396215 FMNL2Q96PY5 1086 aa13.13□□□□□ -0.31
LDHC-202ENST00000396215 SAGE1Q9NXZ1 904 aa13.13□□□□□ -0.31
LDHC-202ENST00000396215 ZNF652Q9Y2D9 606 aa13.13□□□□□ -0.31
LDHC-202ENST00000396215 ZC3H15Q8WU90 426 aaKnown RBP13.12□□□□□ -0.31
LDHC-202ENST00000396215 PANK3Q9H999 370 aa13.12□□□□□ -0.31
LDHC-202ENST00000396215 GPRC5DQ9NZD1 345 aa13.12□□□□□ -0.31
LDHC-202ENST00000396215 SOX10P56693 466 aa13.11□□□□□ -0.31
LDHC-202ENST00000396215 PIP4P2Q8N4L2 257 aa13.11□□□□□ -0.31
LDHC-202ENST00000396215 IL17REQ8NFR9 667 aa13.11□□□□□ -0.31
LDHC-202ENST00000396215 VPS33BQ9H267 617 aa13.11□□□□□ -0.31
LDHC-202ENST00000396215 HMOX1P09601 288 aa13.1□□□□□ -0.31
LDHC-202ENST00000396215 HOXA10P31260 410 aaPredicted RBP13.1□□□□□ -0.31
LDHC-202ENST00000396215 TEFQ10587 303 aa13.1□□□□□ -0.31
LDHC-202ENST00000396215 LARGE2Q8N3Y3 721 aa13.1□□□□□ -0.31
LDHC-202ENST00000396215 SPDYE1Q8NFV5 336 aaPredicted RBP13.1□□□□□ -0.31
LDHC-202ENST00000396215 ZIC5Q96T25 663 aa13.1□□□□□ -0.31
LDHC-202ENST00000396215 GLIS2Q9BZE0 524 aaPredicted RBP13.09□□□□□ -0.31
LDHC-202ENST00000396215 NIP7Q9Y221 180 aaKnown RBP eCLIP13.09□□□□□ -0.31
LDHC-202ENST00000396215 USP16Q9Y5T5 823 aa13.09□□□□□ -0.31
LDHC-202ENST00000396215 KIF7Q2M1P5 1343 aa13.09□□□□□ -0.31
LDHC-202ENST00000396215 CDHR2Q9BYE9 1310 aa13.09□□□□□ -0.31
LDHC-202ENST00000396215 MKI67P46013 3256 aaKnown RBP13.08□□□□□ -0.31
LDHC-202ENST00000396215 CEMIPQ8WUJ3 1361 aa13.08□□□□□ -0.31
LDHC-202ENST00000396215 RIC1Q4ADV7 1423 aa13.08□□□□□ -0.32
LDHC-202ENST00000396215 GNAT3A8MTJ3 354 aa13.08□□□□□ -0.32
LDHC-202ENST00000396215 CDC37L1Q7L3B6 337 aa13.08□□□□□ -0.32
LDHC-202ENST00000396215 GCC1Q96CN9 775 aa13.08□□□□□ -0.32
LDHC-202ENST00000396215 FAM155AB1AL88 458 aaPredicted RBP13.07□□□□□ -0.32
LDHC-202ENST00000396215 FXR2P51116 673 aaKnown RBP eCLIP13.07□□□□□ -0.32
LDHC-202ENST00000396215 NIM1KQ8IY84 436 aa13.07□□□□□ -0.32
LDHC-202ENST00000396215 NPC1L1Q9UHC9 1359 aa13.07□□□□□ -0.32
LDHC-202ENST00000396215 HIRAP54198 1017 aaPredicted RBP13.06□□□□□ -0.32
LDHC-202ENST00000396215 GAS2L2Q8NHY3 880 aa13.06□□□□□ -0.32
LDHC-202ENST00000396215 CRAMP1Q96RY5 1269 aa13.06□□□□□ -0.32
LDHC-202ENST00000396215 KCNQ3O43525 872 aa13.05□□□□□ -0.32
LDHC-202ENST00000396215 HUNKP57058 714 aa13.05□□□□□ -0.32
LDHC-202ENST00000396215 CXCL9Q07325 125 aa13.05□□□□□ -0.32
LDHC-202ENST00000396215 CTU1Q7Z7A3 348 aaKnown RBP13.05□□□□□ -0.32
LDHC-202ENST00000396215 CCDC102AQ96A19 550 aa13.05□□□□□ -0.32
LDHC-202ENST00000396215 NYXQ9GZU5 481 aa13.05□□□□□ -0.32
LDHC-202ENST00000396215 RNF186Q9NXI6 227 aa13.05□□□□□ -0.32
LDHC-202ENST00000396215 ZNRF3Q9ULT6 936 aa13.05□□□□□ -0.32
LDHC-202ENST00000396215 AKAP11Q9UKA4 1901 aa13.04□□□□□ -0.32
LDHC-202ENST00000396215 BTBD11A6QL63 1104 aa13.04□□□□□ -0.32
LDHC-202ENST00000396215 NBPF26B4DH59 902 aa13.04□□□□□ -0.32
LDHC-202ENST00000396215 PIP4K2AP48426 406 aaPredicted RBP13.04□□□□□ -0.32
LDHC-202ENST00000396215 GMPSP49915 693 aaPredicted RBP13.04□□□□□ -0.32
LDHC-202ENST00000396215 HLFQ16534 295 aa13.04□□□□□ -0.32
LDHC-202ENST00000396215 RGMBQ6NW40 437 aa13.04□□□□□ -0.32
LDHC-202ENST00000396215 NBPF10Q6P3W6 841 aaKnown RBP13.04□□□□□ -0.32
LDHC-202ENST00000396215 NBPF15Q8N660 670 aa13.04□□□□□ -0.32
LDHC-202ENST00000396215 POLR3GLQ9BT43 218 aa13.04□□□□□ -0.32
LDHC-202ENST00000396215 RTFDC1Q9BY42 306 aaPredicted RBP13.04□□□□□ -0.32
LDHC-202ENST00000396215 ABCC12Q96J65 1359 aa13.04□□□□□ -0.32
LDHC-202ENST00000396215 IBTKQ9P2D0 1353 aaPredicted RBP13.04□□□□□ -0.32
LDHC-202ENST00000396215 PPIP5K2O43314 1243 aa13.03□□□□□ -0.32
LDHC-202ENST00000396215 DIAPH1O60610 1272 aaKnown RBP13.03□□□□□ -0.32
LDHC-202ENST00000396215 SNRPA1P09661 255 aaKnown RBP13.03□□□□□ -0.32
LDHC-202ENST00000396215 GTF2E1P29083 439 aaPredicted RBP13.03□□□□□ -0.32
LDHC-202ENST00000396215 PKN2Q16513 984 aaKnown RBP13.03□□□□□ -0.32
LDHC-202ENST00000396215 AMER1Q5JTC6 1135 aaPredicted RBP13.03□□□□□ -0.32
LDHC-202ENST00000396215 PRAMEF22A3QJZ6 481 aa13.02□□□□□ -0.33
LDHC-202ENST00000396215 FAM177BA6PVY3 158 aa13.02□□□□□ -0.33
LDHC-202ENST00000396215 PPEF1O14829 653 aaPredicted RBP13.02□□□□□ -0.33
LDHC-202ENST00000396215 KIF23Q02241 960 aaPredicted RBP13.02□□□□□ -0.33
LDHC-202ENST00000396215 RPGRQ92834 1020 aaKnown RBP13.02□□□□□ -0.33
LDHC-202ENST00000396215 RBM17Q96I25 401 aaKnown RBP13.02□□□□□ -0.33
LDHC-202ENST00000396215 ZNF408Q9H9D4 720 aa13.02□□□□□ -0.33
LDHC-202ENST00000396215 TIMELESSQ9UNS1 1208 aa13.02□□□□□ -0.33
LDHC-202ENST00000396215 HPS5Q9UPZ3 1129 aa13.02□□□□□ -0.33
LDHC-202ENST00000396215 KNSTRNQ9Y448 316 aa13.02□□□□□ -0.33
LDHC-202ENST00000396215 ERVV-1B6SEH8 477 aa13.01□□□□□ -0.33
LDHC-202ENST00000396215 TRPA1O75762 1119 aa13.01□□□□□ -0.33
LDHC-202ENST00000396215 AOC3Q16853 763 aa13.01□□□□□ -0.33
LDHC-202ENST00000396215 SUPT20HQ8NEM7 779 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms