RNA–Protein interactions for RNA: ENST00000395898.3

VPS13C-204, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 11,012 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-204ENST00000395898 RFC4P35249 363 aa6.28□□□□□ -1.4
VPS13C-204ENST00000395898 TDRD12Q587J7 1177 aaKnown RBP6.28□□□□□ -1.4
VPS13C-204ENST00000395898 KRT28Q7Z3Y7 464 aa6.28□□□□□ -1.4
VPS13C-204ENST00000395898 CTAGE1Q96RT6 745 aa6.28□□□□□ -1.4
VPS13C-204ENST00000395898 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP6.28□□□□□ -1.4
VPS13C-204ENST00000395898 KRT23Q9C075 422 aa6.28□□□□□ -1.4
VPS13C-204ENST00000395898 NOS1P29475 1434 aa6.28□□□□□ -1.4
VPS13C-204ENST00000395898 GSTTP1A0A1W2PQM5 241 aa6.28□□□□□ -1.4
VPS13C-204ENST00000395898 NME9Q86XW9 330 aa6.28□□□□□ -1.4
VPS13C-204ENST00000395898 F6X3S4 739 aa6.28□□□□□ -1.4
VPS13C-204ENST00000395898 GOLIM4O00461 696 aa6.28□□□□□ -1.4
VPS13C-204ENST00000395898 FERMT3Q86UX7 667 aa6.28□□□□□ -1.4
VPS13C-204ENST00000395898 CABP5Q9NP86 173 aa6.28□□□□□ -1.4
VPS13C-204ENST00000395898 BRPF3Q9ULD4 1205 aa6.28□□□□□ -1.4
VPS13C-204ENST00000395898 TEX14Q8IWB6 1497 aa6.28□□□□□ -1.4
VPS13C-204ENST00000395898 IFFO1Q0D2I5 559 aa6.28□□□□□ -1.4
VPS13C-204ENST00000395898 CCDC184Q52MB2 194 aa6.28□□□□□ -1.4
VPS13C-204ENST00000395898 MICALCLQ6ZW33 695 aa6.28□□□□□ -1.4
VPS13C-204ENST00000395898 THUMPD2Q9BTF0 503 aaKnown RBP6.28□□□□□ -1.4
VPS13C-204ENST00000395898 CRNKL1Q9BZJ0 848 aaKnown RBP6.28□□□□□ -1.4
VPS13C-204ENST00000395898 C14orf93Q9H972 538 aaKnown RBP6.28□□□□□ -1.4
VPS13C-204ENST00000395898 CGNQ9P2M7 1197 aaKnown RBP6.28□□□□□ -1.4
VPS13C-204ENST00000395898 SMARCA5O60264 1052 aaPredicted RBP6.28□□□□□ -1.4
VPS13C-204ENST00000395898 CTNNA2P26232 953 aa6.28□□□□□ -1.4
VPS13C-204ENST00000395898 GJB2P29033 226 aa6.28□□□□□ -1.4
VPS13C-204ENST00000395898 MSH6P52701 1360 aa6.28□□□□□ -1.4
VPS13C-204ENST00000395898 TBC1D9Q6ZT07 1266 aa6.27□□□□□ -1.4
VPS13C-204ENST00000395898 PAXBP1Q9Y5B6 917 aa6.27□□□□□ -1.4
VPS13C-204ENST00000395898 URI1O94763 535 aaPredicted RBP6.27□□□□□ -1.41
VPS13C-204ENST00000395898 GIGYF2Q6Y7W6 1299 aaKnown RBP6.27□□□□□ -1.41
VPS13C-204ENST00000395898 DRC1Q96MC2 740 aa6.27□□□□□ -1.41
VPS13C-204ENST00000395898 FEZ1Q99689 392 aa6.27□□□□□ -1.41
VPS13C-204ENST00000395898 UBA5Q9GZZ9 404 aa6.27□□□□□ -1.41
VPS13C-204ENST00000395898 ANKRD13DQ6ZTN6 518 aa6.27□□□□□ -1.41
VPS13C-204ENST00000395898 CCDC82Q8N4S0 544 aa6.27□□□□□ -1.41
VPS13C-204ENST00000395898 FERMT2Q96AC1 680 aa6.27□□□□□ -1.41
VPS13C-204ENST00000395898 GUCY1B3Q02153 619 aa6.27□□□□□ -1.41
VPS13C-204ENST00000395898 CCDC102BQ68D86 513 aa6.27□□□□□ -1.41
VPS13C-204ENST00000395898 UBE3BQ7Z3V4 1068 aa6.27□□□□□ -1.41
VPS13C-204ENST00000395898 NGLY1Q96IV0 654 aa6.27□□□□□ -1.41
VPS13C-204ENST00000395898 ZNF518AQ6AHZ1 1483 aa6.27□□□□□ -1.41
VPS13C-204ENST00000395898 NUP160Q12769 1436 aa6.27□□□□□ -1.41
VPS13C-204ENST00000395898 HDAC1Q13547 482 aaPredicted RBP6.27□□□□□ -1.41
VPS13C-204ENST00000395898 CCDC97Q96F63 343 aaPredicted RBP6.27□□□□□ -1.41
VPS13C-204ENST00000395898 PLCD4Q9BRC7 762 aa6.27□□□□□ -1.41
VPS13C-204ENST00000395898 CCT2P78371 535 aaKnown RBP6.27□□□□□ -1.41
VPS13C-204ENST00000395898 SPECC1Q5M775 1068 aa6.27□□□□□ -1.41
VPS13C-204ENST00000395898 IFIT1BQ5T764 474 aaKnown RBP6.27□□□□□ -1.41
VPS13C-204ENST00000395898 SYCP3Q8IZU3 236 aa6.27□□□□□ -1.41
VPS13C-204ENST00000395898 KCNG4Q8TDN1 519 aa6.27□□□□□ -1.41
VPS13C-204ENST00000395898 ADGRF5Q8IZF2 1346 aa6.27□□□□□ -1.41
VPS13C-204ENST00000395898 MTIF2P46199 727 aaKnown RBP6.27□□□□□ -1.41
VPS13C-204ENST00000395898 PPM1EQ8WY54 764 aa6.27□□□□□ -1.41
VPS13C-204ENST00000395898 PI4KAP2A4QPH2 592 aa6.27□□□□□ -1.41
VPS13C-204ENST00000395898 RBM25P49756 843 aaKnown RBP6.27□□□□□ -1.41
VPS13C-204ENST00000395898 TUBB4BP68371 445 aa6.27□□□□□ -1.41
VPS13C-204ENST00000395898 UVSSAQ2YD98 709 aa6.27□□□□□ -1.41
VPS13C-204ENST00000395898 PI4KAP1Q8N8J0 262 aa6.27□□□□□ -1.41
VPS13C-204ENST00000395898 FSIP1Q8NA03 581 aa6.27□□□□□ -1.41
VPS13C-204ENST00000395898 GOPCQ9HD26 462 aa6.27□□□□□ -1.41
VPS13C-204ENST00000395898 GNAQP50148 359 aa6.26□□□□□ -1.41
VPS13C-204ENST00000395898 CCDC113Q9H0I3 377 aa6.26□□□□□ -1.41
VPS13C-204ENST00000395898 TTC12Q9H892 705 aaPredicted RBP6.26□□□□□ -1.41
VPS13C-204ENST00000395898 C6orf229H3BNL8 230 aa6.26□□□□□ -1.41
VPS13C-204ENST00000395898 TNNT1P13805 278 aa6.26□□□□□ -1.41
VPS13C-204ENST00000395898 CCDC174Q6PII3 467 aa6.26□□□□□ -1.41
VPS13C-204ENST00000395898 EIF4G3O43432 1585 aaKnown RBP6.26□□□□□ -1.41
VPS13C-204ENST00000395898 USHBP1Q8N6Y0 703 aa6.26□□□□□ -1.41
VPS13C-204ENST00000395898 EMILIN1Q9Y6C2 1016 aa6.26□□□□□ -1.41
VPS13C-204ENST00000395898 ADGBQ8N7X0 1667 aa6.26□□□□□ -1.41
VPS13C-204ENST00000395898 BICRAQ9NZM4 1560 aa6.26□□□□□ -1.41
VPS13C-204ENST00000395898 NF2P35240 595 aa6.26□□□□□ -1.41
VPS13C-204ENST00000395898 SAMM50Q9Y512 469 aa6.26□□□□□ -1.41
VPS13C-204ENST00000395898 ACEP12821 1306 aa6.26□□□□□ -1.41
VPS13C-204ENST00000395898 ADAMTS2O95450 1211 aa6.26□□□□□ -1.41
VPS13C-204ENST00000395898 TTC22Q5TAA0 569 aa6.26□□□□□ -1.41
VPS13C-204ENST00000395898 NYXQ9GZU5 481 aa6.26□□□□□ -1.41
VPS13C-204ENST00000395898 GRM8O00222 908 aa6.26□□□□□ -1.41
VPS13C-204ENST00000395898 TSPY3P0CV98 308 aa6.26□□□□□ -1.41
VPS13C-204ENST00000395898 TSPY8P0CW00 308 aa6.26□□□□□ -1.41
VPS13C-204ENST00000395898 ZNF165P49910 485 aa6.26□□□□□ -1.41
VPS13C-204ENST00000395898 NUCB1Q02818 461 aa6.26□□□□□ -1.41
VPS13C-204ENST00000395898 TMEM87AQ8NBN3 555 aa6.26□□□□□ -1.41
VPS13C-204ENST00000395898 TBC1D5Q92609 795 aa6.26□□□□□ -1.41
VPS13C-204ENST00000395898 ESR2Q92731 530 aa6.26□□□□□ -1.41
VPS13C-204ENST00000395898 TNPO1Q92973 898 aaKnown RBP6.26□□□□□ -1.41
VPS13C-204ENST00000395898 UGGT2Q9NYU1 1516 aa6.26□□□□□ -1.41
VPS13C-204ENST00000395898 LRRC45Q96CN5 670 aa6.26□□□□□ -1.41
VPS13C-204ENST00000395898 EXOC1Q9NV70 894 aa6.26□□□□□ -1.41
VPS13C-204ENST00000395898 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP6.26□□□□□ -1.412e-6■■□□□ 13.1
VPS13C-204ENST00000395898 USP16Q9Y5T5 823 aa6.26□□□□□ -1.41
VPS13C-204ENST00000395898 WTAPQ15007 396 aa6.26□□□□□ -1.41
VPS13C-204ENST00000395898 TBC1D2Q9BYX2 928 aa6.26□□□□□ -1.41
VPS13C-204ENST00000395898 RBM27Q9P2N5 1060 aaKnown RBP6.26□□□□□ -1.41
VPS13C-204ENST00000395898 BBXQ8WY36 941 aaPredicted RBP6.25□□□□□ -1.41
VPS13C-204ENST00000395898 STX8Q9UNK0 236 aa6.25□□□□□ -1.41
VPS13C-204ENST00000395898 GNAT2P19087 354 aa6.25□□□□□ -1.41
VPS13C-204ENST00000395898 TTLL12Q14166 644 aaPredicted RBP6.25□□□□□ -1.41
VPS13C-204ENST00000395898 SMC1AQ14683 1233 aaKnown RBP6.25□□□□□ -1.41
VPS13C-204ENST00000395898 MICU3Q86XE3 530 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms