RNA–Protein interactions for RNA: ENST00000379433.5

NEDD9-201, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best) BASIC

Gene NEDD9, Length 3,341 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-201ENST00000379433 DNAJC2Q99543 621 aaKnown RBP13.1□□□□□ -0.31
NEDD9-201ENST00000379433 K7ELQ4 463 aaPredicted RBP13.09□□□□□ -0.31
NEDD9-201ENST00000379433 CHMLP26374 656 aa13.09□□□□□ -0.31
NEDD9-201ENST00000379433 FAM182BQ5T319 152 aa13.09□□□□□ -0.31
NEDD9-201ENST00000379433 ZGPATQ8N5A5 531 aaKnown RBP13.09□□□□□ -0.31
NEDD9-201ENST00000379433 ANTXR1Q9H6X2 564 aa13.09□□□□□ -0.31
NEDD9-201ENST00000379433 DIAPH3Q9NSV4 1193 aa13.09□□□□□ -0.31
NEDD9-201ENST00000379433 SLIT3O75094 1523 aa13.09□□□□□ -0.31
NEDD9-201ENST00000379433 EAF2Q96CJ1 260 aaPredicted RBP13.08□□□□□ -0.31
NEDD9-201ENST00000379433 ESYT1Q9BSJ8 1104 aa13.08□□□□□ -0.31
NEDD9-201ENST00000379433 METTL22Q9BUU2 404 aaPredicted RBP13.08□□□□□ -0.31
NEDD9-201ENST00000379433 CAMTA1Q9Y6Y1 1673 aa13.08□□□□□ -0.32
NEDD9-201ENST00000379433 GSE1Q14687 1217 aa13.08□□□□□ -0.32
NEDD9-201ENST00000379433 FAM177A1Q8N128 213 aaPredicted RBP13.08□□□□□ -0.32
NEDD9-201ENST00000379433 CHMP5Q9NZZ3 219 aa13.08□□□□□ -0.32
NEDD9-201ENST00000379433 RAD21O60216 631 aa13.08□□□□□ -0.32
NEDD9-201ENST00000379433 PKP1Q13835 747 aa13.08□□□□□ -0.32
NEDD9-201ENST00000379433 KIAA1211Q6ZU35 1233 aa13.08□□□□□ -0.32
NEDD9-201ENST00000379433 PIGBQ92521 554 aa13.08□□□□□ -0.32
NEDD9-201ENST00000379433 FAM89AQ96GI7 184 aa13.08□□□□□ -0.32
NEDD9-201ENST00000379433 TBC1D2BQ9UPU7 963 aa13.08□□□□□ -0.32
NEDD9-201ENST00000379433 PRIM1P49642 420 aaKnown RBP13.07□□□□□ -0.32
NEDD9-201ENST00000379433 ALDH1L1O75891 902 aa13.07□□□□□ -0.32
NEDD9-201ENST00000379433 SASH1O94885 1247 aa13.07□□□□□ -0.32
NEDD9-201ENST00000379433 MYCNP04198 464 aaPredicted RBP13.07□□□□□ -0.32
NEDD9-201ENST00000379433 IRX3P78415 501 aaPredicted RBP13.07□□□□□ -0.32
NEDD9-201ENST00000379433 SMIM5Q71RC9 77 aa13.07□□□□□ -0.32
NEDD9-201ENST00000379433 CARD10Q9BWT7 1032 aa13.07□□□□□ -0.32
NEDD9-201ENST00000379433 SSFA2P28290 1259 aa13.06□□□□□ -0.32
NEDD9-201ENST00000379433 POLA2Q14181 598 aa13.06□□□□□ -0.32
NEDD9-201ENST00000379433 EXOC5O00471 708 aa13.06□□□□□ -0.32
NEDD9-201ENST00000379433 RAB11FIP3O75154 756 aa13.06□□□□□ -0.32
NEDD9-201ENST00000379433 TFCP2Q12800 502 aa13.06□□□□□ -0.32
NEDD9-201ENST00000379433 SLFNL1Q499Z3 407 aa13.06□□□□□ -0.32
NEDD9-201ENST00000379433 CNTROBQ8N137 903 aa13.06□□□□□ -0.32
NEDD9-201ENST00000379433 TCEANC2Q96MN5 208 aa13.06□□□□□ -0.32
NEDD9-201ENST00000379433 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.06□□□□□ -0.32
NEDD9-201ENST00000379433 ST18O60284 1047 aa13.06□□□□□ -0.32
NEDD9-201ENST00000379433 FSD1Q9BTV5 496 aa13.06□□□□□ -0.32
NEDD9-201ENST00000379433 TIMM10P62072 90 aa13.05□□□□□ -0.32
NEDD9-201ENST00000379433 HSP90AB4PQ58FF6 505 aa13.05□□□□□ -0.32
NEDD9-201ENST00000379433 TRPM3Q9HCF6 1732 aaPredicted RBP13.05□□□□□ -0.32
NEDD9-201ENST00000379433 PI4K2BQ8TCG2 481 aa13.05□□□□□ -0.32
NEDD9-201ENST00000379433 FAM227BQ96M60 508 aa13.05□□□□□ -0.32
NEDD9-201ENST00000379433 TNPO1Q92973 898 aaKnown RBP13.05□□□□□ -0.32
NEDD9-201ENST00000379433 RABEP1Q15276 862 aa13.04□□□□□ -0.32
NEDD9-201ENST00000379433 GPATCH3Q96I76 525 aa13.04□□□□□ -0.32
NEDD9-201ENST00000379433 ECHDC1Q9NTX5 307 aa13.04□□□□□ -0.32
NEDD9-201ENST00000379433 EP400Q96L91 3159 aa13.04□□□□□ -0.32
NEDD9-201ENST00000379433 C8orf37Q96NL8 207 aa13.04□□□□□ -0.32
NEDD9-201ENST00000379433 DCCP43146 1447 aa13.03□□□□□ -0.32
NEDD9-201ENST00000379433 DDX46Q7L014 1031 aaKnown RBP13.03□□□□□ -0.32
NEDD9-201ENST00000379433 SNRKQ9NRH2 765 aa13.03□□□□□ -0.32
NEDD9-201ENST00000379433 NCAPD2Q15021 1401 aa13.03□□□□□ -0.32
NEDD9-201ENST00000379433 MCM4P33991 863 aa13.03□□□□□ -0.32
NEDD9-201ENST00000379433 FAM208AQ9UK61 1670 aaKnown RBP13.03□□□□□ -0.32
NEDD9-201ENST00000379433 PRPF40BQ6NWY9 871 aaKnown RBP13.03□□□□□ -0.32
NEDD9-201ENST00000379433 OSBPL3Q9H4L5 887 aa13.03□□□□□ -0.32
NEDD9-201ENST00000379433 COL5A2P05997 1499 aaPredicted RBP13.02□□□□□ -0.32
NEDD9-201ENST00000379433 GLRX3O76003 335 aaKnown RBP13.02□□□□□ -0.32
NEDD9-201ENST00000379433 PLBD2Q8NHP8 589 aa13.02□□□□□ -0.32
NEDD9-201ENST00000379433 DBNDD2Q9BQY9 259 aa13.02□□□□□ -0.32
NEDD9-201ENST00000379433 PUS3Q9BZE2 481 aaKnown RBP13.02□□□□□ -0.32
NEDD9-201ENST00000379433 CWC25Q9NXE8 425 aaPredicted RBP13.02□□□□□ -0.32
NEDD9-201ENST00000379433 AK9Q5TCS8 1911 aa13.02□□□□□ -0.32
NEDD9-201ENST00000379433 HEG1Q9ULI3 1381 aa13.02□□□□□ -0.32
NEDD9-201ENST00000379433 SETQ01105 290 aaPredicted RBP13.02□□□□□ -0.33
NEDD9-201ENST00000379433 LRRC24Q50LG9 513 aa13.02□□□□□ -0.33
NEDD9-201ENST00000379433 VIRMAQ69YN4 1812 aaKnown RBP13.02□□□□□ -0.33
NEDD9-201ENST00000379433 KIF1AQ12756 1690 aa13.02□□□□□ -0.33
NEDD9-201ENST00000379433 PPFIA3O75145 1194 aa13.01□□□□□ -0.33
NEDD9-201ENST00000379433 ZNF622Q969S3 477 aaKnown RBP eCLIP13.01□□□□□ -0.33
NEDD9-201ENST00000379433 SALL3Q9BXA9 1300 aa13.01□□□□□ -0.33
NEDD9-201ENST00000379433 PTH1RQ03431 593 aa13.01□□□□□ -0.33
NEDD9-201ENST00000379433 HLFQ16534 295 aa13.01□□□□□ -0.33
NEDD9-201ENST00000379433 GORABQ5T7V8 394 aa13.01□□□□□ -0.33
NEDD9-201ENST00000379433 CC2D2BQ6DHV5 1058 aa13.01□□□□□ -0.33
NEDD9-201ENST00000379433 CPDO75976 1380 aa13.01□□□□□ -0.33
NEDD9-201ENST00000379433 LRRC37A3O60309 1634 aa13.01□□□□□ -0.33
NEDD9-201ENST00000379433 ERVV-2B6SEH9 535 aa13.01□□□□□ -0.33
NEDD9-201ENST00000379433 HSP90AB3PQ58FF7 597 aa13.01□□□□□ -0.33
NEDD9-201ENST00000379433 MCTP1Q6DN14 999 aa13.01□□□□□ -0.33
NEDD9-201ENST00000379433 CCDC129Q6ZRS4 1044 aa13.01□□□□□ -0.33
NEDD9-201ENST00000379433 RASEFQ8IZ41 740 aa13.01□□□□□ -0.33
NEDD9-201ENST00000379433 ATG3Q9NT62 314 aa13.01□□□□□ -0.33
NEDD9-201ENST00000379433 ZBTB1Q9Y2K1 713 aa13.01□□□□□ -0.33
NEDD9-201ENST00000379433 ALS2Q96Q42 1657 aa13.01□□□□□ -0.33
NEDD9-201ENST00000379433 UBAP1LF5GYI3 381 aa13□□□□□ -0.33
NEDD9-201ENST00000379433 FAM98CQ17RN3 349 aaKnown RBP13□□□□□ -0.33
NEDD9-201ENST00000379433 ZBTB22O15209 634 aa13□□□□□ -0.33
NEDD9-201ENST00000379433 FKBP4Q02790 459 aaKnown RBP eCLIP13□□□□□ -0.33
NEDD9-201ENST00000379433 PTPN12Q05209 780 aaKnown RBP13□□□□□ -0.33
NEDD9-201ENST00000379433 KIF6Q6ZMV9 814 aa13□□□□□ -0.33
NEDD9-201ENST00000379433 SEC62Q99442 399 aaKnown RBP13□□□□□ -0.33
NEDD9-201ENST00000379433 STAP2Q9UGK3 403 aa13□□□□□ -0.33
NEDD9-201ENST00000379433 OVOS2A0A0G2JMS6 1433 aa13□□□□□ -0.33
NEDD9-201ENST00000379433 KCNQ2O43526 872 aa13□□□□□ -0.33
NEDD9-201ENST00000379433 TRAK2O60296 914 aa13□□□□□ -0.33
NEDD9-201ENST00000379433 CASTP20810 708 aaKnown RBP13□□□□□ -0.33
NEDD9-201ENST00000379433 DDB1Q16531 1140 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms