RNA–Protein interactions for RNA: ENST00000377011.6

VRK3-202, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,749 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-202ENST00000377011 PIM2Q9P1W9 311 aa15.71■□□□□ 0.11
VRK3-202ENST00000377011 ZNF652Q9Y2D9 606 aa15.71■□□□□ 0.11
VRK3-202ENST00000377011 IL16Q14005 1332 aa15.71■□□□□ 0.11
VRK3-202ENST00000377011 SLX4Q8IY92 1834 aa15.71■□□□□ 0.11
VRK3-202ENST00000377011 E9PSI1 815 aa15.71■□□□□ 0.1
VRK3-202ENST00000377011 PRELPP51888 382 aa15.71■□□□□ 0.1
VRK3-202ENST00000377011 EXOSC9Q06265 439 aaKnown RBP15.71■□□□□ 0.1
VRK3-202ENST00000377011 NCBP3Q53F19 620 aaKnown RBP15.71■□□□□ 0.1
VRK3-202ENST00000377011 WDR63Q8IWG1 891 aa15.71■□□□□ 0.1
VRK3-202ENST00000377011 DBF4Q9UBU7 674 aaPredicted RBP15.71■□□□□ 0.1
VRK3-202ENST00000377011 ARFGEF2Q9Y6D5 1785 aa15.7■□□□□ 0.1
VRK3-202ENST00000377011 NTSR2O95665 410 aa15.7■□□□□ 0.1
VRK3-202ENST00000377011 ATP5J2-PTCD1G3V325 749 aa15.69■□□□□ 0.1
VRK3-202ENST00000377011 PLIN1O60240 522 aa15.69■□□□□ 0.1
VRK3-202ENST00000377011 GRIN3BO60391 1043 aa15.69■□□□□ 0.1
VRK3-202ENST00000377011 TWISTNBQ3B726 338 aaPredicted RBP15.69■□□□□ 0.1
VRK3-202ENST00000377011 ZNF219Q9P2Y4 722 aaPredicted RBP15.69■□□□□ 0.1
VRK3-202ENST00000377011 RGL2O15211 777 aa15.68■□□□□ 0.1
VRK3-202ENST00000377011 SRGNP10124 158 aa15.68■□□□□ 0.1
VRK3-202ENST00000377011 DALRD3Q5D0E6 543 aaKnown RBP15.68■□□□□ 0.1
VRK3-202ENST00000377011 OLFM4Q6UX06 510 aa15.68■□□□□ 0.1
VRK3-202ENST00000377011 ZNF622Q969S3 477 aaKnown RBP eCLIP15.68■□□□□ 0.1
VRK3-202ENST00000377011 VAMP4O75379 141 aa15.68■□□□□ 0.1
VRK3-202ENST00000377011 ARHGAP27Q6ZUM4 889 aa15.68■□□□□ 0.1
VRK3-202ENST00000377011 H0YIN7 160 aa15.67■□□□□ 0.1
VRK3-202ENST00000377011 NPHP1O15259 732 aa15.67■□□□□ 0.1
VRK3-202ENST00000377011 ST5P78524 1137 aa15.67■□□□□ 0.1
VRK3-202ENST00000377011 RASSF7Q02833 373 aa15.67■□□□□ 0.1
VRK3-202ENST00000377011 TCIRG1Q13488 830 aa15.67■□□□□ 0.1
VRK3-202ENST00000377011 TPTE2Q6XPS3 522 aa15.67■□□□□ 0.1
VRK3-202ENST00000377011 ANKRD13DQ6ZTN6 518 aa15.67■□□□□ 0.1
VRK3-202ENST00000377011 NLRP10Q86W26 655 aa15.67■□□□□ 0.1
VRK3-202ENST00000377011 ZNF784Q8NCA9 323 aaPredicted RBP15.67■□□□□ 0.1
VRK3-202ENST00000377011 PLBD2Q8NHP8 589 aa15.67■□□□□ 0.1
VRK3-202ENST00000377011 COL4A1P02462 1669 aa15.67■□□□□ 0.1
VRK3-202ENST00000377011 KLRG2A4D1S0 409 aaPredicted RBP15.66■□□□□ 0.1
VRK3-202ENST00000377011 HYPKQ9NX55 129 aa15.66■□□□□ 0.1
VRK3-202ENST00000377011 LAMB2P55268 1798 aa15.66■□□□□ 0.1
VRK3-202ENST00000377011 SBF1O95248 1867 aa15.66■□□□□ 0.1
VRK3-202ENST00000377011 TAF1P21675 1872 aa15.66■□□□□ 0.1
VRK3-202ENST00000377011 DEKP35659 375 aaKnown RBP15.65■□□□□ 0.1
VRK3-202ENST00000377011 PDE6BP35913 854 aa15.65■□□□□ 0.1
VRK3-202ENST00000377011 TTLL6Q8N841 843 aa15.65■□□□□ 0.1
VRK3-202ENST00000377011 JARID2Q92833 1246 aaPredicted RBP15.65■□□□□ 0.1
VRK3-202ENST00000377011 DDRGK1Q96HY6 314 aa15.65■□□□□ 0.1
VRK3-202ENST00000377011 ISCA1Q9BUE6 129 aa15.65■□□□□ 0.1
VRK3-202ENST00000377011 C21orf2O43822 256 aa15.65■□□□□ 0.1
VRK3-202ENST00000377011 ADCY9O60503 1353 aa15.64■□□□□ 0.09
VRK3-202ENST00000377011 HCLS1P14317 486 aaPredicted RBP15.64■□□□□ 0.09
VRK3-202ENST00000377011 RTL5Q5HYW3 569 aaPredicted RBP15.64■□□□□ 0.09
VRK3-202ENST00000377011 CCDC30Q5VVM6 783 aa15.64■□□□□ 0.09
VRK3-202ENST00000377011 DDX60Q8IY21 1712 aaKnown RBP15.64■□□□□ 0.09
VRK3-202ENST00000377011 NFKBIEO00221 500 aa15.63■□□□□ 0.09
VRK3-202ENST00000377011 SLC4A2P04920 1241 aa15.63■□□□□ 0.09
VRK3-202ENST00000377011 GTF2E1P29083 439 aaPredicted RBP15.63■□□□□ 0.09
VRK3-202ENST00000377011 AAMPQ13685 434 aa15.63■□□□□ 0.09
VRK3-202ENST00000377011 C20orf194Q5TEA3 1177 aa15.63■□□□□ 0.09
VRK3-202ENST00000377011 PRPF40BQ6NWY9 871 aaKnown RBP15.63■□□□□ 0.09
VRK3-202ENST00000377011 CCDC88AQ3V6T2 1871 aa15.63■□□□□ 0.09
VRK3-202ENST00000377011 CRY2Q49AN0 593 aa15.63■□□□□ 0.09
VRK3-202ENST00000377011 C7orf43Q8WVR3 580 aa15.63■□□□□ 0.09
VRK3-202ENST00000377011 MASTLQ96GX5 879 aa15.63■□□□□ 0.09
VRK3-202ENST00000377011 MYD88Q99836 296 aa15.63■□□□□ 0.09
VRK3-202ENST00000377011 UTP14AQ9BVJ6 771 aaKnown RBP15.63■□□□□ 0.09
VRK3-202ENST00000377011 IBTKQ9P2D0 1353 aaPredicted RBP15.62■□□□□ 0.09
VRK3-202ENST00000377011 PI4KAP2A4QPH2 592 aa15.62■□□□□ 0.09
VRK3-202ENST00000377011 PDE3AQ14432 1141 aa15.62■□□□□ 0.09
VRK3-202ENST00000377011 STYK1Q6J9G0 422 aa15.62■□□□□ 0.09
VRK3-202ENST00000377011 RIC3Q7Z5B4 369 aa15.62■□□□□ 0.09
VRK3-202ENST00000377011 PI4KAP1Q8N8J0 262 aa15.62■□□□□ 0.09
VRK3-202ENST00000377011 FAM89AQ96GI7 184 aa15.62■□□□□ 0.09
VRK3-202ENST00000377011 FER1L6Q2WGJ9 1857 aa15.62■□□□□ 0.09
VRK3-202ENST00000377011 PARP10Q53GL7 1025 aa15.61■□□□□ 0.09
VRK3-202ENST00000377011 ZNF526Q8TF50 670 aaPredicted RBP15.61■□□□□ 0.09
VRK3-202ENST00000377011 NYXQ9GZU5 481 aa15.61■□□□□ 0.09
VRK3-202ENST00000377011 TRMT112Q9UI30 125 aaKnown RBP15.61■□□□□ 0.09
VRK3-202ENST00000377011 MAP3K2Q9Y2U5 619 aa15.61■□□□□ 0.09
VRK3-202ENST00000377011 IGKV5-2P06315 115 aa15.6■□□□□ 0.09
VRK3-202ENST00000377011 PPP1R42Q7Z4L9 355 aa15.6■□□□□ 0.09
VRK3-202ENST00000377011 NPR1P16066 1061 aa15.6■□□□□ 0.09
VRK3-202ENST00000377011 SLC10A5Q5PT55 438 aa15.6■□□□□ 0.09
VRK3-202ENST00000377011 C9orf131Q5VYM1 1079 aa15.6■□□□□ 0.09
VRK3-202ENST00000377011 FLIIQ13045 1269 aa15.59■□□□□ 0.09
VRK3-202ENST00000377011 CWF19L2Q2TBE0 894 aaKnown RBP15.59■□□□□ 0.09
VRK3-202ENST00000377011 HSP90AB3PQ58FF7 597 aa15.59■□□□□ 0.09
VRK3-202ENST00000377011 METTL22Q9BUU2 404 aaPredicted RBP15.59■□□□□ 0.09
VRK3-202ENST00000377011 MYH16Q9H6N6 1097 aa15.59■□□□□ 0.09
VRK3-202ENST00000377011 RIC1Q4ADV7 1423 aa15.59■□□□□ 0.09
VRK3-202ENST00000377011 F6X3S4 739 aa15.58■□□□□ 0.08
VRK3-202ENST00000377011 KSR2Q6VAB6 950 aa15.58■□□□□ 0.08
VRK3-202ENST00000377011 SNED1Q8TER0 1413 aa15.58■□□□□ 0.08
VRK3-202ENST00000377011 STK31Q9BXU1 1019 aa15.58■□□□□ 0.08
VRK3-202ENST00000377011 FAM161AQ3B820 660 aa15.57■□□□□ 0.08
VRK3-202ENST00000377011 CNKSR1Q969H4 720 aa15.57■□□□□ 0.08
VRK3-202ENST00000377011 RNF181Q9P0P0 153 aa15.57■□□□□ 0.08
VRK3-202ENST00000377011 SH3TC1Q8TE82 1336 aa15.57■□□□□ 0.08
VRK3-202ENST00000377011 TRIM28Q13263 835 aaKnown RBP15.57■□□□□ 0.08
VRK3-202ENST00000377011 HOXA10P31260 410 aaPredicted RBP15.56■□□□□ 0.08
VRK3-202ENST00000377011 BCL2L13Q9BXK5 485 aa15.56■□□□□ 0.08
VRK3-202ENST00000377011 PDZRN3Q9UPQ7 1066 aa15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms