RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 DBF4Q9UBU7 674 aaPredicted RBP19.2■□□□□ 0.66
CCDC40-202ENST00000374876 CAMTA2O94983 1202 aa19.19■□□□□ 0.66
CCDC40-202ENST00000374876 RBM25P49756 843 aaKnown RBP19.19■□□□□ 0.66
CCDC40-202ENST00000374876 CCDC30Q5VVM6 783 aa19.19■□□□□ 0.66
CCDC40-202ENST00000374876 CEP85Q6P2H3 762 aa19.19■□□□□ 0.66
CCDC40-202ENST00000374876 COPS6Q7L5N1 327 aa19.19■□□□□ 0.66
CCDC40-202ENST00000374876 NLGN1Q8N2Q7 840 aa19.19■□□□□ 0.66
CCDC40-202ENST00000374876 SGIP1Q9BQI5 828 aa19.19■□□□□ 0.66
CCDC40-202ENST00000374876 BCL11AQ9H165 835 aa19.19■□□□□ 0.66
CCDC40-202ENST00000374876 GSE1Q14687 1217 aa19.18■□□□□ 0.66
CCDC40-202ENST00000374876 MEIS3Q99687 375 aa19.18■□□□□ 0.66
CCDC40-202ENST00000374876 CCT4P50991 539 aaKnown RBP19.18■□□□□ 0.66
CCDC40-202ENST00000374876 XAGE3Q8WTP9 111 aa19.18■□□□□ 0.66
CCDC40-202ENST00000374876 PHAXQ9H814 394 aaKnown RBP19.18■□□□□ 0.66
CCDC40-202ENST00000374876 HLFQ16534 295 aa19.17■□□□□ 0.66
CCDC40-202ENST00000374876 SLC4A10Q6U841 1118 aa19.17■□□□□ 0.66
CCDC40-202ENST00000374876 BICDL1Q6ZP65 573 aa19.17■□□□□ 0.66
CCDC40-202ENST00000374876 G2E3Q7L622 706 aa19.17■□□□□ 0.66
CCDC40-202ENST00000374876 ZBTB3Q9H5J0 574 aa19.17■□□□□ 0.66
CCDC40-202ENST00000374876 MMP10P09238 476 aa19.17■□□□□ 0.66
CCDC40-202ENST00000374876 POLD1P28340 1107 aa19.17■□□□□ 0.66
CCDC40-202ENST00000374876 HSCBQ8IWL3 235 aa19.17■□□□□ 0.66
CCDC40-202ENST00000374876 TBC1D9Q6ZT07 1266 aa19.16■□□□□ 0.66
CCDC40-202ENST00000374876 HYPKQ9NX55 129 aa19.16■□□□□ 0.66
CCDC40-202ENST00000374876 TBC1D9BQ66K14 1250 aa19.15■□□□□ 0.66
CCDC40-202ENST00000374876 KIF6Q6ZMV9 814 aa19.15■□□□□ 0.66
CCDC40-202ENST00000374876 PLEKHM2Q8IWE5 1019 aa19.15■□□□□ 0.66
CCDC40-202ENST00000374876 F6X3S4 739 aa19.15■□□□□ 0.66
CCDC40-202ENST00000374876 CDC45O75419 566 aa19.15■□□□□ 0.66
CCDC40-202ENST00000374876 SPRYD3Q8NCJ5 442 aa19.15■□□□□ 0.66
CCDC40-202ENST00000374876 HMMRO75330 724 aa19.14■□□□□ 0.65
CCDC40-202ENST00000374876 TM4SF1P30408 202 aa19.14■□□□□ 0.65
CCDC40-202ENST00000374876 NFIXQ14938 502 aa19.14■□□□□ 0.65
CCDC40-202ENST00000374876 CHMP4AQ9BY43 222 aa19.14■□□□□ 0.65
CCDC40-202ENST00000374876 PPP1R1BQ9UD71 204 aaPredicted RBP19.14■□□□□ 0.65
CCDC40-202ENST00000374876 MAP3K15Q6ZN16 1313 aa19.14■□□□□ 0.65
CCDC40-202ENST00000374876 DDR1Q08345 913 aa19.13■□□□□ 0.65
CCDC40-202ENST00000374876 EIF5BO60841 1220 aaKnown RBP19.12■□□□□ 0.65
CCDC40-202ENST00000374876 GSPT1P15170 499 aaKnown RBP19.12■□□□□ 0.65
CCDC40-202ENST00000374876 ERVV-1B6SEH8 477 aa19.12■□□□□ 0.65
CCDC40-202ENST00000374876 FLIIQ13045 1269 aa19.12■□□□□ 0.65
CCDC40-202ENST00000374876 FKBP5Q13451 457 aaPredicted RBP19.12■□□□□ 0.65
CCDC40-202ENST00000374876 TTC22Q5TAA0 569 aa19.12■□□□□ 0.65
CCDC40-202ENST00000374876 CLEC4GQ6UXB4 293 aa19.12■□□□□ 0.65
CCDC40-202ENST00000374876 KLHL34Q8N239 644 aa19.12■□□□□ 0.65
CCDC40-202ENST00000374876 PARP3Q9Y6F1 533 aa19.12■□□□□ 0.65
CCDC40-202ENST00000374876 COL24A1Q17RW2 1714 aa19.11■□□□□ 0.65
CCDC40-202ENST00000374876 ANKRD13DQ6ZTN6 518 aa19.11■□□□□ 0.65
CCDC40-202ENST00000374876 C16orf71Q8IYS4 520 aaPredicted RBP19.11■□□□□ 0.65
CCDC40-202ENST00000374876 APBB1O00213 710 aa19.1■□□□□ 0.65
CCDC40-202ENST00000374876 POLRMTO00411 1230 aaKnown RBP19.1■□□□□ 0.65
CCDC40-202ENST00000374876 SNX21Q969T3 373 aa19.1■□□□□ 0.65
CCDC40-202ENST00000374876 ZNF652Q9Y2D9 606 aa19.1■□□□□ 0.65
CCDC40-202ENST00000374876 SCN7AQ01118 1682 aa19.1■□□□□ 0.65
CCDC40-202ENST00000374876 GNAI2P04899 355 aa19.1■□□□□ 0.65
CCDC40-202ENST00000374876 GIGYF2Q6Y7W6 1299 aaKnown RBP19.1■□□□□ 0.65
CCDC40-202ENST00000374876 SETDB2Q96T68 719 aa19.1■□□□□ 0.65
CCDC40-202ENST00000374876 NIP7Q9Y221 180 aaKnown RBP eCLIP19.1■□□□□ 0.65
CCDC40-202ENST00000374876 BCORQ6W2J9 1755 aa19.09■□□□□ 0.65
CCDC40-202ENST00000374876 LRP5O75197 1615 aa19.09■□□□□ 0.65
CCDC40-202ENST00000374876 FAM177BA6PVY3 158 aa19.08■□□□□ 0.65
CCDC40-202ENST00000374876 SERPINB2P05120 415 aa19.08■□□□□ 0.65
CCDC40-202ENST00000374876 GPTP24298 496 aa19.08■□□□□ 0.65
CCDC40-202ENST00000374876 PLBD2Q8NHP8 589 aa19.08■□□□□ 0.65
CCDC40-202ENST00000374876 CHMP5Q9NZZ3 219 aa19.08■□□□□ 0.65
CCDC40-202ENST00000374876 SMARCA5O60264 1052 aaPredicted RBP19.08■□□□□ 0.64
CCDC40-202ENST00000374876 RIC3Q7Z5B4 369 aa19.08■□□□□ 0.64
CCDC40-202ENST00000374876 FHDC1Q9C0D6 1143 aaPredicted RBP19.08■□□□□ 0.64
CCDC40-202ENST00000374876 NUP98P52948 1817 aa19.08■□□□□ 0.64
CCDC40-202ENST00000374876 GNAI3P08754 354 aa19.07■□□□□ 0.64
CCDC40-202ENST00000374876 CCDC24Q8N4L8 307 aa19.07■□□□□ 0.64
CCDC40-202ENST00000374876 OTUD7AQ8TE49 926 aaPredicted RBP19.07■□□□□ 0.64
CCDC40-202ENST00000374876 KIF2CQ99661 725 aa19.06■□□□□ 0.64
CCDC40-202ENST00000374876 PI4KAP2A4QPH2 592 aa19.05■□□□□ 0.64
CCDC40-202ENST00000374876 ZNF34Q8IZ26 560 aa19.05■□□□□ 0.64
CCDC40-202ENST00000374876 PI4KAP1Q8N8J0 262 aa19.05■□□□□ 0.64
CCDC40-202ENST00000374876 ATP5J2-PTCD1G3V325 749 aa19.05■□□□□ 0.64
CCDC40-202ENST00000374876 RGL2O15211 777 aa19.05■□□□□ 0.64
CCDC40-202ENST00000374876 TCIRG1Q13488 830 aa19.05■□□□□ 0.64
CCDC40-202ENST00000374876 CASC1Q6TDU7 716 aa19.05■□□□□ 0.64
CCDC40-202ENST00000374876 SYT17Q9BSW7 474 aa19.05■□□□□ 0.64
CCDC40-202ENST00000374876 MAP3K2Q9Y2U5 619 aa19.05■□□□□ 0.64
CCDC40-202ENST00000374876 UBN2Q6ZU65 1347 aa19.04■□□□□ 0.64
CCDC40-202ENST00000374876 DDX58O95786 925 aaKnown RBP19.04■□□□□ 0.64
CCDC40-202ENST00000374876 KSR2Q6VAB6 950 aa19.04■□□□□ 0.64
CCDC40-202ENST00000374876 NBPF5PQ86XG9 351 aaPredicted RBP19.03■□□□□ 0.64
CCDC40-202ENST00000374876 CARMIL3Q8ND23 1372 aa19.03■□□□□ 0.64
CCDC40-202ENST00000374876 SDSP20132 328 aa19.03■□□□□ 0.64
CCDC40-202ENST00000374876 SUSD4Q5VX71 490 aa19.03■□□□□ 0.64
CCDC40-202ENST00000374876 CACNA1FO60840 1977 aa19.02■□□□□ 0.64
CCDC40-202ENST00000374876 PXDNLA1KZ92 1463 aa19.02■□□□□ 0.64
CCDC40-202ENST00000374876 ADCY9O60503 1353 aa19.02■□□□□ 0.64
CCDC40-202ENST00000374876 NPHP1O15259 732 aa19.02■□□□□ 0.64
CCDC40-202ENST00000374876 PRR5LQ6MZQ0 368 aa19.02■□□□□ 0.64
CCDC40-202ENST00000374876 NLGN2Q8NFZ4 835 aa19.02■□□□□ 0.64
CCDC40-202ENST00000374876 MYD88Q99836 296 aa19.02■□□□□ 0.64
CCDC40-202ENST00000374876 AFDNP55196 1824 aaKnown RBP19.02■□□□□ 0.64
CCDC40-202ENST00000374876 HSP90AB3PQ58FF7 597 aa19.01■□□□□ 0.63
CCDC40-202ENST00000374876 NUTM1Q86Y26 1132 aa19.01■□□□□ 0.63
CCDC40-202ENST00000374876 METTL22Q9BUU2 404 aaPredicted RBP19.01■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms