RNA–Protein interactions for RNA: ENST00000374732.7

USP48-203, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 3,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-203ENST00000374732 ZC3H6P61129 1189 aaKnown RBP9.43□□□□□ -0.9
USP48-203ENST00000374732 PPP2R5BQ15173 497 aa9.43□□□□□ -0.9
USP48-203ENST00000374732 MYSM1Q5VVJ2 828 aa9.43□□□□□ -0.9
USP48-203ENST00000374732 NT5DC4Q86YG4 428 aa9.43□□□□□ -0.9
USP48-203ENST00000374732 TDRD7Q8NHU6 1098 aaKnown RBP9.43□□□□□ -0.9
USP48-203ENST00000374732 IFT122Q9HBG6 1241 aa9.43□□□□□ -0.9
USP48-203ENST00000374732 VWDEQ8N2E2 1590 aa9.43□□□□□ -0.9
USP48-203ENST00000374732 ZBED6P86452 979 aa9.42□□□□□ -0.9
USP48-203ENST00000374732 TOMM20Q15388 145 aa9.42□□□□□ -0.9
USP48-203ENST00000374732 ENOX2Q16206 610 aaKnown RBP9.42□□□□□ -0.9
USP48-203ENST00000374732 FNBP4Q8N3X1 1017 aaPredicted RBP9.42□□□□□ -0.9
USP48-203ENST00000374732 PMFBP1Q8TBY8 1022 aa9.42□□□□□ -0.9
USP48-203ENST00000374732 CEP63Q96MT8 703 aa9.42□□□□□ -0.9
USP48-203ENST00000374732 PCDHGA4Q9Y5G9 962 aa9.42□□□□□ -0.9
USP48-203ENST00000374732 N6AMT1Q9Y5N5 214 aa9.42□□□□□ -0.9
USP48-203ENST00000374732 ERBINQ96RT1 1412 aa9.42□□□□□ -0.9
USP48-203ENST00000374732 MAGEA8P43361 318 aa9.42□□□□□ -0.9
USP48-203ENST00000374732 NFKBIBQ15653 356 aa9.42□□□□□ -0.9
USP48-203ENST00000374732 SAPCD2Q86UD0 394 aa9.42□□□□□ -0.9
USP48-203ENST00000374732 SLF2Q8IX21 1173 aa9.42□□□□□ -0.9
USP48-203ENST00000374732 VMP1Q96GC9 406 aa9.42□□□□□ -0.9
USP48-203ENST00000374732 SCINQ9Y6U3 715 aa9.42□□□□□ -0.9
USP48-203ENST00000374732 PLEKHG3A1L390 1219 aa9.42□□□□□ -0.9
USP48-203ENST00000374732 TMCO5BA8MYB1 307 aa9.42□□□□□ -0.9
USP48-203ENST00000374732 SOCS7O14512 581 aa9.42□□□□□ -0.9
USP48-203ENST00000374732 MAP9Q49MG5 647 aa9.42□□□□□ -0.9
USP48-203ENST00000374732 UBE2Q1Q7Z7E8 422 aa9.42□□□□□ -0.9
USP48-203ENST00000374732 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP9.42□□□□□ -0.9
USP48-203ENST00000374732 TRMT1Q9NXH9 659 aaKnown RBP9.42□□□□□ -0.9
USP48-203ENST00000374732 THRAP3Q9Y2W1 955 aaKnown RBP9.42□□□□□ -0.9
USP48-203ENST00000374732 SLIT1O75093 1534 aa9.42□□□□□ -0.9
USP48-203ENST00000374732 NWD1Q149M9 1564 aa9.41□□□□□ -0.9
USP48-203ENST00000374732 ZNF132P52740 706 aa9.41□□□□□ -0.9
USP48-203ENST00000374732 WASHC5Q12768 1159 aa9.41□□□□□ -0.9
USP48-203ENST00000374732 PDAP1Q13442 181 aaKnown RBP9.41□□□□□ -0.9
USP48-203ENST00000374732 TBC1D10BQ4KMP7 808 aaPredicted RBP9.41□□□□□ -0.9
USP48-203ENST00000374732 STAG1Q8WVM7 1258 aa9.41□□□□□ -0.9
USP48-203ENST00000374732 YIPF2Q9BWQ6 316 aa9.41□□□□□ -0.9
USP48-203ENST00000374732 TMCC3Q9ULS5 477 aa9.41□□□□□ -0.9
USP48-203ENST00000374732 ABCC3O15438 1527 aa9.41□□□□□ -0.9
USP48-203ENST00000374732 ANKRD33BA6NCL7 494 aa9.41□□□□□ -0.9
USP48-203ENST00000374732 DHX8Q14562 1220 aaKnown RBP9.41□□□□□ -0.9
USP48-203ENST00000374732 ALKBH2Q6NS38 261 aa9.41□□□□□ -0.9
USP48-203ENST00000374732 DRC7Q8IY82 874 aa9.41□□□□□ -0.9
USP48-203ENST00000374732 C17orf50Q8WW18 174 aa9.41□□□□□ -0.9
USP48-203ENST00000374732 TRIM11Q96F44 468 aa9.41□□□□□ -0.9
USP48-203ENST00000374732 UTP18Q9Y5J1 556 aaKnown RBP eCLIP9.41□□□□□ -0.9
USP48-203ENST00000374732 NCOA3Q9Y6Q9 1424 aa9.41□□□□□ -0.9
USP48-203ENST00000374732 KINO60870 393 aaKnown RBP9.4□□□□□ -0.9
USP48-203ENST00000374732 FOSL1P15407 271 aa9.4□□□□□ -0.9
USP48-203ENST00000374732 MCM6Q14566 821 aa9.4□□□□□ -0.9
USP48-203ENST00000374732 HSP90B2PQ58FF3 399 aa9.4□□□□□ -0.9
USP48-203ENST00000374732 ANKRD13BQ86YJ7 626 aa9.4□□□□□ -0.9
USP48-203ENST00000374732 CEP89Q96ST8 783 aa9.4□□□□□ -0.9
USP48-203ENST00000374732 ZHX3Q9H4I2 956 aa9.4□□□□□ -0.9
USP48-203ENST00000374732 ANKRD18BA2A2Z9 1011 aa9.4□□□□□ -0.9
USP48-203ENST00000374732 TPPPO94811 219 aa9.4□□□□□ -0.9
USP48-203ENST00000374732 TCEAL1Q15170 157 aa9.4□□□□□ -0.9
USP48-203ENST00000374732 SOGA3Q5TF21 947 aa9.4□□□□□ -0.9
USP48-203ENST00000374732 SUGP1Q8IWZ8 645 aaKnown RBP9.4□□□□□ -0.9
USP48-203ENST00000374732 C8orf37Q96NL8 207 aa9.4□□□□□ -0.9
USP48-203ENST00000374732 AGAP3Q96P47 875 aa9.4□□□□□ -0.9
USP48-203ENST00000374732 POLR3CQ9BUI4 534 aaPredicted RBP9.4□□□□□ -0.9
USP48-203ENST00000374732 TEX13AQ9BXU3 409 aaPredicted RBP9.4□□□□□ -0.9
USP48-203ENST00000374732 HDAC9Q9UKV0 1011 aa9.4□□□□□ -0.9
USP48-203ENST00000374732 TMA7Q9Y2S6 64 aaKnown RBP9.4□□□□□ -0.9
USP48-203ENST00000374732 U3KPZ7 1027 aaPredicted RBP9.4□□□□□ -0.9
USP48-203ENST00000374732 V9GYY5 206 aaPredicted RBP9.4□□□□□ -0.9
USP48-203ENST00000374732 MTA2O94776 668 aa9.39□□□□□ -0.91
USP48-203ENST00000374732 PIF1Q9H611 641 aa9.39□□□□□ -0.91
USP48-203ENST00000374732 ARHGAP23Q9P227 1491 aa9.39□□□□□ -0.91
USP48-203ENST00000374732 FCHSD2O94868 740 aa9.39□□□□□ -0.91
USP48-203ENST00000374732 RAPGEF3O95398 923 aa9.39□□□□□ -0.91
USP48-203ENST00000374732 KCNV1Q6PIU1 500 aa9.39□□□□□ -0.91
USP48-203ENST00000374732 CCAR1Q8IX12 1150 aaKnown RBP9.39□□□□□ -0.91
USP48-203ENST00000374732 MYCLP1P12525 358 aaPredicted RBP9.39□□□□□ -0.91
USP48-203ENST00000374732 CLK1P49759 484 aaKnown RBP9.39□□□□□ -0.91
USP48-203ENST00000374732 NOM1Q5C9Z4 860 aaKnown RBP9.39□□□□□ -0.91
USP48-203ENST00000374732 JAKMIP3Q5VZ66 844 aa9.39□□□□□ -0.91
USP48-203ENST00000374732 TTC19Q6DKK2 380 aaPredicted RBP9.39□□□□□ -0.91
USP48-203ENST00000374732 MYLK4Q86YV6 388 aaPredicted RBP9.39□□□□□ -0.91
USP48-203ENST00000374732 GINM1Q9NU53 330 aa9.39□□□□□ -0.91
USP48-203ENST00000374732 IQGAP1P46940 1657 aa9.38□□□□□ -0.91
USP48-203ENST00000374732 PRDM15P57071 1507 aaPredicted RBP9.38□□□□□ -0.91
USP48-203ENST00000374732 GOLGA6L6A8MZA4 724 aa9.38□□□□□ -0.91
USP48-203ENST00000374732 ELL2O00472 640 aaPredicted RBP9.38□□□□□ -0.91
USP48-203ENST00000374732 TCEAL9Q9UHQ7 104 aa9.38□□□□□ -0.91
USP48-203ENST00000374732 LAMC1P11047 1609 aa9.38□□□□□ -0.91
USP48-203ENST00000374732 KIF7Q2M1P5 1343 aa9.38□□□□□ -0.91
USP48-203ENST00000374732 ROCK2O75116 1388 aaKnown RBP9.38□□□□□ -0.91
USP48-203ENST00000374732 SMARCA1P28370 1054 aa9.38□□□□□ -0.91
USP48-203ENST00000374732 STIP1P31948 543 aaKnown RBP9.38□□□□□ -0.91
USP48-203ENST00000374732 CA8P35219 290 aa9.38□□□□□ -0.91
USP48-203ENST00000374732 PLEKHG6Q3KR16 790 aa9.38□□□□□ -0.91
USP48-203ENST00000374732 C9orf131Q5VYM1 1079 aa9.38□□□□□ -0.91
USP48-203ENST00000374732 NFXL1Q6ZNB6 911 aa9.38□□□□□ -0.91
USP48-203ENST00000374732 TEKT1Q969V4 418 aa9.38□□□□□ -0.91
USP48-203ENST00000374732 MPP4Q96JB8 637 aa9.38□□□□□ -0.91
USP48-203ENST00000374732 SPC25Q9HBM1 224 aa9.38□□□□□ -0.91
USP48-203ENST00000374732 DHX29Q7Z478 1369 aaKnown RBP9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms