RNA–Protein interactions for RNA: ENST00000373010.5

USP49-202, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 5 BASIC

Gene USP49, Length 2,446 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-202ENST00000373010 RFX5P48382 616 aaPredicted RBP22.63■■□□□ 1.21
USP49-202ENST00000373010 DDX54Q8TDD1 881 aaKnown RBP22.63■■□□□ 1.21
USP49-202ENST00000373010 STRN4Q9NRL3 753 aa22.63■■□□□ 1.21
USP49-202ENST00000373010 FAM227BQ96M60 508 aa22.62■■□□□ 1.21
USP49-202ENST00000373010 CPA1P15085 419 aa22.62■■□□□ 1.21
USP49-202ENST00000373010 PTPN12Q05209 780 aaKnown RBP22.62■■□□□ 1.21
USP49-202ENST00000373010 TTC14Q96N46 770 aa22.62■■□□□ 1.21
USP49-202ENST00000373010 LARP6Q9BRS8 491 aaKnown RBP22.62■■□□□ 1.21
USP49-202ENST00000373010 COPRSQ9NQ92 184 aa22.62■■□□□ 1.21
USP49-202ENST00000373010 ABCA3Q99758 1704 aa22.62■■□□□ 1.21
USP49-202ENST00000373010 PRPF40AO75400 957 aaKnown RBP22.61■■□□□ 1.21
USP49-202ENST00000373010 BRD1O95696 1058 aa22.61■■□□□ 1.21
USP49-202ENST00000373010 IL2RBP14784 551 aa22.61■■□□□ 1.21
USP49-202ENST00000373010 NCLP19338 710 aaKnown RBP22.61■■□□□ 1.21
USP49-202ENST00000373010 TTLL7Q6ZT98 887 aa22.61■■□□□ 1.21
USP49-202ENST00000373010 ERVV-2B6SEH9 535 aa22.61■■□□□ 1.21
USP49-202ENST00000373010 NMIQ13287 307 aaPredicted RBP22.61■■□□□ 1.21
USP49-202ENST00000373010 PRPF40BQ6NWY9 871 aaKnown RBP22.61■■□□□ 1.21
USP49-202ENST00000373010 UBR2Q8IWV8 1755 aa22.6■■□□□ 1.21
USP49-202ENST00000373010 A1BGP04217 495 aa22.6■■□□□ 1.21
USP49-202ENST00000373010 AK2P54819 239 aa22.6■■□□□ 1.21
USP49-202ENST00000373010 CASP7P55210 303 aa22.6■■□□□ 1.21
USP49-202ENST00000373010 RABL6Q3YEC7 729 aaPredicted RBP22.6■■□□□ 1.21
USP49-202ENST00000373010 ISY1Q9ULR0 285 aaKnown RBP22.6■■□□□ 1.21
USP49-202ENST00000373010 TFCP2Q12800 502 aa22.6■■□□□ 1.21
USP49-202ENST00000373010 CARD10Q9BWT7 1032 aa22.6■■□□□ 1.21
USP49-202ENST00000373010 CASTP20810 708 aaKnown RBP22.59■■□□□ 1.21
USP49-202ENST00000373010 SHANK3Q9BYB0 1731 aa22.59■■□□□ 1.21
USP49-202ENST00000373010 KCPQ6ZWJ8 1503 aa22.59■■□□□ 1.21
USP49-202ENST00000373010 NKX1-1Q15270 411 aaPredicted RBP22.59■■□□□ 1.21
USP49-202ENST00000373010 FSD1Q9BTV5 496 aa22.59■■□□□ 1.21
USP49-202ENST00000373010 CCDC171Q6TFL3 1326 aa22.58■■□□□ 1.21
USP49-202ENST00000373010 ADCK5Q3MIX3 580 aa22.58■■□□□ 1.21
USP49-202ENST00000373010 RUFY3Q7L099 469 aa22.58■■□□□ 1.21
USP49-202ENST00000373010 ERBB4Q15303 1308 aa22.58■■□□□ 1.21
USP49-202ENST00000373010 CAVIN1Q6NZI2 390 aaKnown RBP22.58■■□□□ 1.2
USP49-202ENST00000373010 EDC3Q96F86 508 aaKnown RBP22.58■■□□□ 1.2
USP49-202ENST00000373010 COL15A1P39059 1388 aa22.57■■□□□ 1.2
USP49-202ENST00000373010 A0A0D9SFI3 127 aa22.57■■□□□ 1.2
USP49-202ENST00000373010 EVA1CP58658 441 aa22.57■■□□□ 1.2
USP49-202ENST00000373010 TNNI3KQ59H18 835 aa22.57■■□□□ 1.2
USP49-202ENST00000373010 JAKMIP1Q96N16 626 aaKnown RBP22.57■■□□□ 1.2
USP49-202ENST00000373010 DBNLQ9UJU6 430 aaKnown RBP22.57■■□□□ 1.2
USP49-202ENST00000373010 FPGT-TNNI3KV9GXZ4 949 aa22.57■■□□□ 1.2
USP49-202ENST00000373010 LMBR1LQ6UX01 489 aa22.57■■□□□ 1.2
USP49-202ENST00000373010 HIP1O00291 1037 aa22.56■■□□□ 1.2
USP49-202ENST00000373010 NECTIN1Q15223 517 aa22.56■■□□□ 1.2
USP49-202ENST00000373010 GPT2Q8TD30 523 aa22.56■■□□□ 1.2
USP49-202ENST00000373010 RBM8AQ9Y5S9 174 aaKnown RBP22.56■■□□□ 1.2
USP49-202ENST00000373010 NUP188Q5SRE5 1749 aa22.56■■□□□ 1.2
USP49-202ENST00000373010 PAPPAQ13219 1627 aa22.56■■□□□ 1.2
USP49-202ENST00000373010 ZBTB3Q9H5J0 574 aa22.56■■□□□ 1.2
USP49-202ENST00000373010 LIMCH1Q9UPQ0 1083 aa22.56■■□□□ 1.2
USP49-202ENST00000373010 H7C1W4 665 aa22.55■■□□□ 1.2
USP49-202ENST00000373010 KCNB2Q92953 911 aa22.55■■□□□ 1.2
USP49-202ENST00000373010 CHMP3Q9Y3E7 222 aa22.55■■□□□ 1.2
USP49-202ENST00000373010 FOXO4P98177 505 aa22.55■■□□□ 1.2
USP49-202ENST00000373010 NDUFB9Q9Y6M9 179 aa22.55■■□□□ 1.2
USP49-202ENST00000373010 KDM4FA0A1W2PPD8 638 aa22.54■■□□□ 1.2
USP49-202ENST00000373010 LARGE1O95461 756 aa22.53■■□□□ 1.2
USP49-202ENST00000373010 KCNJ4P48050 445 aa22.53■■□□□ 1.2
USP49-202ENST00000373010 MAP4K1Q92918 833 aa22.53■■□□□ 1.2
USP49-202ENST00000373010 CWC25Q9NXE8 425 aaPredicted RBP22.53■■□□□ 1.2
USP49-202ENST00000373010 RBM27Q9P2N5 1060 aaKnown RBP22.53■■□□□ 1.2
USP49-202ENST00000373010 FOXD4L6Q3SYB3 417 aaPredicted RBP22.53■■□□□ 1.2
USP49-202ENST00000373010 CREB3L3Q68CJ9 461 aa22.53■■□□□ 1.2
USP49-202ENST00000373010 FOXD4L3Q6VB84 417 aaPredicted RBP22.53■■□□□ 1.2
USP49-202ENST00000373010 DBNDD2Q9BQY9 259 aa22.53■■□□□ 1.2
USP49-202ENST00000373010 PDRG1Q9NUG6 133 aa22.53■■□□□ 1.2
USP49-202ENST00000373010 ATP5JP18859 108 aa22.52■■□□□ 1.2
USP49-202ENST00000373010 TJP1Q07157 1748 aa22.52■■□□□ 1.2
USP49-202ENST00000373010 ZSCAN23Q3MJ62 389 aa22.52■■□□□ 1.2
USP49-202ENST00000373010 FAM43AQ8N2R8 423 aa22.52■■□□□ 1.2
USP49-202ENST00000373010 ZSWIM6Q9HCJ5 1215 aa22.52■■□□□ 1.2
USP49-202ENST00000373010 TOGARAM1Q9Y4F4 1720 aa22.52■■□□□ 1.2
USP49-202ENST00000373010 RPAP1Q9BWH6 1393 aaPredicted RBP22.52■■□□□ 1.2
USP49-202ENST00000373010 SNRKQ9NRH2 765 aa22.52■■□□□ 1.2
USP49-202ENST00000373010 NSFL1CQ9UNZ2 370 aaKnown RBP22.52■■□□□ 1.2
USP49-202ENST00000373010 CYP46A1Q9Y6A2 500 aa22.51■■□□□ 1.19
USP49-202ENST00000373010 TNS2Q63HR2 1409 aa22.51■■□□□ 1.19
USP49-202ENST00000373010 ZKSCAN1P17029 563 aaPredicted RBP22.51■■□□□ 1.19
USP49-202ENST00000373010 ZNF589Q86UQ0 364 aaPredicted RBP22.51■■□□□ 1.19
USP49-202ENST00000373010 TM6SF1Q9BZW5 370 aa22.51■■□□□ 1.19
USP49-202ENST00000373010 CCDC9Q9Y3X0 531 aaKnown RBP22.51■■□□□ 1.19
USP49-202ENST00000373010 MED23Q9ULK4 1368 aa22.5■■□□□ 1.19
USP49-202ENST00000373010 SLC27A2O14975 620 aa22.5■■□□□ 1.19
USP49-202ENST00000373010 VPS53Q5VIR6 699 aa22.5■■□□□ 1.19
USP49-202ENST00000373010 DTNBO60941 627 aa22.5■■□□□ 1.19
USP49-202ENST00000373010 COL9A3Q14050 684 aaPredicted RBP22.5■■□□□ 1.19
USP49-202ENST00000373010 WDR33Q9C0J8 1336 aaKnown RBP22.49■■□□□ 1.19
USP49-202ENST00000373010 ZNF445P59923 1031 aa22.49■■□□□ 1.19
USP49-202ENST00000373010 DNAJC2Q99543 621 aaKnown RBP22.49■■□□□ 1.19
USP49-202ENST00000373010 TMOD3Q9NYL9 352 aa22.49■■□□□ 1.19
USP49-202ENST00000373010 NHSL1Q5SYE7 1610 aa22.49■■□□□ 1.19
USP49-202ENST00000373010 CHGBP05060 677 aa22.48■■□□□ 1.19
USP49-202ENST00000373010 ATG9AQ7Z3C6 839 aa22.48■■□□□ 1.19
USP49-202ENST00000373010 CCDC83Q8IWF9 413 aa22.48■■□□□ 1.19
USP49-202ENST00000373010 TAF6LQ9Y6J9 622 aa22.48■■□□□ 1.19
USP49-202ENST00000373010 ZNF330Q9Y3S2 320 aaPredicted RBP22.48■■□□□ 1.19
USP49-202ENST00000373010 ZSCAN21Q9Y5A6 473 aaPredicted RBP22.47■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms