RNA–Protein interactions for RNA: ENST00000372066.7

LDB3-204, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,598 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-204ENST00000372066 RNF181Q9P0P0 153 aa17.47■□□□□ 0.39
LDB3-204ENST00000372066 KIAA1551Q9HCM1 1747 aa17.47■□□□□ 0.39
LDB3-204ENST00000372066 HMMRO75330 724 aa17.46■□□□□ 0.39
LDB3-204ENST00000372066 APLP1P51693 650 aa17.46■□□□□ 0.39
LDB3-204ENST00000372066 TTC5Q8N0Z6 440 aa17.46■□□□□ 0.39
LDB3-204ENST00000372066 STARD3NLO95772 234 aa17.45■□□□□ 0.38
LDB3-204ENST00000372066 SERPINB2P05120 415 aa17.45■□□□□ 0.38
LDB3-204ENST00000372066 CEP85Q6P2H3 762 aa17.45■□□□□ 0.38
LDB3-204ENST00000372066 C16orf71Q8IYS4 520 aaPredicted RBP17.45■□□□□ 0.38
LDB3-204ENST00000372066 SCN11AQ9UI33 1791 aa17.45■□□□□ 0.38
LDB3-204ENST00000372066 FLIIQ13045 1269 aa17.45■□□□□ 0.38
LDB3-204ENST00000372066 BCL2L12Q9HB09 334 aa17.45■□□□□ 0.38
LDB3-204ENST00000372066 COL15A1P39059 1388 aa17.45■□□□□ 0.38
LDB3-204ENST00000372066 GNAI3P08754 354 aa17.44■□□□□ 0.38
LDB3-204ENST00000372066 TEFQ10587 303 aa17.44■□□□□ 0.38
LDB3-204ENST00000372066 BICDL1Q6ZP65 573 aa17.44■□□□□ 0.38
LDB3-204ENST00000372066 TJP1Q07157 1748 aa17.44■□□□□ 0.38
LDB3-204ENST00000372066 MRC1P22897 1456 aa17.42■□□□□ 0.38
LDB3-204ENST00000372066 A0A087WZG4 1122 aa17.42■□□□□ 0.38
LDB3-204ENST00000372066 G2E3Q7L622 706 aa17.42■□□□□ 0.38
LDB3-204ENST00000372066 RBM46Q8TBY0 533 aaKnown RBP17.42■□□□□ 0.38
LDB3-204ENST00000372066 RRAGCQ9HB90 399 aa17.42■□□□□ 0.38
LDB3-204ENST00000372066 KCPQ6ZWJ8 1503 aa17.41■□□□□ 0.38
LDB3-204ENST00000372066 EIF5P55010 431 aaKnown RBP17.41■□□□□ 0.38
LDB3-204ENST00000372066 NBR1Q14596 966 aa17.41■□□□□ 0.38
LDB3-204ENST00000372066 HDGFL1Q5TGJ6 251 aa17.41■□□□□ 0.38
LDB3-204ENST00000372066 ZNF790Q6PG37 636 aa17.41■□□□□ 0.38
LDB3-204ENST00000372066 C2CD5Q86YS7 1000 aa17.41■□□□□ 0.38
LDB3-204ENST00000372066 ZNF496Q96IT1 587 aaPredicted RBP17.41■□□□□ 0.38
LDB3-204ENST00000372066 MEIS3Q99687 375 aa17.41■□□□□ 0.38
LDB3-204ENST00000372066 C22orf23Q9BZE7 217 aa17.41■□□□□ 0.38
LDB3-204ENST00000372066 GNAI2P04899 355 aa17.4■□□□□ 0.38
LDB3-204ENST00000372066 EIF4A1P60842 406 aaKnown RBP17.4■□□□□ 0.38
LDB3-204ENST00000372066 FKBP5Q13451 457 aaPredicted RBP17.4■□□□□ 0.38
LDB3-204ENST00000372066 TTLL6Q8N841 843 aa17.4■□□□□ 0.38
LDB3-204ENST00000372066 TEX13AQ9BXU3 409 aaPredicted RBP17.4■□□□□ 0.38
LDB3-204ENST00000372066 ZNF330Q9Y3S2 320 aaPredicted RBP17.4■□□□□ 0.38
LDB3-204ENST00000372066 H0YIN7 160 aa17.4■□□□□ 0.38
LDB3-204ENST00000372066 RASSF7Q02833 373 aa17.4■□□□□ 0.38
LDB3-204ENST00000372066 MFAP1P55081 439 aaKnown RBP17.39■□□□□ 0.37
LDB3-204ENST00000372066 DNAJC5GQ8N7S2 189 aa17.39■□□□□ 0.37
LDB3-204ENST00000372066 RBM25P49756 843 aaKnown RBP17.38■□□□□ 0.37
LDB3-204ENST00000372066 FSTL1Q12841 308 aa17.38■□□□□ 0.37
LDB3-204ENST00000372066 TBC1D9BQ66K14 1250 aa17.38■□□□□ 0.37
LDB3-204ENST00000372066 SLC4A10Q6U841 1118 aa17.38■□□□□ 0.37
LDB3-204ENST00000372066 TBC1D2BQ9UPU7 963 aa17.38■□□□□ 0.37
LDB3-204ENST00000372066 LMNB1P20700 586 aa17.37■□□□□ 0.37
LDB3-204ENST00000372066 FMNL2Q96PY5 1086 aa17.37■□□□□ 0.37
LDB3-204ENST00000372066 HEG1Q9ULI3 1381 aa17.37■□□□□ 0.37
LDB3-204ENST00000372066 F6X3S4 739 aa17.36■□□□□ 0.37
LDB3-204ENST00000372066 CDC45O75419 566 aa17.36■□□□□ 0.37
LDB3-204ENST00000372066 A1BGP04217 495 aa17.36■□□□□ 0.37
LDB3-204ENST00000372066 PLEKHM2Q8IWE5 1019 aa17.36■□□□□ 0.37
LDB3-204ENST00000372066 ZNF622Q969S3 477 aaKnown RBP eCLIP17.36■□□□□ 0.37
LDB3-204ENST00000372066 BRCA1P38398 1863 aaKnown RBP17.36■□□□□ 0.37
LDB3-204ENST00000372066 BTBD11A6QL63 1104 aa17.36■□□□□ 0.37
LDB3-204ENST00000372066 SLC4A3P48751 1232 aa17.36■□□□□ 0.37
LDB3-204ENST00000372066 TTC22Q5TAA0 569 aa17.36■□□□□ 0.37
LDB3-204ENST00000372066 CCDC24Q8N4L8 307 aa17.36■□□□□ 0.37
LDB3-204ENST00000372066 IL6STP40189 918 aaPredicted RBP17.35■□□□□ 0.37
LDB3-204ENST00000372066 HTRA3P83110 453 aa17.35■□□□□ 0.37
LDB3-204ENST00000372066 KCNQ3O43525 872 aa17.34■□□□□ 0.37
LDB3-204ENST00000372066 PDE6BP35913 854 aa17.34■□□□□ 0.37
LDB3-204ENST00000372066 PRELPP51888 382 aa17.34■□□□□ 0.37
LDB3-204ENST00000372066 CARMIL3Q8ND23 1372 aa17.34■□□□□ 0.37
LDB3-204ENST00000372066 BRIP1Q9BX63 1249 aa17.34■□□□□ 0.37
LDB3-204ENST00000372066 ARFGEF1Q9Y6D6 1849 aa17.34■□□□□ 0.37
LDB3-204ENST00000372066 ZC3H4Q9UPT8 1303 aaKnown RBP17.33■□□□□ 0.37
LDB3-204ENST00000372066 GLTPD2A6NH11 291 aa17.33■□□□□ 0.37
LDB3-204ENST00000372066 NPHP1O15259 732 aa17.33■□□□□ 0.37
LDB3-204ENST00000372066 SETDB2Q96T68 719 aa17.33■□□□□ 0.37
LDB3-204ENST00000372066 ZNF219Q9P2Y4 722 aaPredicted RBP17.33■□□□□ 0.37
LDB3-204ENST00000372066 VEGFAP15692 232 aaPredicted RBP17.32■□□□□ 0.36
LDB3-204ENST00000372066 ATP8B2P98198 1209 aa17.32■□□□□ 0.36
LDB3-204ENST00000372066 PRR5LQ6MZQ0 368 aa17.32■□□□□ 0.36
LDB3-204ENST00000372066 SMC1BQ8NDV3 1235 aa17.32■□□□□ 0.36
LDB3-204ENST00000372066 OSBPL3Q9H4L5 887 aa17.32■□□□□ 0.36
LDB3-204ENST00000372066 DBF4Q9UBU7 674 aaPredicted RBP17.32■□□□□ 0.36
LDB3-204ENST00000372066 IBTKQ9P2D0 1353 aaPredicted RBP17.32■□□□□ 0.36
LDB3-204ENST00000372066 NFKBIEO00221 500 aa17.32■□□□□ 0.36
LDB3-204ENST00000372066 C21orf2O43822 256 aa17.32■□□□□ 0.36
LDB3-204ENST00000372066 TBC1D9Q6ZT07 1266 aa17.32■□□□□ 0.36
LDB3-204ENST00000372066 TBC1D2Q9BYX2 928 aa17.32■□□□□ 0.36
LDB3-204ENST00000372066 SRCIN1Q9C0H9 1055 aa17.32■□□□□ 0.36
LDB3-204ENST00000372066 USP16Q9Y5T5 823 aa17.32■□□□□ 0.36
LDB3-204ENST00000372066 CAMTA2O94983 1202 aa17.31■□□□□ 0.36
LDB3-204ENST00000372066 UBTFL1P0CB47 393 aaPredicted RBP17.31■□□□□ 0.36
LDB3-204ENST00000372066 CASC1Q6TDU7 716 aa17.31■□□□□ 0.36
LDB3-204ENST00000372066 DZIP3Q86Y13 1208 aaKnown RBP17.31■□□□□ 0.36
LDB3-204ENST00000372066 KLRG1Q96E93 195 aa17.31■□□□□ 0.36
LDB3-204ENST00000372066 HDAC5Q9UQL6 1122 aa17.31■□□□□ 0.36
LDB3-204ENST00000372066 LAMB4A4D0S4 1761 aa17.31■□□□□ 0.36
LDB3-204ENST00000372066 GSPT1P15170 499 aaKnown RBP17.3■□□□□ 0.36
LDB3-204ENST00000372066 NECTIN2Q92692 538 aa17.3■□□□□ 0.36
LDB3-204ENST00000372066 SNX21Q969T3 373 aa17.3■□□□□ 0.36
LDB3-204ENST00000372066 PIP4K2AP48426 406 aaPredicted RBP17.29■□□□□ 0.36
LDB3-204ENST00000372066 NFKBIBQ15653 356 aa17.29■□□□□ 0.36
LDB3-204ENST00000372066 DPY19L2Q6NUT2 758 aa17.29■□□□□ 0.36
LDB3-204ENST00000372066 HSCBQ8IWL3 235 aa17.29■□□□□ 0.36
LDB3-204ENST00000372066 CNBD1Q8NA66 436 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms