RNA–Protein interactions for RNA: ENST00000367256.9

SYNE1-208, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,742 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-208ENST00000367256 ARL1P40616 181 aaPredicted RBP8.36□□□□□ -1.07
SYNE1-208ENST00000367256 CTAGE1Q96RT6 745 aa8.36□□□□□ -1.07
SYNE1-208ENST00000367256 ZMYND15Q9H091 742 aa8.36□□□□□ -1.07
SYNE1-208ENST00000367256 ABCF2Q9UG63 623 aa8.36□□□□□ -1.07
SYNE1-208ENST00000367256 CCDC172P0C7W6 258 aa8.36□□□□□ -1.07
SYNE1-208ENST00000367256 KIAA0753Q2KHM9 967 aa8.36□□□□□ -1.07
SYNE1-208ENST00000367256 TMEM57Q8N5G2 664 aa8.36□□□□□ -1.07
SYNE1-208ENST00000367256 WDR66Q8TBY9 1149 aa8.36□□□□□ -1.07
SYNE1-208ENST00000367256 EPRSP07814 1512 aaKnown RBP8.36□□□□□ -1.07
SYNE1-208ENST00000367256 OPA1O60313 960 aa8.36□□□□□ -1.07
SYNE1-208ENST00000367256 RANBP6O60518 1105 aaKnown RBP8.36□□□□□ -1.07
SYNE1-208ENST00000367256 BMP15O95972 392 aa8.36□□□□□ -1.07
SYNE1-208ENST00000367256 ZNF165P49910 485 aa8.36□□□□□ -1.07
SYNE1-208ENST00000367256 TCERG1LQ5VWI1 586 aa8.36□□□□□ -1.07
SYNE1-208ENST00000367256 TTC14Q96N46 770 aa8.36□□□□□ -1.07
SYNE1-208ENST00000367256 PLVAPQ9BX97 442 aa8.36□□□□□ -1.07
SYNE1-208ENST00000367256 IL16Q14005 1332 aa8.36□□□□□ -1.07
SYNE1-208ENST00000367256 BIN1O00499 593 aa8.36□□□□□ -1.07
SYNE1-208ENST00000367256 MKNK2Q9HBH9 465 aa8.36□□□□□ -1.07
SYNE1-208ENST00000367256 ITSN2Q9NZM3 1697 aa8.36□□□□□ -1.07
SYNE1-208ENST00000367256 STX6O43752 255 aa8.36□□□□□ -1.07
SYNE1-208ENST00000367256 MYO1BO43795 1136 aa8.36□□□□□ -1.07
SYNE1-208ENST00000367256 SLC52A1Q9NWF4 448 aa8.36□□□□□ -1.07
SYNE1-208ENST00000367256 RNF41Q9H4P4 317 aaPredicted RBP8.36□□□□□ -1.07
SYNE1-208ENST00000367256 KIF5BP33176 963 aa8.35□□□□□ -1.07
SYNE1-208ENST00000367256 TMEM87AQ8NBN3 555 aa8.35□□□□□ -1.07
SYNE1-208ENST00000367256 ZNF652Q9Y2D9 606 aa8.35□□□□□ -1.07
SYNE1-208ENST00000367256 RAD54L2Q9Y4B4 1467 aa8.35□□□□□ -1.07
SYNE1-208ENST00000367256 RARSP54136 660 aaKnown RBP8.35□□□□□ -1.07
SYNE1-208ENST00000367256 SPAG1Q07617 926 aa8.35□□□□□ -1.07
SYNE1-208ENST00000367256 CCDC121Q6ZUS5 278 aa8.35□□□□□ -1.07
SYNE1-208ENST00000367256 BICD1Q96G01 975 aa8.35□□□□□ -1.07
SYNE1-208ENST00000367256 FAM200AQ8TCP9 573 aa8.35□□□□□ -1.07
SYNE1-208ENST00000367256 SNX21Q969T3 373 aa8.35□□□□□ -1.07
SYNE1-208ENST00000367256 LRRC45Q96CN5 670 aa8.35□□□□□ -1.07
SYNE1-208ENST00000367256 SMC6Q96SB8 1091 aa8.35□□□□□ -1.07
SYNE1-208ENST00000367256 ZKSCAN5Q9Y2L8 839 aa8.35□□□□□ -1.07
SYNE1-208ENST00000367256 TMPOP42166 694 aaKnown RBP8.35□□□□□ -1.07
SYNE1-208ENST00000367256 OTUD6BQ8N6M0 293 aa8.35□□□□□ -1.07
SYNE1-208ENST00000367256 EXOC6BQ9Y2D4 811 aa8.35□□□□□ -1.07
SYNE1-208ENST00000367256 NAIPQ13075 1403 aa8.35□□□□□ -1.07
SYNE1-208ENST00000367256 GOLGA8AA7E2F4 631 aa8.35□□□□□ -1.07
SYNE1-208ENST00000367256 TBCAO75347 108 aaKnown RBP8.35□□□□□ -1.07
SYNE1-208ENST00000367256 SLC5A1P13866 664 aa8.35□□□□□ -1.07
SYNE1-208ENST00000367256 PIP4K2BP78356 416 aa8.35□□□□□ -1.07
SYNE1-208ENST00000367256 GNAT3A8MTJ3 354 aa8.35□□□□□ -1.07
SYNE1-208ENST00000367256 CLGNO14967 610 aa8.35□□□□□ -1.07
SYNE1-208ENST00000367256 CFAP58Q5T655 872 aa8.35□□□□□ -1.07
SYNE1-208ENST00000367256 RSPH14Q9UHP6 348 aa8.35□□□□□ -1.07
SYNE1-208ENST00000367256 PSMC4P43686 418 aa8.35□□□□□ -1.07
SYNE1-208ENST00000367256 ZSCAN23Q3MJ62 389 aa8.35□□□□□ -1.07
SYNE1-208ENST00000367256 SMAP1Q8IYB5 467 aaPredicted RBP8.35□□□□□ -1.07
SYNE1-208ENST00000367256 ZNF644Q9H582 1327 aaPredicted RBP8.35□□□□□ -1.07
SYNE1-208ENST00000367256 TCP11L1Q9NUJ3 509 aa8.35□□□□□ -1.07
SYNE1-208ENST00000367256 NOL12Q9UGY1 213 aaKnown RBP eCLIP8.35□□□□□ -1.07
SYNE1-208ENST00000367256 CAMSAP2Q08AD1 1489 aa8.35□□□□□ -1.07
SYNE1-208ENST00000367256 CTAGE9A4FU28 777 aa8.34□□□□□ -1.07
SYNE1-208ENST00000367256 MAP3K12Q12852 859 aa8.34□□□□□ -1.07
SYNE1-208ENST00000367256 SMARCA5O60264 1052 aaPredicted RBP8.34□□□□□ -1.07
SYNE1-208ENST00000367256 SSFA2P28290 1259 aa8.34□□□□□ -1.07
SYNE1-208ENST00000367256 DDX46Q7L014 1031 aaKnown RBP8.34□□□□□ -1.07
SYNE1-208ENST00000367256 IQCA1Q86XH1 822 aa8.34□□□□□ -1.07
SYNE1-208ENST00000367256 LRRC27Q9C0I9 530 aa8.34□□□□□ -1.07
SYNE1-208ENST00000367256 RMND1Q9NWS8 449 aa8.34□□□□□ -1.07
SYNE1-208ENST00000367256 GJB2P29033 226 aa8.34□□□□□ -1.07
SYNE1-208ENST00000367256 TTC16Q8NEE8 873 aa8.34□□□□□ -1.07
SYNE1-208ENST00000367256 PRC1O43663 620 aa8.34□□□□□ -1.07
SYNE1-208ENST00000367256 GNG11P61952 73 aa8.34□□□□□ -1.07
SYNE1-208ENST00000367256 SLF2Q8IX21 1173 aa8.34□□□□□ -1.07
SYNE1-208ENST00000367256 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP8.34□□□□□ -1.07
SYNE1-208ENST00000367256 ZPR1O75312 459 aa8.34□□□□□ -1.07
SYNE1-208ENST00000367256 KRT13P13646 458 aa8.34□□□□□ -1.07
SYNE1-208ENST00000367256 PRPHP41219 470 aa8.34□□□□□ -1.07
SYNE1-208ENST00000367256 STARD3NLO95772 234 aa8.34□□□□□ -1.07
SYNE1-208ENST00000367256 TRIM47Q96LD4 638 aa8.34□□□□□ -1.07
SYNE1-208ENST00000367256 PCF11O94913 1555 aaKnown RBP8.34□□□□□ -1.07
SYNE1-208ENST00000367256 RRS1Q15050 365 aaKnown RBP8.34□□□□□ -1.07
SYNE1-208ENST00000367256 ERMNQ8TAM6 284 aa8.34□□□□□ -1.07
SYNE1-208ENST00000367256 HDAC1Q13547 482 aaPredicted RBP8.33□□□□□ -1.08
SYNE1-208ENST00000367256 ZSWIM4Q9H7M6 989 aa8.33□□□□□ -1.08
SYNE1-208ENST00000367256 NLRP5P59047 1200 aa8.33□□□□□ -1.08
SYNE1-208ENST00000367256 SAMM50Q9Y512 469 aa8.33□□□□□ -1.08
SYNE1-208ENST00000367256 NOLC1Q14978 699 aaKnown RBP eCLIP8.33□□□□□ -1.08
SYNE1-208ENST00000367256 MAP7D1Q3KQU3 841 aa8.33□□□□□ -1.08
SYNE1-208ENST00000367256 IRX3P78415 501 aaPredicted RBP8.33□□□□□ -1.08
SYNE1-208ENST00000367256 CCDC174Q6PII3 467 aa8.33□□□□□ -1.08
SYNE1-208ENST00000367256 GOLGA1Q92805 767 aa8.33□□□□□ -1.08
SYNE1-208ENST00000367256 TUBB2AQ13885 445 aa8.33□□□□□ -1.08
SYNE1-208ENST00000367256 TUBB2BQ9BVA1 445 aa8.33□□□□□ -1.08
SYNE1-208ENST00000367256 SLU7O95391 586 aaKnown RBP8.33□□□□□ -1.08
SYNE1-208ENST00000367256 PROSER2Q86WR7 435 aaPredicted RBP8.33□□□□□ -1.08
SYNE1-208ENST00000367256 CEP83Q9Y592 693 aa8.33□□□□□ -1.08
SYNE1-208ENST00000367256 MYCNP04198 464 aaPredicted RBP8.33□□□□□ -1.08
SYNE1-208ENST00000367256 CABP1Q9NZU7 370 aa8.33□□□□□ -1.08
SYNE1-208ENST00000367256 EBAG9O00559 213 aa8.33□□□□□ -1.08
SYNE1-208ENST00000367256 IFIT1P09914 478 aaKnown RBP8.33□□□□□ -1.08
SYNE1-208ENST00000367256 GUCY1B3Q02153 619 aa8.33□□□□□ -1.08
SYNE1-208ENST00000367256 CCDC129Q6ZRS4 1044 aa8.33□□□□□ -1.08
SYNE1-208ENST00000367256 GSTA5Q7RTV2 222 aa8.33□□□□□ -1.08
SYNE1-208ENST00000367256 ARFGAP2Q8N6H7 521 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms