RNA–Protein interactions for RNA: ENST00000356800.6

SMARCD3-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 1 (best) BASIC

Gene SMARCD3, Length 1,669 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-202ENST00000356800 EPHA10Q5JZY3 1008 aa22.64■■□□□ 1.21
SMARCD3-202ENST00000356800 SSH3Q8TE77 659 aa22.64■■□□□ 1.21
SMARCD3-202ENST00000356800 RTCBQ9Y3I0 505 aaKnown RBP22.64■■□□□ 1.21
SMARCD3-202ENST00000356800 UBN2Q6ZU65 1347 aa22.63■■□□□ 1.21
SMARCD3-202ENST00000356800 AK7Q96M32 723 aa22.63■■□□□ 1.21
SMARCD3-202ENST00000356800 SRGAP3O43295 1099 aa22.62■■□□□ 1.21
SMARCD3-202ENST00000356800 NUCB1Q02818 461 aa22.62■■□□□ 1.21
SMARCD3-202ENST00000356800 RTL5Q5HYW3 569 aaPredicted RBP22.62■■□□□ 1.21
SMARCD3-202ENST00000356800 ARHGEF1Q92888 912 aaKnown RBP22.61■■□□□ 1.21
SMARCD3-202ENST00000356800 BCL2L12Q9HB09 334 aa22.61■■□□□ 1.21
SMARCD3-202ENST00000356800 NARFQ9UHQ1 456 aa22.61■■□□□ 1.21
SMARCD3-202ENST00000356800 PCCAP05165 728 aaPredicted RBP22.6■■□□□ 1.21
SMARCD3-202ENST00000356800 SRP68Q9UHB9 627 aaKnown RBP22.6■■□□□ 1.21
SMARCD3-202ENST00000356800 CLEC4GQ6UXB4 293 aa22.59■■□□□ 1.21
SMARCD3-202ENST00000356800 TUBGCP6Q96RT7 1819 aa22.59■■□□□ 1.21
SMARCD3-202ENST00000356800 RGL2O15211 777 aa22.58■■□□□ 1.21
SMARCD3-202ENST00000356800 FOXO4P98177 505 aa22.58■■□□□ 1.21
SMARCD3-202ENST00000356800 RABL6Q3YEC7 729 aaPredicted RBP22.58■■□□□ 1.21
SMARCD3-202ENST00000356800 ZBTB38Q8NAP3 1195 aaPredicted RBP22.58■■□□□ 1.21
SMARCD3-202ENST00000356800 FAM89AQ96GI7 184 aa22.58■■□□□ 1.21
SMARCD3-202ENST00000356800 PHF14O94880 888 aa22.58■■□□□ 1.2
SMARCD3-202ENST00000356800 ANKRD45Q5TZF3 282 aa22.58■■□□□ 1.2
SMARCD3-202ENST00000356800 USPL1Q5W0Q7 1092 aa22.58■■□□□ 1.2
SMARCD3-202ENST00000356800 SYNE4Q8N205 404 aa22.58■■□□□ 1.2
SMARCD3-202ENST00000356800 ZNF652Q9Y2D9 606 aa22.58■■□□□ 1.2
SMARCD3-202ENST00000356800 PDE4AP27815 886 aa22.57■■□□□ 1.2
SMARCD3-202ENST00000356800 RGS3P49796 1198 aa22.57■■□□□ 1.2
SMARCD3-202ENST00000356800 TRAPPC3LQ5T215 181 aa22.57■■□□□ 1.2
SMARCD3-202ENST00000356800 CHD1LQ86WJ1 897 aa22.57■■□□□ 1.2
SMARCD3-202ENST00000356800 TSHZ2Q9NRE2 1034 aa22.57■■□□□ 1.2
SMARCD3-202ENST00000356800 EXOC6BQ9Y2D4 811 aa22.57■■□□□ 1.2
SMARCD3-202ENST00000356800 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.56■■□□□ 1.2
SMARCD3-202ENST00000356800 SUSD4Q5VX71 490 aa22.56■■□□□ 1.2
SMARCD3-202ENST00000356800 LNPKQ9C0E8 428 aa22.56■■□□□ 1.2
SMARCD3-202ENST00000356800 NIP7Q9Y221 180 aaKnown RBP eCLIP22.56■■□□□ 1.2
SMARCD3-202ENST00000356800 MYH3P11055 1940 aa22.56■■□□□ 1.2
SMARCD3-202ENST00000356800 USP42Q9H9J4 1324 aaKnown RBP22.56■■□□□ 1.2
SMARCD3-202ENST00000356800 ADRA2BP18089 450 aa22.55■■□□□ 1.2
SMARCD3-202ENST00000356800 TRMT112Q9UI30 125 aaKnown RBP22.55■■□□□ 1.2
SMARCD3-202ENST00000356800 CDHR2Q9BYE9 1310 aa22.55■■□□□ 1.2
SMARCD3-202ENST00000356800 ZPR1O75312 459 aa22.55■■□□□ 1.2
SMARCD3-202ENST00000356800 ZNF827Q17R98 1081 aa22.55■■□□□ 1.2
SMARCD3-202ENST00000356800 PARP10Q53GL7 1025 aa22.55■■□□□ 1.2
SMARCD3-202ENST00000356800 AKT1S1Q96B36 256 aa22.55■■□□□ 1.2
SMARCD3-202ENST00000356800 COL24A1Q17RW2 1714 aa22.54■■□□□ 1.2
SMARCD3-202ENST00000356800 RFC4P35249 363 aa22.54■■□□□ 1.2
SMARCD3-202ENST00000356800 LMBR1LQ6UX01 489 aa22.54■■□□□ 1.2
SMARCD3-202ENST00000356800 CAMKK2Q96RR4 588 aa22.54■■□□□ 1.2
SMARCD3-202ENST00000356800 PLA2G12BQ9BX93 195 aa22.54■■□□□ 1.2
SMARCD3-202ENST00000356800 DDX60Q8IY21 1712 aaKnown RBP22.53■■□□□ 1.2
SMARCD3-202ENST00000356800 APBB1O00213 710 aa22.53■■□□□ 1.2
SMARCD3-202ENST00000356800 HMGB2P26583 209 aaKnown RBP22.53■■□□□ 1.2
SMARCD3-202ENST00000356800 SSFA2P28290 1259 aa22.53■■□□□ 1.2
SMARCD3-202ENST00000356800 TBC1D9BQ66K14 1250 aa22.53■■□□□ 1.2
SMARCD3-202ENST00000356800 SURF6O75683 361 aaKnown RBP22.52■■□□□ 1.2
SMARCD3-202ENST00000356800 RFX5P48382 616 aaPredicted RBP22.52■■□□□ 1.2
SMARCD3-202ENST00000356800 EN1Q05925 392 aaPredicted RBP22.52■■□□□ 1.2
SMARCD3-202ENST00000356800 PA2G4Q9UQ80 394 aaKnown RBP22.52■■□□□ 1.2
SMARCD3-202ENST00000356800 NOP58Q9Y2X3 529 aaKnown RBP22.52■■□□□ 1.2
SMARCD3-202ENST00000356800 LAMB2P55268 1798 aa22.52■■□□□ 1.2
SMARCD3-202ENST00000356800 SMARCA5O60264 1052 aaPredicted RBP22.52■■□□□ 1.2
SMARCD3-202ENST00000356800 NTSR2O95665 410 aa22.52■■□□□ 1.2
SMARCD3-202ENST00000356800 EZH2Q15910 746 aaKnown RBP22.52■■□□□ 1.2
SMARCD3-202ENST00000356800 UTP14AQ9BVJ6 771 aaKnown RBP22.52■■□□□ 1.2
SMARCD3-202ENST00000356800 FAM177BA6PVY3 158 aa22.51■■□□□ 1.19
SMARCD3-202ENST00000356800 IRS4O14654 1257 aaPredicted RBP22.5■■□□□ 1.19
SMARCD3-202ENST00000356800 KLHDC4Q8TBB5 520 aa22.5■■□□□ 1.19
SMARCD3-202ENST00000356800 SH3TC1Q8TE82 1336 aa22.49■■□□□ 1.19
SMARCD3-202ENST00000356800 BICDL1Q6ZP65 573 aa22.49■■□□□ 1.19
SMARCD3-202ENST00000356800 CSF1RP07333 972 aa22.49■■□□□ 1.19
SMARCD3-202ENST00000356800 CASZ1Q86V15 1759 aa22.48■■□□□ 1.19
SMARCD3-202ENST00000356800 RAB11FIP3O75154 756 aa22.48■■□□□ 1.19
SMARCD3-202ENST00000356800 PTPN12Q05209 780 aaKnown RBP22.48■■□□□ 1.19
SMARCD3-202ENST00000356800 C16orf71Q8IYS4 520 aaPredicted RBP22.48■■□□□ 1.19
SMARCD3-202ENST00000356800 LRRCC1Q9C099 1032 aa22.48■■□□□ 1.19
SMARCD3-202ENST00000356800 TFCP2L1Q9NZI6 479 aa22.48■■□□□ 1.19
SMARCD3-202ENST00000356800 NUTM1Q86Y26 1132 aa22.47■■□□□ 1.19
SMARCD3-202ENST00000356800 COPRSQ9NQ92 184 aa22.47■■□□□ 1.19
SMARCD3-202ENST00000356800 CHMP3Q9Y3E7 222 aa22.47■■□□□ 1.19
SMARCD3-202ENST00000356800 PDE8AO60658 829 aa22.46■■□□□ 1.19
SMARCD3-202ENST00000356800 GYS1P13807 737 aa22.46■■□□□ 1.19
SMARCD3-202ENST00000356800 CTSWP56202 376 aa22.46■■□□□ 1.19
SMARCD3-202ENST00000356800 SETDB2Q96T68 719 aa22.46■■□□□ 1.19
SMARCD3-202ENST00000356800 HCLS1P14317 486 aaPredicted RBP22.46■■□□□ 1.19
SMARCD3-202ENST00000356800 HSP90AB4PQ58FF6 505 aa22.46■■□□□ 1.19
SMARCD3-202ENST00000356800 DEFB132Q7Z7B7 95 aa22.46■■□□□ 1.19
SMARCD3-202ENST00000356800 TTLL11Q8NHH1 800 aa22.46■■□□□ 1.19
SMARCD3-202ENST00000356800 RHPN1Q8TCX5 695 aa22.46■■□□□ 1.19
SMARCD3-202ENST00000356800 OTUD7AQ8TE49 926 aaPredicted RBP22.46■■□□□ 1.19
SMARCD3-202ENST00000356800 SF3B2Q13435 895 aaKnown RBP22.45■■□□□ 1.18
SMARCD3-202ENST00000356800 FAM161AQ3B820 660 aa22.45■■□□□ 1.18
SMARCD3-202ENST00000356800 SIL1Q9H173 461 aa22.45■■□□□ 1.18
SMARCD3-202ENST00000356800 ANO8Q9HCE9 1232 aaPredicted RBP22.45■■□□□ 1.18
SMARCD3-202ENST00000356800 BAG6P46379 1132 aa22.44■■□□□ 1.18
SMARCD3-202ENST00000356800 NFIXQ14938 502 aa22.44■■□□□ 1.18
SMARCD3-202ENST00000356800 ERFEQ4G0M1 354 aa22.44■■□□□ 1.18
SMARCD3-202ENST00000356800 COL23A1Q86Y22 540 aaPredicted RBP22.44■■□□□ 1.18
SMARCD3-202ENST00000356800 CCDC85AQ96PX6 553 aaPredicted RBP22.44■■□□□ 1.18
SMARCD3-202ENST00000356800 BCL11AQ9H165 835 aa22.44■■□□□ 1.18
SMARCD3-202ENST00000356800 ZBTB47Q9UFB7 747 aaPredicted RBP22.44■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms