RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 MEIS3Q99687 375 aa22.55■■□□□ 1.2
CCDC88B-202ENST00000356786 LRP2BPQ9P2M1 347 aa22.55■■□□□ 1.2
CCDC88B-202ENST00000356786 USP16Q9Y5T5 823 aa22.55■■□□□ 1.2
CCDC88B-202ENST00000356786 GOLGA6L10A0A0M3HER8 536 aa22.54■■□□□ 1.2
CCDC88B-202ENST00000356786 PROSER2Q86WR7 435 aaPredicted RBP22.54■■□□□ 1.2
CCDC88B-202ENST00000356786 SAMD9Q5K651 1589 aa22.54■■□□□ 1.2
CCDC88B-202ENST00000356786 IVLP07476 585 aa22.54■■□□□ 1.2
CCDC88B-202ENST00000356786 LARP1Q6PKG0 1096 aaKnown RBP22.54■■□□□ 1.2
CCDC88B-202ENST00000356786 PPP1R42Q7Z4L9 355 aa22.54■■□□□ 1.2
CCDC88B-202ENST00000356786 NME9Q86XW9 330 aa22.54■■□□□ 1.2
CCDC88B-202ENST00000356786 C16orf71Q8IYS4 520 aaPredicted RBP22.54■■□□□ 1.2
CCDC88B-202ENST00000356786 OGFRQ9NZT2 677 aa22.54■■□□□ 1.2
CCDC88B-202ENST00000356786 TDRD12Q587J7 1177 aaKnown RBP22.53■■□□□ 1.2
CCDC88B-202ENST00000356786 C14orf93Q9H972 538 aaKnown RBP22.53■■□□□ 1.2
CCDC88B-202ENST00000356786 ZNF213O14771 459 aa22.53■■□□□ 1.2
CCDC88B-202ENST00000356786 CAPN2P17655 700 aa22.52■■□□□ 1.2
CCDC88B-202ENST00000356786 BRF1Q92994 677 aa22.52■■□□□ 1.2
CCDC88B-202ENST00000356786 CCDC175P0C221 793 aa22.52■■□□□ 1.2
CCDC88B-202ENST00000356786 EZRP15311 586 aaKnown RBP22.52■■□□□ 1.2
CCDC88B-202ENST00000356786 AOPEPQ8N6M6 819 aa22.52■■□□□ 1.2
CCDC88B-202ENST00000356786 ANKRD44Q8N8A2 993 aa22.52■■□□□ 1.2
CCDC88B-202ENST00000356786 CCDC178Q5BJE1 867 aa22.52■■□□□ 1.2
CCDC88B-202ENST00000356786 FAM83GA6ND36 823 aa22.52■■□□□ 1.19
CCDC88B-202ENST00000356786 MATR3P43243 847 aaKnown RBP eCLIP22.52■■□□□ 1.19
CCDC88B-202ENST00000356786 ANKLE2Q86XL3 938 aa22.52■■□□□ 1.19
CCDC88B-202ENST00000356786 NAPBQ9H115 298 aa22.51■■□□□ 1.19
CCDC88B-202ENST00000356786 JADE2Q9NQC1 790 aa22.51■■□□□ 1.19
CCDC88B-202ENST00000356786 HSP90AA4PQ58FG1 418 aa22.51■■□□□ 1.19
CCDC88B-202ENST00000356786 SRRTQ9BXP5 876 aaKnown RBP22.51■■□□□ 1.19
CCDC88B-202ENST00000356786 NAA15Q9BXJ9 866 aaKnown RBP22.5■■□□□ 1.19
CCDC88B-202ENST00000356786 SLC12A7Q9Y666 1083 aa22.5■■□□□ 1.19
CCDC88B-202ENST00000356786 HMG20BQ9P0W2 317 aa22.5■■□□□ 1.19
CCDC88B-202ENST00000356786 ABCF2Q9UG63 623 aa22.5■■□□□ 1.19
CCDC88B-202ENST00000356786 CTAGE15A4D2H0 777 aa22.5■■□□□ 1.19
CCDC88B-202ENST00000356786 CTAGE8P0CG41 777 aa22.5■■□□□ 1.19
CCDC88B-202ENST00000356786 CTAGE6Q86UF2 777 aa22.5■■□□□ 1.19
CCDC88B-202ENST00000356786 CTAGE4Q8IX94 777 aa22.5■■□□□ 1.19
CCDC88B-202ENST00000356786 RHPN1Q8TCX5 695 aa22.5■■□□□ 1.19
CCDC88B-202ENST00000356786 PHAXQ9H814 394 aaKnown RBP22.5■■□□□ 1.19
CCDC88B-202ENST00000356786 PARD3Q8TEW0 1356 aa22.5■■□□□ 1.19
CCDC88B-202ENST00000356786 SYT1P21579 422 aa22.49■■□□□ 1.19
CCDC88B-202ENST00000356786 SYKP43405 635 aa22.49■■□□□ 1.19
CCDC88B-202ENST00000356786 METTL24Q5JXM2 366 aa22.49■■□□□ 1.19
CCDC88B-202ENST00000356786 RALGAPBQ86X10 1494 aa22.49■■□□□ 1.19
CCDC88B-202ENST00000356786 GOLGA8AA7E2F4 631 aa22.49■■□□□ 1.19
CCDC88B-202ENST00000356786 MINDY4BA8MYZ0 360 aa22.49■■□□□ 1.19
CCDC88B-202ENST00000356786 TARBP1Q13395 1621 aaKnown RBP22.49■■□□□ 1.19
CCDC88B-202ENST00000356786 N4BP3O15049 544 aa22.49■■□□□ 1.19
CCDC88B-202ENST00000356786 GOPCQ9HD26 462 aa22.48■■□□□ 1.19
CCDC88B-202ENST00000356786 AKAP2Q9Y2D5 859 aa22.48■■□□□ 1.19
CCDC88B-202ENST00000356786 GBP2P32456 591 aaPredicted RBP22.48■■□□□ 1.19
CCDC88B-202ENST00000356786 MAATS1Q7Z4T9 603 aa22.48■■□□□ 1.19
CCDC88B-202ENST00000356786 ALS2CR12Q96Q35 445 aa22.48■■□□□ 1.19
CCDC88B-202ENST00000356786 MYD88Q99836 296 aa22.48■■□□□ 1.19
CCDC88B-202ENST00000356786 SHANK2Q9UPX8 1470 aa22.48■■□□□ 1.19
CCDC88B-202ENST00000356786 IARSP41252 1262 aaKnown RBP22.48■■□□□ 1.19
CCDC88B-202ENST00000356786 A2MP01023 1474 aa22.48■■□□□ 1.19
CCDC88B-202ENST00000356786 TUBB4AP04350 444 aa22.48■■□□□ 1.19
CCDC88B-202ENST00000356786 LMOD1P29536 600 aaPredicted RBP22.48■■□□□ 1.19
CCDC88B-202ENST00000356786 MRPS27Q92552 414 aaKnown RBP22.48■■□□□ 1.19
CCDC88B-202ENST00000356786 NPHP3Q7Z494 1330 aa22.48■■□□□ 1.19
CCDC88B-202ENST00000356786 MTIF2P46199 727 aaKnown RBP22.47■■□□□ 1.19
CCDC88B-202ENST00000356786 SMC1AQ14683 1233 aaKnown RBP22.47■■□□□ 1.19
CCDC88B-202ENST00000356786 RAB11FIP4Q86YS3 637 aa22.47■■□□□ 1.19
CCDC88B-202ENST00000356786 IFIT3O14879 490 aaKnown RBP22.47■■□□□ 1.19
CCDC88B-202ENST00000356786 KIF20AO95235 890 aa22.47■■□□□ 1.19
CCDC88B-202ENST00000356786 SSRP1Q08945 709 aaKnown RBP22.47■■□□□ 1.19
CCDC88B-202ENST00000356786 VPS36Q86VN1 386 aa22.47■■□□□ 1.19
CCDC88B-202ENST00000356786 SLTMQ9NWH9 1034 aaKnown RBP eCLIP22.46■■□□□ 1.19
CCDC88B-202ENST00000356786 DNMT1P26358 1616 aaKnown RBP22.46■■□□□ 1.19
CCDC88B-202ENST00000356786 ZNF518AQ6AHZ1 1483 aa22.46■■□□□ 1.19
CCDC88B-202ENST00000356786 SYT10Q6XYQ8 523 aa22.46■■□□□ 1.19
CCDC88B-202ENST00000356786 PRAG1Q86YV5 1406 aa22.46■■□□□ 1.19
CCDC88B-202ENST00000356786 DBF4Q9UBU7 674 aaPredicted RBP22.46■■□□□ 1.19
CCDC88B-202ENST00000356786 ABCC2Q92887 1545 aa22.45■■□□□ 1.19
CCDC88B-202ENST00000356786 CEBPAP49715 358 aaPredicted RBP22.45■■□□□ 1.18
CCDC88B-202ENST00000356786 HAND2P61296 217 aa22.45■■□□□ 1.18
CCDC88B-202ENST00000356786 C10orf67Q8IYJ2 551 aa22.45■■□□□ 1.18
CCDC88B-202ENST00000356786 ZBTB9Q96C00 473 aa22.45■■□□□ 1.18
CCDC88B-202ENST00000356786 INTS4Q96HW7 963 aaKnown RBP22.45■■□□□ 1.18
CCDC88B-202ENST00000356786 LRRC2Q9BYS8 371 aa22.45■■□□□ 1.18
CCDC88B-202ENST00000356786 RBM8AQ9Y5S9 174 aaKnown RBP22.45■■□□□ 1.18
CCDC88B-202ENST00000356786 GOLIM4O00461 696 aa22.45■■□□□ 1.18
CCDC88B-202ENST00000356786 U2AF2P26368 475 aaKnown RBP eCLIP22.45■■□□□ 1.18
CCDC88B-202ENST00000356786 CTCFLQ8NI51 663 aaPredicted RBP22.45■■□□□ 1.18
CCDC88B-202ENST00000356786 ZBTB40Q9NUA8 1239 aa22.45■■□□□ 1.18
CCDC88B-202ENST00000356786 MICU3Q86XE3 530 aa22.45■■□□□ 1.18
CCDC88B-202ENST00000356786 GTF3C6Q969F1 213 aa22.45■■□□□ 1.18
CCDC88B-202ENST00000356786 GSTTP1A0A1W2PQM5 241 aa22.44■■□□□ 1.18
CCDC88B-202ENST00000356786 PHACTR2O75167 634 aa22.44■■□□□ 1.18
CCDC88B-202ENST00000356786 SSR1P43307 286 aaKnown RBP22.44■■□□□ 1.18
CCDC88B-202ENST00000356786 KCNG4Q8TDN1 519 aa22.44■■□□□ 1.18
CCDC88B-202ENST00000356786 ATP2C2O75185 946 aa22.43■■□□□ 1.18
CCDC88B-202ENST00000356786 KANK3Q6NY19 840 aa22.43■■□□□ 1.18
CCDC88B-202ENST00000356786 CCDC144CPQ8IYA2 1237 aa22.43■■□□□ 1.18
CCDC88B-202ENST00000356786 GOLGA1Q92805 767 aa22.43■■□□□ 1.18
CCDC88B-202ENST00000356786 TSG101Q99816 390 aa22.43■■□□□ 1.18
CCDC88B-202ENST00000356786 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP22.43■■□□□ 1.18
CCDC88B-202ENST00000356786 PI4KAP2A4QPH2 592 aa22.43■■□□□ 1.18
CCDC88B-202ENST00000356786 TERF1P54274 439 aa22.43■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms