RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 ZFP91Q96JP5 570 aaPredicted RBP12.38□□□□□ -0.43
SYNE1-203ENST00000354674 AIMP1Q12904 312 aaKnown RBP12.38□□□□□ -0.43
SYNE1-203ENST00000354674 SIRT2Q8IXJ6 389 aa12.38□□□□□ -0.43
SYNE1-203ENST00000354674 METTL22Q9BUU2 404 aaPredicted RBP12.38□□□□□ -0.43
SYNE1-203ENST00000354674 GNAI3P08754 354 aa12.37□□□□□ -0.43
SYNE1-203ENST00000354674 DMTNQ08495 405 aa12.37□□□□□ -0.43
SYNE1-203ENST00000354674 KRT27Q7Z3Y8 459 aa12.37□□□□□ -0.43
SYNE1-203ENST00000354674 LINS1Q8NG48 757 aa12.37□□□□□ -0.43
SYNE1-203ENST00000354674 KAT6BQ8WYB5 2073 aa12.37□□□□□ -0.43
SYNE1-203ENST00000354674 UTYO14607 1347 aa12.37□□□□□ -0.43
SYNE1-203ENST00000354674 FAM182BQ5T319 152 aa12.37□□□□□ -0.43
SYNE1-203ENST00000354674 ANTXR1Q9H6X2 564 aa12.37□□□□□ -0.43
SYNE1-203ENST00000354674 ITPK1Q13572 414 aa12.36□□□□□ -0.43
SYNE1-203ENST00000354674 OFD1O75665 1012 aa12.36□□□□□ -0.43
SYNE1-203ENST00000354674 IGKV5-2P06315 115 aa12.36□□□□□ -0.43
SYNE1-203ENST00000354674 ATP6V1AP38606 617 aa12.36□□□□□ -0.43
SYNE1-203ENST00000354674 INTS5Q6P9B9 1019 aaKnown RBP12.36□□□□□ -0.43
SYNE1-203ENST00000354674 FAM196AQ6ZSG2 479 aa12.36□□□□□ -0.43
SYNE1-203ENST00000354674 RIC3Q7Z5B4 369 aa12.36□□□□□ -0.43
SYNE1-203ENST00000354674 C1orf115Q9H7X2 142 aa12.36□□□□□ -0.43
SYNE1-203ENST00000354674 NCLP19338 710 aaKnown RBP12.36□□□□□ -0.43
SYNE1-203ENST00000354674 TTLL7Q6ZT98 887 aa12.36□□□□□ -0.43
SYNE1-203ENST00000354674 RPAP2Q8IXW5 612 aaPredicted RBP12.36□□□□□ -0.43
SYNE1-203ENST00000354674 ANKRD44Q8N8A2 993 aa12.36□□□□□ -0.43
SYNE1-203ENST00000354674 IL6STP40189 918 aaPredicted RBP12.35□□□□□ -0.43
SYNE1-203ENST00000354674 CEP85Q6P2H3 762 aa12.35□□□□□ -0.43
SYNE1-203ENST00000354674 GNAI2P04899 355 aa12.35□□□□□ -0.43
SYNE1-203ENST00000354674 SMC5Q8IY18 1101 aa12.35□□□□□ -0.43
SYNE1-203ENST00000354674 MYH14Q7Z406 1995 aaKnown RBP12.35□□□□□ -0.43
SYNE1-203ENST00000354674 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.34□□□□□ -0.43
SYNE1-203ENST00000354674 NEURL1BA8MQ27 555 aa12.34□□□□□ -0.43
SYNE1-203ENST00000354674 RXRBP28702 533 aa12.34□□□□□ -0.43
SYNE1-203ENST00000354674 CHMP4CQ96CF2 233 aa12.34□□□□□ -0.43
SYNE1-203ENST00000354674 ZBTB1Q9Y2K1 713 aa12.34□□□□□ -0.43
SYNE1-203ENST00000354674 TRERF1Q96PN7 1200 aa12.34□□□□□ -0.43
SYNE1-203ENST00000354674 CRKLP46109 303 aaKnown RBP12.34□□□□□ -0.43
SYNE1-203ENST00000354674 EIF5P55010 431 aaKnown RBP12.34□□□□□ -0.43
SYNE1-203ENST00000354674 CWF19L2Q2TBE0 894 aaKnown RBP12.34□□□□□ -0.43
SYNE1-203ENST00000354674 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.34□□□□□ -0.43
SYNE1-203ENST00000354674 ZSCAN30Q86W11 494 aa12.34□□□□□ -0.43
SYNE1-203ENST00000354674 CCDC87Q9NVE4 849 aa12.34□□□□□ -0.43
SYNE1-203ENST00000354674 AFDNP55196 1824 aaKnown RBP12.33□□□□□ -0.44
SYNE1-203ENST00000354674 TAF1LQ8IZX4 1826 aa12.33□□□□□ -0.44
SYNE1-203ENST00000354674 NEXNQ0ZGT2 675 aa12.33□□□□□ -0.44
SYNE1-203ENST00000354674 COL15A1P39059 1388 aa12.33□□□□□ -0.44
SYNE1-203ENST00000354674 NBPF7P0C2Y1 421 aaPredicted RBP12.33□□□□□ -0.44
SYNE1-203ENST00000354674 MYD88Q99836 296 aa12.33□□□□□ -0.44
SYNE1-203ENST00000354674 CNTNAP4Q9C0A0 1308 aa12.33□□□□□ -0.44
SYNE1-203ENST00000354674 UBTFL1P0CB47 393 aaPredicted RBP12.32□□□□□ -0.44
SYNE1-203ENST00000354674 NASPP49321 788 aaPredicted RBP12.32□□□□□ -0.44
SYNE1-203ENST00000354674 GCKRQ14397 625 aa12.32□□□□□ -0.44
SYNE1-203ENST00000354674 LINC00116Q8NCU8 138 aa12.32□□□□□ -0.44
SYNE1-203ENST00000354674 MAP3K15Q6ZN16 1313 aa12.32□□□□□ -0.44
SYNE1-203ENST00000354674 RC3H1Q5TC82 1133 aaKnown RBP12.32□□□□□ -0.44
SYNE1-203ENST00000354674 POTEAQ6S8J7 498 aa12.32□□□□□ -0.44
SYNE1-203ENST00000354674 GCC1Q96CN9 775 aa12.32□□□□□ -0.44
SYNE1-203ENST00000354674 ANKRD36CQ5JPF3 1778 aa12.31□□□□□ -0.44
SYNE1-203ENST00000354674 ERVV-1B6SEH8 477 aa12.31□□□□□ -0.44
SYNE1-203ENST00000354674 GRM8O00222 908 aa12.31□□□□□ -0.44
SYNE1-203ENST00000354674 ATP8B2P98198 1209 aa12.31□□□□□ -0.44
SYNE1-203ENST00000354674 TRIM28Q13263 835 aaKnown RBP12.31□□□□□ -0.44
SYNE1-203ENST00000354674 DCTPP1Q9H773 170 aa12.31□□□□□ -0.44
SYNE1-203ENST00000354674 LRRFIP2Q9Y608 721 aaKnown RBP12.31□□□□□ -0.44
SYNE1-203ENST00000354674 ISCA1Q9BUE6 129 aa12.31□□□□□ -0.44
SYNE1-203ENST00000354674 EP400Q96L91 3159 aa12.3□□□□□ -0.44
SYNE1-203ENST00000354674 TCIRG1Q13488 830 aa12.3□□□□□ -0.44
SYNE1-203ENST00000354674 MTX1Q13505 466 aa12.3□□□□□ -0.44
SYNE1-203ENST00000354674 KIF6Q6ZMV9 814 aa12.3□□□□□ -0.44
SYNE1-203ENST00000354674 HDAC5Q9UQL6 1122 aa12.3□□□□□ -0.44
SYNE1-203ENST00000354674 BCORQ6W2J9 1755 aa12.3□□□□□ -0.44
SYNE1-203ENST00000354674 CASP7P55210 303 aa12.3□□□□□ -0.44
SYNE1-203ENST00000354674 GIGYF2Q6Y7W6 1299 aaKnown RBP12.3□□□□□ -0.44
SYNE1-203ENST00000354674 MAP7D2Q96T17 732 aa12.3□□□□□ -0.44
SYNE1-203ENST00000354674 NUP98P52948 1817 aa12.3□□□□□ -0.44
SYNE1-203ENST00000354674 MFAP1P55081 439 aaKnown RBP12.3□□□□□ -0.44
SYNE1-203ENST00000354674 POLA2Q14181 598 aa12.3□□□□□ -0.44
SYNE1-203ENST00000354674 ZBTB3Q9H5J0 574 aa12.3□□□□□ -0.44
SYNE1-203ENST00000354674 UPF2Q9HAU5 1272 aaKnown RBP12.3□□□□□ -0.44
SYNE1-203ENST00000354674 C9orf78Q9NZ63 289 aaPredicted RBP12.3□□□□□ -0.44
SYNE1-203ENST00000354674 NUCB1Q02818 461 aa12.29□□□□□ -0.44
SYNE1-203ENST00000354674 ATP2B3Q16720 1220 aa12.29□□□□□ -0.44
SYNE1-203ENST00000354674 CCDC191Q8NCU4 936 aa12.29□□□□□ -0.44
SYNE1-203ENST00000354674 SECISBP2LQ93073 1101 aaKnown RBP12.29□□□□□ -0.44
SYNE1-203ENST00000354674 KAZALD1Q96I82 304 aa12.29□□□□□ -0.44
SYNE1-203ENST00000354674 PDZRN3Q9UPQ7 1066 aa12.29□□□□□ -0.44
SYNE1-203ENST00000354674 C4BP0C0L5 1744 aa12.29□□□□□ -0.44
SYNE1-203ENST00000354674 H7C1W4 665 aa12.29□□□□□ -0.44
SYNE1-203ENST00000354674 ZNF771Q7L3S4 317 aaPredicted RBP12.29□□□□□ -0.44
SYNE1-203ENST00000354674 SSH3Q8TE77 659 aa12.29□□□□□ -0.44
SYNE1-203ENST00000354674 CCNL1Q9UK58 526 aaPredicted RBP12.29□□□□□ -0.44
SYNE1-203ENST00000354674 RGL2O15211 777 aa12.28□□□□□ -0.44
SYNE1-203ENST00000354674 PNMA6EA0A0J9YXQ4 647 aa12.28□□□□□ -0.44
SYNE1-203ENST00000354674 ATP5J2-PTCD1G3V325 749 aa12.28□□□□□ -0.44
SYNE1-203ENST00000354674 HMMRO75330 724 aa12.28□□□□□ -0.44
SYNE1-203ENST00000354674 HLFQ16534 295 aa12.28□□□□□ -0.44
SYNE1-203ENST00000354674 TPRNQ4KMQ1 711 aa12.28□□□□□ -0.44
SYNE1-203ENST00000354674 DZIP3Q86Y13 1208 aaKnown RBP12.28□□□□□ -0.44
SYNE1-203ENST00000354674 CCDC94Q9BW85 323 aaPredicted RBP12.28□□□□□ -0.44
SYNE1-203ENST00000354674 SUCLG2Q96I99 432 aa12.28□□□□□ -0.44
SYNE1-203ENST00000354674 CWC25Q9NXE8 425 aaPredicted RBP12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms