RNA–Protein interactions for RNA: ENST00000347037.9

SYNE1-202, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 3,798 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-202ENST00000347037 USP31Q70CQ4 1352 aa13.15□□□□□ -0.3
SYNE1-202ENST00000347037 MAP3K5Q99683 1374 aa13.15□□□□□ -0.3
SYNE1-202ENST00000347037 TTC41PQ6P2S7 1318 aa13.15□□□□□ -0.3
SYNE1-202ENST00000347037 CCDC171Q6TFL3 1326 aa13.15□□□□□ -0.3
SYNE1-202ENST00000347037 TPD52L1Q16890 204 aaPredicted RBP13.15□□□□□ -0.31
SYNE1-202ENST00000347037 SIRT1Q96EB6 747 aa13.15□□□□□ -0.31
SYNE1-202ENST00000347037 PTPRUQ92729 1446 aa13.14□□□□□ -0.31
SYNE1-202ENST00000347037 GTPBP4Q9BZE4 634 aaKnown RBP13.14□□□□□ -0.31
SYNE1-202ENST00000347037 DNAJC25Q9H1X3 360 aa13.14□□□□□ -0.31
SYNE1-202ENST00000347037 KDRP35968 1356 aa13.14□□□□□ -0.31
SYNE1-202ENST00000347037 PLEKHG1Q9ULL1 1385 aa13.14□□□□□ -0.31
SYNE1-202ENST00000347037 CHD2O14647 1828 aaKnown RBP13.14□□□□□ -0.31
SYNE1-202ENST00000347037 NMIQ13287 307 aaPredicted RBP13.14□□□□□ -0.31
SYNE1-202ENST00000347037 NAA30Q147X3 362 aaPredicted RBP13.14□□□□□ -0.31
SYNE1-202ENST00000347037 BEND3Q5T5X7 828 aa13.14□□□□□ -0.31
SYNE1-202ENST00000347037 LARP1Q6PKG0 1096 aaKnown RBP13.14□□□□□ -0.31
SYNE1-202ENST00000347037 PDCP20941 246 aa13.13□□□□□ -0.31
SYNE1-202ENST00000347037 CEBPZQ03701 1054 aaKnown RBP13.13□□□□□ -0.31
SYNE1-202ENST00000347037 BLOC1S2Q6QNY1 142 aa13.13□□□□□ -0.31
SYNE1-202ENST00000347037 ANKRD7Q92527 254 aa13.13□□□□□ -0.31
SYNE1-202ENST00000347037 CCDC8Q9H0W5 538 aaPredicted RBP13.13□□□□□ -0.31
SYNE1-202ENST00000347037 CLIP2Q9UDT6 1046 aa13.13□□□□□ -0.31
SYNE1-202ENST00000347037 RGPD1P0DJD0 1748 aa13.13□□□□□ -0.31
SYNE1-202ENST00000347037 CEBPAP49715 358 aaPredicted RBP13.13□□□□□ -0.31
SYNE1-202ENST00000347037 ZNF165P49910 485 aa13.13□□□□□ -0.31
SYNE1-202ENST00000347037 FOSBP53539 338 aa13.13□□□□□ -0.31
SYNE1-202ENST00000347037 NECTIN1Q15223 517 aa13.13□□□□□ -0.31
SYNE1-202ENST00000347037 PLPPR3Q6T4P5 718 aa13.13□□□□□ -0.31
SYNE1-202ENST00000347037 TM6SF1Q9BZW5 370 aa13.13□□□□□ -0.31
SYNE1-202ENST00000347037 PSMA5P28066 241 aa13.12□□□□□ -0.31
SYNE1-202ENST00000347037 ZNF75DP51815 510 aa13.12□□□□□ -0.31
SYNE1-202ENST00000347037 NCBP1Q09161 790 aaKnown RBP13.12□□□□□ -0.31
SYNE1-202ENST00000347037 ZSCAN25Q6NSZ9 544 aa13.12□□□□□ -0.31
SYNE1-202ENST00000347037 EVI5LQ96CN4 794 aa13.12□□□□□ -0.31
SYNE1-202ENST00000347037 FAM208AQ9UK61 1670 aaKnown RBP13.12□□□□□ -0.31
SYNE1-202ENST00000347037 KCNQ3O43525 872 aa13.12□□□□□ -0.31
SYNE1-202ENST00000347037 NR1I2O75469 434 aa13.12□□□□□ -0.31
SYNE1-202ENST00000347037 FSD1Q9BTV5 496 aa13.12□□□□□ -0.31
SYNE1-202ENST00000347037 SCAND2PQ9GZW5 306 aaPredicted RBP13.12□□□□□ -0.31
SYNE1-202ENST00000347037 SLC27A2O14975 620 aa13.12□□□□□ -0.31
SYNE1-202ENST00000347037 CCDC112Q8NEF3 446 aa13.12□□□□□ -0.31
SYNE1-202ENST00000347037 SIL1Q9H173 461 aa13.12□□□□□ -0.31
SYNE1-202ENST00000347037 BOLA2Q9H3K6 86 aa13.12□□□□□ -0.31
SYNE1-202ENST00000347037 CTIFO43310 598 aaKnown RBP13.11□□□□□ -0.31
SYNE1-202ENST00000347037 TRHP20396 242 aaPredicted RBP13.11□□□□□ -0.31
SYNE1-202ENST00000347037 LTKP29376 864 aa13.11□□□□□ -0.31
SYNE1-202ENST00000347037 HOXC9P31274 260 aa13.11□□□□□ -0.31
SYNE1-202ENST00000347037 ZNF771Q7L3S4 317 aaPredicted RBP13.11□□□□□ -0.31
SYNE1-202ENST00000347037 LEO1Q8WVC0 666 aaPredicted RBP13.11□□□□□ -0.31
SYNE1-202ENST00000347037 DDX11Q96FC9 970 aa13.11□□□□□ -0.31
SYNE1-202ENST00000347037 TTC21AQ8NDW8 1320 aa13.11□□□□□ -0.31
SYNE1-202ENST00000347037 A0A0U1RQG5 324 aaPredicted RBP13.11□□□□□ -0.31
SYNE1-202ENST00000347037 LGR6Q9HBX8 967 aa13.11□□□□□ -0.31
SYNE1-202ENST00000347037 PXDNLA1KZ92 1463 aa13.11□□□□□ -0.31
SYNE1-202ENST00000347037 DDX19AQ9NUU7 478 aaKnown RBP13.11□□□□□ -0.31
SYNE1-202ENST00000347037 TAF6LQ9Y6J9 622 aa13.11□□□□□ -0.31
SYNE1-202ENST00000347037 SMTNL1A8MU46 457 aa13.1□□□□□ -0.31
SYNE1-202ENST00000347037 GOLGA6L19H0YKK7 550 aa13.1□□□□□ -0.31
SYNE1-202ENST00000347037 HSP90B1P14625 803 aaKnown RBP13.1□□□□□ -0.31
SYNE1-202ENST00000347037 RNF20Q5VTR2 975 aa13.1□□□□□ -0.31
SYNE1-202ENST00000347037 FBXW7Q969H0 707 aa13.1□□□□□ -0.31
SYNE1-202ENST00000347037 H3BQV1 296 aa13.1□□□□□ -0.31
SYNE1-202ENST00000347037 CWF19L2Q2TBE0 894 aaKnown RBP13.1□□□□□ -0.31
SYNE1-202ENST00000347037 IFFO2Q5TF58 517 aa13.1□□□□□ -0.31
SYNE1-202ENST00000347037 CLSTN2Q9H4D0 955 aa13.1□□□□□ -0.31
SYNE1-202ENST00000347037 RGPD8O14715 1765 aaPredicted RBP13.1□□□□□ -0.31
SYNE1-202ENST00000347037 A0A0D9SFI3 127 aa13.1□□□□□ -0.31
SYNE1-202ENST00000347037 CACTINQ8WUQ7 758 aaKnown RBP13.1□□□□□ -0.31
SYNE1-202ENST00000347037 MAP3K2Q9Y2U5 619 aa13.1□□□□□ -0.31
SYNE1-202ENST00000347037 ELP1O95163 1332 aa13.1□□□□□ -0.31
SYNE1-202ENST00000347037 NPHP3Q7Z494 1330 aa13.1□□□□□ -0.31
SYNE1-202ENST00000347037 JAK2O60674 1132 aa13.09□□□□□ -0.31
SYNE1-202ENST00000347037 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.09□□□□□ -0.31
SYNE1-202ENST00000347037 V9GYY5 206 aaPredicted RBP13.09□□□□□ -0.31
SYNE1-202ENST00000347037 EIF4A1P60842 406 aaKnown RBP13.09□□□□□ -0.31
SYNE1-202ENST00000347037 TEFQ10587 303 aa13.09□□□□□ -0.31
SYNE1-202ENST00000347037 G3BP1Q13283 466 aaKnown RBP eCLIP13.09□□□□□ -0.31
SYNE1-202ENST00000347037 MAP4K1Q92918 833 aa13.09□□□□□ -0.31
SYNE1-202ENST00000347037 SETD1BQ9UPS6 1966 aaKnown RBP13.09□□□□□ -0.31
SYNE1-202ENST00000347037 MARF1Q9Y4F3 1742 aaKnown RBP13.09□□□□□ -0.31
SYNE1-202ENST00000347037 USP42Q9H9J4 1324 aaKnown RBP13.09□□□□□ -0.31
SYNE1-202ENST00000347037 ANKRD1Q15327 319 aa13.09□□□□□ -0.31
SYNE1-202ENST00000347037 CCDC144BQ3MJ40 725 aa13.09□□□□□ -0.31
SYNE1-202ENST00000347037 PLA2G4DQ86XP0 818 aa13.09□□□□□ -0.31
SYNE1-202ENST00000347037 ERC1Q8IUD2 1116 aa13.09□□□□□ -0.31
SYNE1-202ENST00000347037 CCDC144CPQ8IYA2 1237 aa13.09□□□□□ -0.31
SYNE1-202ENST00000347037 ABTB2Q8N961 1025 aa13.09□□□□□ -0.31
SYNE1-202ENST00000347037 FGD1P98174 961 aa13.08□□□□□ -0.31
SYNE1-202ENST00000347037 TLR7Q9NYK1 1049 aaKnown RBP13.08□□□□□ -0.31
SYNE1-202ENST00000347037 RPS6KB1P23443 525 aa13.08□□□□□ -0.32
SYNE1-202ENST00000347037 ARID5BQ14865 1188 aa13.08□□□□□ -0.32
SYNE1-202ENST00000347037 CEP135Q66GS9 1140 aa13.08□□□□□ -0.32
SYNE1-202ENST00000347037 PGBD1Q96JS3 809 aa13.08□□□□□ -0.32
SYNE1-202ENST00000347037 PODXL2Q9NZ53 605 aa13.08□□□□□ -0.32
SYNE1-202ENST00000347037 BTBD11A6QL63 1104 aa13.08□□□□□ -0.32
SYNE1-202ENST00000347037 KIF20AO95235 890 aa13.08□□□□□ -0.32
SYNE1-202ENST00000347037 AIMP1Q12904 312 aaKnown RBP13.08□□□□□ -0.32
SYNE1-202ENST00000347037 FILIP1Q7Z7B0 1213 aa13.08□□□□□ -0.32
SYNE1-202ENST00000347037 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.08□□□□□ -0.32
SYNE1-202ENST00000347037 A0A087WWV3 80 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms