RNA–Protein interactions for RNA: ENST00000345734.7

ATG4A-202, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best) BASIC

Gene ATG4A, Length 2,129 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-202ENST00000345734 SLC52A2Q9HAB3 445 aa11.54□□□□□ -0.56
ATG4A-202ENST00000345734 LTBP4Q8N2S1 1624 aa11.53□□□□□ -0.56
ATG4A-202ENST00000345734 FOSBP53539 338 aa11.53□□□□□ -0.56
ATG4A-202ENST00000345734 LARP1Q6PKG0 1096 aaKnown RBP11.53□□□□□ -0.56
ATG4A-202ENST00000345734 ANKRD44Q8N8A2 993 aa11.53□□□□□ -0.56
ATG4A-202ENST00000345734 BEGAINQ9BUH8 593 aa11.53□□□□□ -0.56
ATG4A-202ENST00000345734 PARP4Q9UKK3 1724 aaKnown RBP11.53□□□□□ -0.56
ATG4A-202ENST00000345734 IPO9Q96P70 1041 aaKnown RBP11.53□□□□□ -0.56
ATG4A-202ENST00000345734 TMUB1Q9BVT8 246 aa11.53□□□□□ -0.56
ATG4A-202ENST00000345734 PROSER3Q2NL68 480 aa11.52□□□□□ -0.57
ATG4A-202ENST00000345734 ZNF790Q6PG37 636 aa11.52□□□□□ -0.57
ATG4A-202ENST00000345734 DCAF5Q96JK2 942 aa11.52□□□□□ -0.57
ATG4A-202ENST00000345734 ADAM33Q9BZ11 813 aa11.52□□□□□ -0.57
ATG4A-202ENST00000345734 C5P01031 1676 aa11.52□□□□□ -0.57
ATG4A-202ENST00000345734 PLEKHG2Q9H7P9 1386 aa11.52□□□□□ -0.57
ATG4A-202ENST00000345734 EVA1CP58658 441 aa11.51□□□□□ -0.57
ATG4A-202ENST00000345734 RPAP2Q8IXW5 612 aaPredicted RBP11.51□□□□□ -0.57
ATG4A-202ENST00000345734 FBXW7Q969H0 707 aa11.51□□□□□ -0.57
ATG4A-202ENST00000345734 PCMTD1Q96MG8 357 aaPredicted RBP11.51□□□□□ -0.57
ATG4A-202ENST00000345734 CARD10Q9BWT7 1032 aa11.51□□□□□ -0.57
ATG4A-202ENST00000345734 DCTPP1Q9H773 170 aa11.51□□□□□ -0.57
ATG4A-202ENST00000345734 POLR3EQ9NVU0 708 aa11.51□□□□□ -0.57
ATG4A-202ENST00000345734 MRC1P22897 1456 aa11.51□□□□□ -0.57
ATG4A-202ENST00000345734 SHANK3Q9BYB0 1731 aa11.5□□□□□ -0.57
ATG4A-202ENST00000345734 PXDNLA1KZ92 1463 aa11.5□□□□□ -0.57
ATG4A-202ENST00000345734 POTEJP0CG39 1038 aa11.5□□□□□ -0.57
ATG4A-202ENST00000345734 ZCRB1Q8TBF4 217 aaKnown RBP11.5□□□□□ -0.57
ATG4A-202ENST00000345734 PODXL2Q9NZ53 605 aa11.5□□□□□ -0.57
ATG4A-202ENST00000345734 AHDC1Q5TGY3 1603 aaPredicted RBP11.5□□□□□ -0.57
ATG4A-202ENST00000345734 PI4KAP2A4QPH2 592 aa11.5□□□□□ -0.57
ATG4A-202ENST00000345734 GNAI2P04899 355 aa11.5□□□□□ -0.57
ATG4A-202ENST00000345734 HSP90AB1P08238 724 aaKnown RBP11.5□□□□□ -0.57
ATG4A-202ENST00000345734 IL2RBP14784 551 aa11.5□□□□□ -0.57
ATG4A-202ENST00000345734 PI4KAP1Q8N8J0 262 aa11.5□□□□□ -0.57
ATG4A-202ENST00000345734 ZDHHC16Q969W1 377 aa11.5□□□□□ -0.57
ATG4A-202ENST00000345734 CHMP4AQ9BY43 222 aa11.5□□□□□ -0.57
ATG4A-202ENST00000345734 DBF4Q9UBU7 674 aaPredicted RBP11.5□□□□□ -0.57
ATG4A-202ENST00000345734 DEKP35659 375 aaKnown RBP11.49□□□□□ -0.57
ATG4A-202ENST00000345734 PROCA1Q8NCQ7 364 aaPredicted RBP11.49□□□□□ -0.57
ATG4A-202ENST00000345734 ZNF496Q96IT1 587 aaPredicted RBP11.49□□□□□ -0.57
ATG4A-202ENST00000345734 USP44Q9H0E7 712 aa11.49□□□□□ -0.57
ATG4A-202ENST00000345734 BTG4Q9NY30 223 aa11.49□□□□□ -0.57
ATG4A-202ENST00000345734 USP35Q9P2H5 1018 aa11.49□□□□□ -0.57
ATG4A-202ENST00000345734 ADGRG1Q9Y653 693 aa11.49□□□□□ -0.57
ATG4A-202ENST00000345734 ADCY9O60503 1353 aa11.49□□□□□ -0.57
ATG4A-202ENST00000345734 ONECUT3O60422 494 aaPredicted RBP11.48□□□□□ -0.57
ATG4A-202ENST00000345734 CABP4P57796 275 aa11.48□□□□□ -0.57
ATG4A-202ENST00000345734 DNAAF4Q8WXU2 420 aa11.48□□□□□ -0.57
ATG4A-202ENST00000345734 GOPCQ9HD26 462 aa11.48□□□□□ -0.57
ATG4A-202ENST00000345734 FAM217BQ9NTX9 383 aaPredicted RBP11.48□□□□□ -0.57
ATG4A-202ENST00000345734 PCDH11XQ9BZA7 1347 aa11.48□□□□□ -0.57
ATG4A-202ENST00000345734 PCDH11YQ9BZA8 1340 aa11.48□□□□□ -0.57
ATG4A-202ENST00000345734 GNAI3P08754 354 aa11.48□□□□□ -0.57
ATG4A-202ENST00000345734 SP7Q8TDD2 431 aaPredicted RBP11.48□□□□□ -0.57
ATG4A-202ENST00000345734 PXYLP1Q8TE99 480 aa11.48□□□□□ -0.57
ATG4A-202ENST00000345734 SRCIN1Q9C0H9 1055 aa11.48□□□□□ -0.57
ATG4A-202ENST00000345734 NOP58Q9Y2X3 529 aaKnown RBP11.48□□□□□ -0.57
ATG4A-202ENST00000345734 LRRFIP2Q9Y608 721 aaKnown RBP11.48□□□□□ -0.57
ATG4A-202ENST00000345734 APBB1O00213 710 aa11.47□□□□□ -0.57
ATG4A-202ENST00000345734 BEND3Q5T5X7 828 aa11.47□□□□□ -0.57
ATG4A-202ENST00000345734 DDX54Q8TDD1 881 aaKnown RBP11.47□□□□□ -0.57
ATG4A-202ENST00000345734 COL14A1Q05707 1796 aaKnown RBP11.47□□□□□ -0.57
ATG4A-202ENST00000345734 COL16A1Q07092 1604 aaPredicted RBP11.47□□□□□ -0.57
ATG4A-202ENST00000345734 COL22A1Q8NFW1 1626 aaPredicted RBP11.47□□□□□ -0.57
ATG4A-202ENST00000345734 SMARCA5O60264 1052 aaPredicted RBP11.47□□□□□ -0.57
ATG4A-202ENST00000345734 HOXB3P14651 431 aaPredicted RBP11.47□□□□□ -0.57
ATG4A-202ENST00000345734 SH3D19Q5HYK7 790 aa11.47□□□□□ -0.57
ATG4A-202ENST00000345734 C16orf71Q8IYS4 520 aaPredicted RBP11.47□□□□□ -0.57
ATG4A-202ENST00000345734 TTC5Q8N0Z6 440 aa11.47□□□□□ -0.57
ATG4A-202ENST00000345734 PNMA6EA0A0J9YXQ4 647 aa11.46□□□□□ -0.57
ATG4A-202ENST00000345734 HMMRO75330 724 aa11.46□□□□□ -0.57
ATG4A-202ENST00000345734 DDX21Q9NR30 783 aaKnown RBP eCLIP11.46□□□□□ -0.57
ATG4A-202ENST00000345734 HYPKQ9NX55 129 aa11.46□□□□□ -0.57
ATG4A-202ENST00000345734 MAP3K2Q9Y2U5 619 aa11.46□□□□□ -0.57
ATG4A-202ENST00000345734 PHLPP1O60346 1717 aa11.46□□□□□ -0.57
ATG4A-202ENST00000345734 POTEB2H3BUK9 544 aa11.45□□□□□ -0.58
ATG4A-202ENST00000345734 UBTFL1P0CB47 393 aaPredicted RBP11.45□□□□□ -0.58
ATG4A-202ENST00000345734 AIMP1Q12904 312 aaKnown RBP11.45□□□□□ -0.58
ATG4A-202ENST00000345734 OTUD7AQ8TE49 926 aaPredicted RBP11.45□□□□□ -0.58
ATG4A-202ENST00000345734 USP16Q9Y5T5 823 aa11.45□□□□□ -0.58
ATG4A-202ENST00000345734 GLI3P10071 1580 aa11.45□□□□□ -0.58
ATG4A-202ENST00000345734 KAT6BQ8WYB5 2073 aa11.45□□□□□ -0.58
ATG4A-202ENST00000345734 SNRPA1P09661 255 aaKnown RBP11.45□□□□□ -0.58
ATG4A-202ENST00000345734 NBPF7P0C2Y1 421 aaPredicted RBP11.45□□□□□ -0.58
ATG4A-202ENST00000345734 MYL6BP14649 208 aa11.45□□□□□ -0.58
ATG4A-202ENST00000345734 PIP4K2AP48426 406 aaPredicted RBP11.45□□□□□ -0.58
ATG4A-202ENST00000345734 ATP8B2P98198 1209 aa11.45□□□□□ -0.58
ATG4A-202ENST00000345734 KSR2Q6VAB6 950 aa11.45□□□□□ -0.58
ATG4A-202ENST00000345734 PLEKHM2Q8IWE5 1019 aa11.45□□□□□ -0.58
ATG4A-202ENST00000345734 FMNL2Q96PY5 1086 aa11.45□□□□□ -0.58
ATG4A-202ENST00000345734 OATP04181 439 aa11.44□□□□□ -0.58
ATG4A-202ENST00000345734 EXOC6BQ9Y2D4 811 aa11.44□□□□□ -0.58
ATG4A-202ENST00000345734 TOGARAM1Q9Y4F4 1720 aa11.44□□□□□ -0.58
ATG4A-202ENST00000345734 ERVV-2B6SEH9 535 aa11.44□□□□□ -0.58
ATG4A-202ENST00000345734 PIP4K2BP78356 416 aa11.44□□□□□ -0.58
ATG4A-202ENST00000345734 BMP2KLQ5H9B9 411 aa11.44□□□□□ -0.58
ATG4A-202ENST00000345734 UBR2Q8IWV8 1755 aa11.43□□□□□ -0.58
ATG4A-202ENST00000345734 CWF19L2Q2TBE0 894 aaKnown RBP11.43□□□□□ -0.58
ATG4A-202ENST00000345734 LAMB4A4D0S4 1761 aa11.43□□□□□ -0.58
ATG4A-202ENST00000345734 ADAMTS2O95450 1211 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms