RNA–Protein interactions for RNA: ENST00000344114.8

HERPUD1-202, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 1 (best) BASIC

Gene HERPUD1, Length 1,388 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-202ENST00000344114 CLEC4GQ6UXB4 293 aa17.27■□□□□ 0.35
HERPUD1-202ENST00000344114 NPM2Q86SE8 214 aaKnown RBP17.27■□□□□ 0.35
HERPUD1-202ENST00000344114 IFT57Q9NWB7 429 aa17.27■□□□□ 0.35
HERPUD1-202ENST00000344114 KLRG2A4D1S0 409 aaPredicted RBP17.26■□□□□ 0.35
HERPUD1-202ENST00000344114 PLIN1O60240 522 aa17.26■□□□□ 0.35
HERPUD1-202ENST00000344114 TMEM88BA6NKF7 163 aa17.25■□□□□ 0.35
HERPUD1-202ENST00000344114 KCNQ3O43525 872 aa17.25■□□□□ 0.35
HERPUD1-202ENST00000344114 NPR1P16066 1061 aa17.25■□□□□ 0.35
HERPUD1-202ENST00000344114 VEGFBP49765 207 aa17.25■□□□□ 0.35
HERPUD1-202ENST00000344114 RARSP54136 660 aaKnown RBP17.25■□□□□ 0.35
HERPUD1-202ENST00000344114 FKBP4Q02790 459 aaKnown RBP eCLIP17.25■□□□□ 0.35
HERPUD1-202ENST00000344114 EXOC6Q8TAG9 804 aa17.25■□□□□ 0.35
HERPUD1-202ENST00000344114 TSR2Q969E8 191 aaKnown RBP17.25■□□□□ 0.35
HERPUD1-202ENST00000344114 USP16Q9Y5T5 823 aa17.25■□□□□ 0.35
HERPUD1-202ENST00000344114 KDM3BQ7LBC6 1761 aa17.24■□□□□ 0.35
HERPUD1-202ENST00000344114 ZNF541Q9H0D2 1346 aa17.24■□□□□ 0.35
HERPUD1-202ENST00000344114 BTBD11A6QL63 1104 aa17.24■□□□□ 0.35
HERPUD1-202ENST00000344114 CTCFP49711 727 aaPredicted RBP17.24■□□□□ 0.35
HERPUD1-202ENST00000344114 NBPF5PQ86XG9 351 aaPredicted RBP17.24■□□□□ 0.35
HERPUD1-202ENST00000344114 RGL2O15211 777 aa17.23■□□□□ 0.35
HERPUD1-202ENST00000344114 BCAR3O75815 825 aa17.23■□□□□ 0.35
HERPUD1-202ENST00000344114 ZNF853P0CG23 659 aa17.23■□□□□ 0.35
HERPUD1-202ENST00000344114 EXOSC9Q06265 439 aaKnown RBP17.23■□□□□ 0.35
HERPUD1-202ENST00000344114 CCDC136Q96JN2 1154 aa17.23■□□□□ 0.35
HERPUD1-202ENST00000344114 WBP1LQ9NX94 342 aa17.23■□□□□ 0.35
HERPUD1-202ENST00000344114 HACL1Q9UJ83 578 aa17.23■□□□□ 0.35
HERPUD1-202ENST00000344114 SNED1Q8TER0 1413 aa17.22■□□□□ 0.35
HERPUD1-202ENST00000344114 PIP4K2AP48426 406 aaPredicted RBP17.22■□□□□ 0.35
HERPUD1-202ENST00000344114 ZNF428Q96B54 188 aa17.22■□□□□ 0.35
HERPUD1-202ENST00000344114 AIDAQ96BJ3 306 aa17.22■□□□□ 0.35
HERPUD1-202ENST00000344114 CRBNQ96SW2 442 aa17.22■□□□□ 0.35
HERPUD1-202ENST00000344114 ZNF652Q9Y2D9 606 aa17.22■□□□□ 0.35
HERPUD1-202ENST00000344114 THSD7BQ9C0I4 1608 aa17.21■□□□□ 0.35
HERPUD1-202ENST00000344114 LAMB4A4D0S4 1761 aa17.21■□□□□ 0.35
HERPUD1-202ENST00000344114 PRAMEF22A3QJZ6 481 aa17.21■□□□□ 0.35
HERPUD1-202ENST00000344114 RASSF10A6NK89 507 aa17.21■□□□□ 0.35
HERPUD1-202ENST00000344114 EPHX2P34913 555 aa17.21■□□□□ 0.35
HERPUD1-202ENST00000344114 PDE3AQ14432 1141 aa17.21■□□□□ 0.35
HERPUD1-202ENST00000344114 EAPPQ56P03 285 aaPredicted RBP17.21■□□□□ 0.35
HERPUD1-202ENST00000344114 B4GALNT3Q6L9W6 998 aa17.21■□□□□ 0.35
HERPUD1-202ENST00000344114 CFAP44Q96MT7 982 aa17.21■□□□□ 0.35
HERPUD1-202ENST00000344114 ZNF277Q9NRM2 450 aaPredicted RBP17.21■□□□□ 0.35
HERPUD1-202ENST00000344114 FZD9O00144 591 aa17.2■□□□□ 0.34
HERPUD1-202ENST00000344114 HTATSF1O43719 755 aaKnown RBP17.2■□□□□ 0.34
HERPUD1-202ENST00000344114 RTKN2Q8IZC4 609 aa17.2■□□□□ 0.34
HERPUD1-202ENST00000344114 SNRPA1P09661 255 aaKnown RBP17.19■□□□□ 0.34
HERPUD1-202ENST00000344114 OLFM4Q6UX06 510 aa17.19■□□□□ 0.34
HERPUD1-202ENST00000344114 TPTE2Q6XPS3 522 aa17.19■□□□□ 0.34
HERPUD1-202ENST00000344114 PNMA8AQ86V59 439 aaPredicted RBP17.19■□□□□ 0.34
HERPUD1-202ENST00000344114 THUMPD2Q9BTF0 503 aaKnown RBP17.19■□□□□ 0.34
HERPUD1-202ENST00000344114 LTBP1Q14766 1721 aa17.19■□□□□ 0.34
HERPUD1-202ENST00000344114 IARSP41252 1262 aaKnown RBP17.18■□□□□ 0.34
HERPUD1-202ENST00000344114 LBX1P52954 281 aa17.18■□□□□ 0.34
HERPUD1-202ENST00000344114 ALDH1L2Q3SY69 923 aa17.18■□□□□ 0.34
HERPUD1-202ENST00000344114 C20orf194Q5TEA3 1177 aa17.18■□□□□ 0.34
HERPUD1-202ENST00000344114 RTF1Q92541 710 aaKnown RBP17.18■□□□□ 0.34
HERPUD1-202ENST00000344114 NIP7Q9Y221 180 aaKnown RBP eCLIP17.18■□□□□ 0.34
HERPUD1-202ENST00000344114 CLEC11AQ9Y240 323 aa17.18■□□□□ 0.34
HERPUD1-202ENST00000344114 NUP98P52948 1817 aa17.17■□□□□ 0.34
HERPUD1-202ENST00000344114 NBPF26B4DH59 902 aa17.17■□□□□ 0.34
HERPUD1-202ENST00000344114 ALDH1B1P30837 517 aa17.17■□□□□ 0.34
HERPUD1-202ENST00000344114 DEFB115Q30KQ5 88 aa17.17■□□□□ 0.34
HERPUD1-202ENST00000344114 NBPF10Q6P3W6 841 aaKnown RBP17.17■□□□□ 0.34
HERPUD1-202ENST00000344114 CNTROBQ8N137 903 aa17.17■□□□□ 0.34
HERPUD1-202ENST00000344114 GPC2Q8N158 579 aa17.17■□□□□ 0.34
HERPUD1-202ENST00000344114 NBPF15Q8N660 670 aa17.17■□□□□ 0.34
HERPUD1-202ENST00000344114 MBIPQ9NS73 344 aa17.17■□□□□ 0.34
HERPUD1-202ENST00000344114 LAS1LQ9Y4W2 734 aaKnown RBP17.17■□□□□ 0.34
HERPUD1-202ENST00000344114 KIF16BQ96L93 1317 aa17.17■□□□□ 0.34
HERPUD1-202ENST00000344114 COL4A5P29400 1685 aa17.17■□□□□ 0.34
HERPUD1-202ENST00000344114 HSPA8P11142 646 aaKnown RBP17.16■□□□□ 0.34
HERPUD1-202ENST00000344114 MS4A1P11836 297 aa17.16■□□□□ 0.34
HERPUD1-202ENST00000344114 MAP1SQ66K74 1059 aaPredicted RBP17.16■□□□□ 0.34
HERPUD1-202ENST00000344114 SYNE4Q8N205 404 aa17.16■□□□□ 0.34
HERPUD1-202ENST00000344114 PSMD1Q99460 953 aa17.16■□□□□ 0.34
HERPUD1-202ENST00000344114 TRPM7Q96QT4 1865 aa17.16■□□□□ 0.34
HERPUD1-202ENST00000344114 WDR33Q9C0J8 1336 aaKnown RBP17.16■□□□□ 0.34
HERPUD1-202ENST00000344114 SMC4Q9NTJ3 1288 aa17.15■□□□□ 0.34
HERPUD1-202ENST00000344114 MAP2K1Q02750 393 aaPredicted RBP17.15■□□□□ 0.34
HERPUD1-202ENST00000344114 DCTN1Q14203 1278 aa17.15■□□□□ 0.34
HERPUD1-202ENST00000344114 HLFQ16534 295 aa17.15■□□□□ 0.34
HERPUD1-202ENST00000344114 CRY2Q49AN0 593 aa17.15■□□□□ 0.34
HERPUD1-202ENST00000344114 BRPF1P55201 1214 aaPredicted RBP17.14■□□□□ 0.33
HERPUD1-202ENST00000344114 AAMPQ13685 434 aa17.14■□□□□ 0.33
HERPUD1-202ENST00000344114 MCM10Q7L590 875 aa17.14■□□□□ 0.33
HERPUD1-202ENST00000344114 FRAT1Q92837 279 aaPredicted RBP17.14■□□□□ 0.33
HERPUD1-202ENST00000344114 RIC1Q4ADV7 1423 aa17.13■□□□□ 0.33
HERPUD1-202ENST00000344114 ABCC12Q96J65 1359 aa17.13■□□□□ 0.33
HERPUD1-202ENST00000344114 FAM177BA6PVY3 158 aa17.13■□□□□ 0.33
HERPUD1-202ENST00000344114 CHL1O00533 1208 aa17.13■□□□□ 0.33
HERPUD1-202ENST00000344114 ZKSCAN2Q63HK3 967 aa17.13■□□□□ 0.33
HERPUD1-202ENST00000344114 JDP2Q8WYK2 163 aa17.13■□□□□ 0.33
HERPUD1-202ENST00000344114 SSH1Q8WYL5 1049 aa17.13■□□□□ 0.33
HERPUD1-202ENST00000344114 BCL2L13Q9BXK5 485 aa17.13■□□□□ 0.33
HERPUD1-202ENST00000344114 DDX21Q9NR30 783 aaKnown RBP eCLIP17.13■□□□□ 0.33
HERPUD1-202ENST00000344114 CC2D2BQ6DHV5 1058 aa17.12■□□□□ 0.33
HERPUD1-202ENST00000344114 ABHD8Q96I13 439 aa17.12■□□□□ 0.33
HERPUD1-202ENST00000344114 VAMP4O75379 141 aa17.11■□□□□ 0.33
HERPUD1-202ENST00000344114 EIF6P56537 245 aaKnown RBP17.11■□□□□ 0.33
HERPUD1-202ENST00000344114 TWISTNBQ3B726 338 aaPredicted RBP17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms