RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 ADCK5Q3MIX3 580 aa23.35■■□□□ 1.33
COL9A3-201ENST00000343916 NSFL1CQ9UNZ2 370 aaKnown RBP23.35■■□□□ 1.33
COL9A3-201ENST00000343916 ZSCAN23Q3MJ62 389 aa23.35■■□□□ 1.33
COL9A3-201ENST00000343916 TOM1L2Q6ZVM7 507 aa23.35■■□□□ 1.33
COL9A3-201ENST00000343916 PKD1L3Q7Z443 1732 aa23.34■■□□□ 1.33
COL9A3-201ENST00000343916 RUFY3Q7L099 469 aa23.34■■□□□ 1.33
COL9A3-201ENST00000343916 DDX54Q8TDD1 881 aaKnown RBP23.34■■□□□ 1.33
COL9A3-201ENST00000343916 ABCC6O95255 1503 aa23.34■■□□□ 1.33
COL9A3-201ENST00000343916 NMIQ13287 307 aaPredicted RBP23.33■■□□□ 1.33
COL9A3-201ENST00000343916 A0A087WZG4 1122 aa23.33■■□□□ 1.32
COL9A3-201ENST00000343916 DTNBO60941 627 aa23.33■■□□□ 1.32
COL9A3-201ENST00000343916 EDC3Q96F86 508 aaKnown RBP23.32■■□□□ 1.32
COL9A3-201ENST00000343916 PTPN12Q05209 780 aaKnown RBP23.32■■□□□ 1.32
COL9A3-201ENST00000343916 JAKMIP1Q96N16 626 aaKnown RBP23.32■■□□□ 1.32
COL9A3-201ENST00000343916 CCDC171Q6TFL3 1326 aa23.31■■□□□ 1.32
COL9A3-201ENST00000343916 RFX5P48382 616 aaPredicted RBP23.31■■□□□ 1.32
COL9A3-201ENST00000343916 FSD1Q9BTV5 496 aa23.31■■□□□ 1.32
COL9A3-201ENST00000343916 A0A0D9SFI3 127 aa23.31■■□□□ 1.32
COL9A3-201ENST00000343916 NBPF26B4DH59 902 aa23.31■■□□□ 1.32
COL9A3-201ENST00000343916 LARGE1O95461 756 aa23.31■■□□□ 1.32
COL9A3-201ENST00000343916 NBPF14Q5TI25 921 aa23.31■■□□□ 1.32
COL9A3-201ENST00000343916 NBPF10Q6P3W6 841 aaKnown RBP23.31■■□□□ 1.32
COL9A3-201ENST00000343916 NBPF15Q8N660 670 aa23.31■■□□□ 1.32
COL9A3-201ENST00000343916 ZCRB1Q8TBF4 217 aaKnown RBP23.31■■□□□ 1.32
COL9A3-201ENST00000343916 LIMCH1Q9UPQ0 1083 aa23.31■■□□□ 1.32
COL9A3-201ENST00000343916 WDR17Q8IZU2 1322 aa23.3■■□□□ 1.32
COL9A3-201ENST00000343916 ZNF445P59923 1031 aa23.3■■□□□ 1.32
COL9A3-201ENST00000343916 TFCP2Q12800 502 aa23.3■■□□□ 1.32
COL9A3-201ENST00000343916 NECTIN1Q15223 517 aa23.3■■□□□ 1.32
COL9A3-201ENST00000343916 GDPD2Q9HCC8 539 aa23.3■■□□□ 1.32
COL9A3-201ENST00000343916 COPRSQ9NQ92 184 aa23.3■■□□□ 1.32
COL9A3-201ENST00000343916 TMEM63CQ9P1W3 806 aa23.3■■□□□ 1.32
COL9A3-201ENST00000343916 RBM8AQ9Y5S9 174 aaKnown RBP23.3■■□□□ 1.32
COL9A3-201ENST00000343916 NDUFB9Q9Y6M9 179 aa23.3■■□□□ 1.32
COL9A3-201ENST00000343916 AFDNP55196 1824 aaKnown RBP23.29■■□□□ 1.32
COL9A3-201ENST00000343916 GLI3P10071 1580 aa23.29■■□□□ 1.32
COL9A3-201ENST00000343916 PLBD2Q8NHP8 589 aa23.29■■□□□ 1.32
COL9A3-201ENST00000343916 NASPP49321 788 aaPredicted RBP23.28■■□□□ 1.32
COL9A3-201ENST00000343916 COL9A3Q14050 684 aaPredicted RBP23.28■■□□□ 1.32
COL9A3-201ENST00000343916 DBNLQ9UJU6 430 aaKnown RBP23.28■■□□□ 1.32
COL9A3-201ENST00000343916 ARFGEF2Q9Y6D5 1785 aa23.28■■□□□ 1.32
COL9A3-201ENST00000343916 RPAP1Q9BWH6 1393 aaPredicted RBP23.28■■□□□ 1.32
COL9A3-201ENST00000343916 KCNJ4P48050 445 aa23.28■■□□□ 1.32
COL9A3-201ENST00000343916 TTLL7Q6ZT98 887 aa23.28■■□□□ 1.32
COL9A3-201ENST00000343916 PCDH11XQ9BZA7 1347 aa23.28■■□□□ 1.32
COL9A3-201ENST00000343916 PCDH11YQ9BZA8 1340 aa23.28■■□□□ 1.32
COL9A3-201ENST00000343916 RABL6Q3YEC7 729 aaPredicted RBP23.27■■□□□ 1.32
COL9A3-201ENST00000343916 A1BGP04217 495 aa23.27■■□□□ 1.32
COL9A3-201ENST00000343916 PDRG1Q9NUG6 133 aa23.27■■□□□ 1.32
COL9A3-201ENST00000343916 PLEKHG2Q9H7P9 1386 aa23.27■■□□□ 1.32
COL9A3-201ENST00000343916 PRIM1P49642 420 aaKnown RBP23.26■■□□□ 1.31
COL9A3-201ENST00000343916 CASP7P55210 303 aa23.26■■□□□ 1.31
COL9A3-201ENST00000343916 TNNI3KQ59H18 835 aa23.26■■□□□ 1.31
COL9A3-201ENST00000343916 CREB3L3Q68CJ9 461 aa23.26■■□□□ 1.31
COL9A3-201ENST00000343916 FPGT-TNNI3KV9GXZ4 949 aa23.26■■□□□ 1.31
COL9A3-201ENST00000343916 MAP4K1Q92918 833 aa23.26■■□□□ 1.31
COL9A3-201ENST00000343916 STRN4Q9NRL3 753 aa23.26■■□□□ 1.31
COL9A3-201ENST00000343916 SLAIN2Q9P270 581 aa23.26■■□□□ 1.31
COL9A3-201ENST00000343916 CHMP3Q9Y3E7 222 aa23.26■■□□□ 1.31
COL9A3-201ENST00000343916 WDR33Q9C0J8 1336 aaKnown RBP23.26■■□□□ 1.31
COL9A3-201ENST00000343916 HIP1O00291 1037 aa23.25■■□□□ 1.31
COL9A3-201ENST00000343916 LMBR1LQ6UX01 489 aa23.25■■□□□ 1.31
COL9A3-201ENST00000343916 ZNF589Q86UQ0 364 aaPredicted RBP23.25■■□□□ 1.31
COL9A3-201ENST00000343916 ZSWIM6Q9HCJ5 1215 aa23.25■■□□□ 1.31
COL9A3-201ENST00000343916 ZKSCAN1P17029 563 aaPredicted RBP23.25■■□□□ 1.31
COL9A3-201ENST00000343916 CCDC83Q8IWF9 413 aa23.25■■□□□ 1.31
COL9A3-201ENST00000343916 KCNB2Q92953 911 aa23.25■■□□□ 1.31
COL9A3-201ENST00000343916 CCDC9Q9Y3X0 531 aaKnown RBP23.25■■□□□ 1.31
COL9A3-201ENST00000343916 CYP46A1Q9Y6A2 500 aa23.25■■□□□ 1.31
COL9A3-201ENST00000343916 CHGBP05060 677 aa23.24■■□□□ 1.31
COL9A3-201ENST00000343916 NAP1L5Q96NT1 182 aaPredicted RBP23.24■■□□□ 1.31
COL9A3-201ENST00000343916 COL5A2P05997 1499 aaPredicted RBP23.24■■□□□ 1.31
COL9A3-201ENST00000343916 SYCE3A1L190 88 aa23.24■■□□□ 1.31
COL9A3-201ENST00000343916 CLCN1P35523 988 aa23.24■■□□□ 1.31
COL9A3-201ENST00000343916 VPS53Q5VIR6 699 aa23.24■■□□□ 1.31
COL9A3-201ENST00000343916 TAF6LQ9Y6J9 622 aa23.24■■□□□ 1.31
COL9A3-201ENST00000343916 DBNDD2Q9BQY9 259 aa23.23■■□□□ 1.31
COL9A3-201ENST00000343916 SOS2Q07890 1332 aaPredicted RBP23.23■■□□□ 1.31
COL9A3-201ENST00000343916 SLC27A2O14975 620 aa23.23■■□□□ 1.31
COL9A3-201ENST00000343916 RBSNQ9H1K0 784 aa23.23■■□□□ 1.31
COL9A3-201ENST00000343916 ZBTB3Q9H5J0 574 aa23.23■■□□□ 1.31
COL9A3-201ENST00000343916 SMC3Q9UQE7 1217 aa23.23■■□□□ 1.31
COL9A3-201ENST00000343916 ZSCAN21Q9Y5A6 473 aaPredicted RBP23.23■■□□□ 1.31
COL9A3-201ENST00000343916 TCHHQ07283 1943 aa23.23■■□□□ 1.31
COL9A3-201ENST00000343916 SYT1P21579 422 aa23.22■■□□□ 1.31
COL9A3-201ENST00000343916 TM6SF1Q9BZW5 370 aa23.22■■□□□ 1.31
COL9A3-201ENST00000343916 LAMB4A4D0S4 1761 aa23.22■■□□□ 1.31
COL9A3-201ENST00000343916 PARP4Q9UKK3 1724 aaKnown RBP23.22■■□□□ 1.31
COL9A3-201ENST00000343916 GADD45BO75293 160 aaPredicted RBP23.22■■□□□ 1.31
COL9A3-201ENST00000343916 IL2RBP14784 551 aa23.22■■□□□ 1.31
COL9A3-201ENST00000343916 UBE2Q2Q8WVN8 375 aa23.22■■□□□ 1.31
COL9A3-201ENST00000343916 TCEANC2Q96MN5 208 aa23.22■■□□□ 1.31
COL9A3-201ENST00000343916 DNAJC2Q99543 621 aaKnown RBP23.22■■□□□ 1.31
COL9A3-201ENST00000343916 FOXO4P98177 505 aa23.21■■□□□ 1.31
COL9A3-201ENST00000343916 ERVV-2B6SEH9 535 aa23.21■■□□□ 1.31
COL9A3-201ENST00000343916 STX6O43752 255 aa23.21■■□□□ 1.31
COL9A3-201ENST00000343916 ATP5JP18859 108 aa23.21■■□□□ 1.31
COL9A3-201ENST00000343916 TRIM44Q96DX7 344 aaPredicted RBP23.21■■□□□ 1.31
COL9A3-201ENST00000343916 SNRKQ9NRH2 765 aa23.21■■□□□ 1.31
COL9A3-201ENST00000343916 MED23Q9ULK4 1368 aa23.21■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms