RNA–Protein interactions for RNA: ENST00000341307.6

RTN3-203, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,524 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-203ENST00000341307 FAM184AQ8NB25 1140 aa14.12□□□□□ -0.15
RTN3-203ENST00000341307 ANKRD24Q8TF21 1146 aa14.12□□□□□ -0.15
RTN3-203ENST00000341307 NGLY1Q96IV0 654 aa14.12□□□□□ -0.15
RTN3-203ENST00000341307 CEP83Q9Y592 693 aa14.12□□□□□ -0.15
RTN3-203ENST00000341307 SPATA31A6Q5VVP1 1343 aa14.12□□□□□ -0.15
RTN3-203ENST00000341307 EP400Q96L91 3159 aa14.12□□□□□ -0.15
RTN3-203ENST00000341307 CASQ1P31415 396 aa14.12□□□□□ -0.15
RTN3-203ENST00000341307 MUM1L1Q5H9M0 696 aa14.12□□□□□ -0.15
RTN3-203ENST00000341307 TMED8Q6PL24 325 aaPredicted RBP14.12□□□□□ -0.15
RTN3-203ENST00000341307 ZGPATQ8N5A5 531 aaKnown RBP14.12□□□□□ -0.15
RTN3-203ENST00000341307 F6X3S4 739 aa14.11□□□□□ -0.15
RTN3-203ENST00000341307 BRMS1Q9HCU9 246 aa14.11□□□□□ -0.15
RTN3-203ENST00000341307 ATG3Q9NT62 314 aa14.11□□□□□ -0.15
RTN3-203ENST00000341307 LCMT1Q9UIC8 334 aa14.11□□□□□ -0.15
RTN3-203ENST00000341307 SLIT3O75094 1523 aa14.11□□□□□ -0.15
RTN3-203ENST00000341307 MYO1CO00159 1063 aa14.11□□□□□ -0.15
RTN3-203ENST00000341307 HTATSF1O43719 755 aaKnown RBP14.11□□□□□ -0.15
RTN3-203ENST00000341307 TSGA10IPQ3SY00 556 aa14.11□□□□□ -0.15
RTN3-203ENST00000341307 C10orf67Q8IYJ2 551 aa14.11□□□□□ -0.15
RTN3-203ENST00000341307 LNPKQ9C0E8 428 aa14.11□□□□□ -0.15
RTN3-203ENST00000341307 LRRC37A3O60309 1634 aa14.1□□□□□ -0.15
RTN3-203ENST00000341307 CCDC172P0C7W6 258 aa14.1□□□□□ -0.15
RTN3-203ENST00000341307 GRIPAP1Q4V328 841 aa14.1□□□□□ -0.15
RTN3-203ENST00000341307 FBXO38Q6PIJ6 1188 aa14.1□□□□□ -0.15
RTN3-203ENST00000341307 MPRIPQ6WCQ1 1025 aa14.1□□□□□ -0.15
RTN3-203ENST00000341307 CWC22Q9HCG8 908 aaKnown RBP14.1□□□□□ -0.15
RTN3-203ENST00000341307 RAD50Q92878 1312 aa14.1□□□□□ -0.15
RTN3-203ENST00000341307 AP5Z1O43299 807 aa14.09□□□□□ -0.15
RTN3-203ENST00000341307 TAF7Q15545 349 aaPredicted RBP14.09□□□□□ -0.15
RTN3-203ENST00000341307 BMP2KLQ5H9B9 411 aa14.09□□□□□ -0.15
RTN3-203ENST00000341307 SLC4A10Q6U841 1118 aa14.09□□□□□ -0.15
RTN3-203ENST00000341307 TBC1D9Q6ZT07 1266 aa14.09□□□□□ -0.15
RTN3-203ENST00000341307 EGFL6Q8IUX8 553 aa14.09□□□□□ -0.15
RTN3-203ENST00000341307 TOMM22Q9NS69 142 aa14.09□□□□□ -0.15
RTN3-203ENST00000341307 ZNF530Q6P9A1 599 aaPredicted RBP14.09□□□□□ -0.15
RTN3-203ENST00000341307 NEK11Q8NG66 645 aa14.09□□□□□ -0.15
RTN3-203ENST00000341307 PRDM11Q9NQV5 511 aa14.09□□□□□ -0.15
RTN3-203ENST00000341307 AFF2P51816 1311 aa14.09□□□□□ -0.15
RTN3-203ENST00000341307 RGPD5Q99666 1765 aa14.08□□□□□ -0.15
RTN3-203ENST00000341307 KDM4AO75164 1064 aa14.08□□□□□ -0.15
RTN3-203ENST00000341307 INTS3Q68E01 1043 aaKnown RBP14.08□□□□□ -0.15
RTN3-203ENST00000341307 KCNQ3O43525 872 aa14.08□□□□□ -0.16
RTN3-203ENST00000341307 ANKRD45Q5TZF3 282 aa14.08□□□□□ -0.16
RTN3-203ENST00000341307 C16orf45Q96MC5 204 aaPredicted RBP14.08□□□□□ -0.16
RTN3-203ENST00000341307 BTG4Q9NY30 223 aa14.08□□□□□ -0.16
RTN3-203ENST00000341307 PHRF1Q9P1Y6 1649 aaKnown RBP14.08□□□□□ -0.16
RTN3-203ENST00000341307 NUCB1Q02818 461 aa14.07□□□□□ -0.16
RTN3-203ENST00000341307 GPATCH11Q8N954 259 aa14.07□□□□□ -0.16
RTN3-203ENST00000341307 MEIS3Q99687 375 aa14.07□□□□□ -0.16
RTN3-203ENST00000341307 PTPRCP08575 1304 aa14.07□□□□□ -0.16
RTN3-203ENST00000341307 RABEP1Q15276 862 aa14.07□□□□□ -0.16
RTN3-203ENST00000341307 POTEAQ6S8J7 498 aa14.07□□□□□ -0.16
RTN3-203ENST00000341307 CCDC112Q8NEF3 446 aa14.07□□□□□ -0.16
RTN3-203ENST00000341307 SYAP1Q96A49 352 aaPredicted RBP14.07□□□□□ -0.16
RTN3-203ENST00000341307 HCLS1P14317 486 aaPredicted RBP14.06□□□□□ -0.16
RTN3-203ENST00000341307 HSP90B1P14625 803 aaKnown RBP14.06□□□□□ -0.16
RTN3-203ENST00000341307 CHD1LQ86WJ1 897 aa14.06□□□□□ -0.16
RTN3-203ENST00000341307 STRN4Q9NRL3 753 aa14.06□□□□□ -0.16
RTN3-203ENST00000341307 CEMIPQ8WUJ3 1361 aa14.06□□□□□ -0.16
RTN3-203ENST00000341307 FOXD4L5Q5VV16 416 aaPredicted RBP14.06□□□□□ -0.16
RTN3-203ENST00000341307 FOXD4L4Q8WXT5 416 aaPredicted RBP14.06□□□□□ -0.16
RTN3-203ENST00000341307 STK31Q9BXU1 1019 aa14.06□□□□□ -0.16
RTN3-203ENST00000341307 COL22A1Q8NFW1 1626 aaPredicted RBP14.06□□□□□ -0.16
RTN3-203ENST00000341307 TPM3P06753 285 aa14.05□□□□□ -0.16
RTN3-203ENST00000341307 TNNT1P13805 278 aa14.05□□□□□ -0.16
RTN3-203ENST00000341307 PLEKHO1Q53GL0 409 aaPredicted RBP14.05□□□□□ -0.16
RTN3-203ENST00000341307 KRBA2Q6ZNG9 492 aa14.05□□□□□ -0.16
RTN3-203ENST00000341307 USP21Q9UK80 565 aa14.05□□□□□ -0.16
RTN3-203ENST00000341307 PAXBP1Q9Y5B6 917 aa14.05□□□□□ -0.16
RTN3-203ENST00000341307 ERBB3P21860 1342 aa14.05□□□□□ -0.16
RTN3-203ENST00000341307 PHF14O94880 888 aa14.05□□□□□ -0.16
RTN3-203ENST00000341307 EIF2S2P20042 333 aaKnown RBP14.05□□□□□ -0.16
RTN3-203ENST00000341307 GTF3C6Q969F1 213 aa14.05□□□□□ -0.16
RTN3-203ENST00000341307 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.05□□□□□ -0.16
RTN3-203ENST00000341307 V9GYY5 206 aaPredicted RBP14.05□□□□□ -0.16
RTN3-203ENST00000341307 FLIIQ13045 1269 aa14.04□□□□□ -0.16
RTN3-203ENST00000341307 CCDC30Q5VVM6 783 aa14.04□□□□□ -0.16
RTN3-203ENST00000341307 SPC24Q8NBT2 197 aa14.04□□□□□ -0.16
RTN3-203ENST00000341307 NLRP2Q9NX02 1062 aa14.04□□□□□ -0.16
RTN3-203ENST00000341307 JRKLQ9Y4A0 524 aa14.04□□□□□ -0.16
RTN3-203ENST00000341307 GOLGA6L6A8MZA4 724 aa14.04□□□□□ -0.16
RTN3-203ENST00000341307 GADD45BO75293 160 aaPredicted RBP14.04□□□□□ -0.16
RTN3-203ENST00000341307 SLFNL1Q499Z3 407 aa14.04□□□□□ -0.16
RTN3-203ENST00000341307 AKAP4Q5JQC9 854 aa14.04□□□□□ -0.16
RTN3-203ENST00000341307 DRC1Q96MC2 740 aa14.04□□□□□ -0.16
RTN3-203ENST00000341307 ZNF215Q9UL58 517 aaPredicted RBP14.04□□□□□ -0.16
RTN3-203ENST00000341307 ABCA3Q99758 1704 aa14.04□□□□□ -0.16
RTN3-203ENST00000341307 CRYBG1Q9Y4K1 1723 aa14.03□□□□□ -0.16
RTN3-203ENST00000341307 TEFQ10587 303 aa14.03□□□□□ -0.16
RTN3-203ENST00000341307 TXLNBQ8N3L3 684 aa14.03□□□□□ -0.16
RTN3-203ENST00000341307 PHAXQ9H814 394 aaKnown RBP14.03□□□□□ -0.16
RTN3-203ENST00000341307 BCL9LQ86UU0 1499 aa14.03□□□□□ -0.16
RTN3-203ENST00000341307 SATB1Q01826 763 aa14.03□□□□□ -0.16
RTN3-203ENST00000341307 C1orf141Q5JVX7 400 aa14.03□□□□□ -0.16
RTN3-203ENST00000341307 HDGFL1Q5TGJ6 251 aa14.03□□□□□ -0.16
RTN3-203ENST00000341307 GCC1Q96CN9 775 aa14.03□□□□□ -0.16
RTN3-203ENST00000341307 DONSONQ9NYP3 566 aa14.03□□□□□ -0.16
RTN3-203ENST00000341307 FHOD1Q9Y613 1164 aa14.03□□□□□ -0.16
RTN3-203ENST00000341307 FAM208AQ9UK61 1670 aaKnown RBP14.03□□□□□ -0.16
RTN3-203ENST00000341307 ATP10DQ9P241 1426 aa14.02□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms