RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 TMEM57Q8N5G2 664 aa28.06■■■□□ 2.08
SDC3-202ENST00000339394 PXDNLA1KZ92 1463 aa28.05■■■□□ 2.08
SDC3-202ENST00000339394 ALDH1L1O75891 902 aa28.05■■■□□ 2.08
SDC3-202ENST00000339394 SERPINB2P05120 415 aa28.05■■■□□ 2.08
SDC3-202ENST00000339394 GCKRQ14397 625 aa28.05■■■□□ 2.08
SDC3-202ENST00000339394 PARP3Q9Y6F1 533 aa28.05■■■□□ 2.08
SDC3-202ENST00000339394 PDE3AQ14432 1141 aa28.04■■■□□ 2.08
SDC3-202ENST00000339394 PPP1R42Q7Z4L9 355 aa28.04■■■□□ 2.08
SDC3-202ENST00000339394 NBPF5PQ86XG9 351 aaPredicted RBP28.04■■■□□ 2.08
SDC3-202ENST00000339394 SGIP1Q9BQI5 828 aa28.03■■■□□ 2.08
SDC3-202ENST00000339394 UTP14AQ9BVJ6 771 aaKnown RBP28.03■■■□□ 2.08
SDC3-202ENST00000339394 TRMT112Q9UI30 125 aaKnown RBP28.03■■■□□ 2.08
SDC3-202ENST00000339394 POLD1P28340 1107 aa28.03■■■□□ 2.08
SDC3-202ENST00000339394 PTGER2P43116 358 aa28.03■■■□□ 2.08
SDC3-202ENST00000339394 TPTE2Q6XPS3 522 aa28.03■■■□□ 2.08
SDC3-202ENST00000339394 SPON1Q9HCB6 807 aa28.03■■■□□ 2.08
SDC3-202ENST00000339394 NTSR2O95665 410 aa28.02■■■□□ 2.08
SDC3-202ENST00000339394 NYXQ9GZU5 481 aa28.02■■■□□ 2.08
SDC3-202ENST00000339394 RTL5Q5HYW3 569 aaPredicted RBP28■■■□□ 2.07
SDC3-202ENST00000339394 NUTM1Q86Y26 1132 aa28■■■□□ 2.07
SDC3-202ENST00000339394 CNBD1Q8NA66 436 aa28■■■□□ 2.07
SDC3-202ENST00000339394 ZBTB38Q8NAP3 1195 aaPredicted RBP28■■■□□ 2.07
SDC3-202ENST00000339394 FAM89AQ96GI7 184 aa28■■■□□ 2.07
SDC3-202ENST00000339394 PRR5LQ6MZQ0 368 aa27.99■■■□□ 2.07
SDC3-202ENST00000339394 ITPRIPQ8IWB1 547 aa27.99■■■□□ 2.07
SDC3-202ENST00000339394 NPHP1O15259 732 aa27.99■■■□□ 2.07
SDC3-202ENST00000339394 GTF2E1P29083 439 aaPredicted RBP27.99■■■□□ 2.07
SDC3-202ENST00000339394 SYNE4Q8N205 404 aa27.99■■■□□ 2.07
SDC3-202ENST00000339394 JARID2Q92833 1246 aaPredicted RBP27.99■■■□□ 2.07
SDC3-202ENST00000339394 USP44Q9H0E7 712 aa27.99■■■□□ 2.07
SDC3-202ENST00000339394 C9orf78Q9NZ63 289 aaPredicted RBP27.99■■■□□ 2.07
SDC3-202ENST00000339394 IBTKQ9P2D0 1353 aaPredicted RBP27.98■■■□□ 2.07
SDC3-202ENST00000339394 H7C1W4 665 aa27.98■■■□□ 2.07
SDC3-202ENST00000339394 GRM8O00222 908 aa27.98■■■□□ 2.07
SDC3-202ENST00000339394 PCCAP05165 728 aaPredicted RBP27.98■■■□□ 2.07
SDC3-202ENST00000339394 COG6Q9Y2V7 657 aa27.98■■■□□ 2.07
SDC3-202ENST00000339394 SH3TC1Q8TE82 1336 aa27.97■■■□□ 2.07
SDC3-202ENST00000339394 ANKRD36CQ5JPF3 1778 aa27.97■■■□□ 2.07
SDC3-202ENST00000339394 ERFEQ4G0M1 354 aa27.97■■■□□ 2.07
SDC3-202ENST00000339394 CCDC24Q8N4L8 307 aa27.97■■■□□ 2.07
SDC3-202ENST00000339394 UBE3BQ7Z3V4 1068 aa27.96■■■□□ 2.07
SDC3-202ENST00000339394 NBPF7P0C2Y1 421 aaPredicted RBP27.95■■■□□ 2.07
SDC3-202ENST00000339394 MVPQ14764 893 aaKnown RBP27.95■■■□□ 2.07
SDC3-202ENST00000339394 COL24A1Q17RW2 1714 aa27.95■■■□□ 2.06
SDC3-202ENST00000339394 CASP7P55210 303 aa27.94■■■□□ 2.06
SDC3-202ENST00000339394 UTYO14607 1347 aa27.94■■■□□ 2.06
SDC3-202ENST00000339394 ST5P78524 1137 aa27.94■■■□□ 2.06
SDC3-202ENST00000339394 MEIS3Q99687 375 aa27.94■■■□□ 2.06
SDC3-202ENST00000339394 IRS4O14654 1257 aaPredicted RBP27.92■■■□□ 2.06
SDC3-202ENST00000339394 ZBTB7BO15156 539 aaPredicted RBP27.92■■■□□ 2.06
SDC3-202ENST00000339394 HCLS1P14317 486 aaPredicted RBP27.92■■■□□ 2.06
SDC3-202ENST00000339394 SLC10A5Q5PT55 438 aa27.92■■■□□ 2.06
SDC3-202ENST00000339394 ABCC12Q96J65 1359 aa27.92■■■□□ 2.06
SDC3-202ENST00000339394 DDX19BQ9UMR2 479 aa27.9■■■□□ 2.06
SDC3-202ENST00000339394 CDHR2Q9BYE9 1310 aa27.9■■■□□ 2.06
SDC3-202ENST00000339394 BRIP1Q9BX63 1249 aa27.9■■■□□ 2.06
SDC3-202ENST00000339394 GNAI3P08754 354 aa27.89■■■□□ 2.05
SDC3-202ENST00000339394 NRXN2Q9P2S2 1712 aa27.88■■■□□ 2.05
SDC3-202ENST00000339394 AFDNP55196 1824 aaKnown RBP27.88■■■□□ 2.05
SDC3-202ENST00000339394 UBTFL1P0CB47 393 aaPredicted RBP27.88■■■□□ 2.05
SDC3-202ENST00000339394 SUCLG2Q96I99 432 aa27.87■■■□□ 2.05
SDC3-202ENST00000339394 CRBNQ96SW2 442 aa27.87■■■□□ 2.05
SDC3-202ENST00000339394 HSP90B1P14625 803 aaKnown RBP27.86■■■□□ 2.05
SDC3-202ENST00000339394 KAZALD1Q96I82 304 aa27.86■■■□□ 2.05
SDC3-202ENST00000339394 N4BP2Q86UW6 1770 aaPredicted RBP27.86■■■□□ 2.05
SDC3-202ENST00000339394 C10orf71Q711Q0 1435 aa27.86■■■□□ 2.05
SDC3-202ENST00000339394 PDE8AO60658 829 aa27.86■■■□□ 2.05
SDC3-202ENST00000339394 IRX6P78412 446 aaPredicted RBP27.86■■■□□ 2.05
SDC3-202ENST00000339394 C3orf67Q6ZVT6 689 aa27.86■■■□□ 2.05
SDC3-202ENST00000339394 NLRP3Q96P20 1036 aa27.86■■■□□ 2.05
SDC3-202ENST00000339394 PLA2G12BQ9BX93 195 aa27.86■■■□□ 2.05
SDC3-202ENST00000339394 PPP1R1BQ9UD71 204 aaPredicted RBP27.85■■■□□ 2.05
SDC3-202ENST00000339394 EPHA10Q5JZY3 1008 aa27.84■■■□□ 2.05
SDC3-202ENST00000339394 KLRG2A4D1S0 409 aaPredicted RBP27.83■■■□□ 2.05
SDC3-202ENST00000339394 PDE6BP35913 854 aa27.83■■■□□ 2.05
SDC3-202ENST00000339394 FOXO4P98177 505 aa27.83■■■□□ 2.05
SDC3-202ENST00000339394 CHMP4BQ9H444 224 aaKnown RBP27.83■■■□□ 2.05
SDC3-202ENST00000339394 ZBTB40Q9NUA8 1239 aa27.83■■■□□ 2.05
SDC3-202ENST00000339394 HDAC5Q9UQL6 1122 aa27.83■■■□□ 2.05
SDC3-202ENST00000339394 LRRFIP2Q9Y608 721 aaKnown RBP27.83■■■□□ 2.05
SDC3-202ENST00000339394 RIC1Q4ADV7 1423 aa27.83■■■□□ 2.05
SDC3-202ENST00000339394 GNAI2P04899 355 aa27.82■■■□□ 2.04
SDC3-202ENST00000339394 CD2APQ9Y5K6 639 aa27.82■■■□□ 2.04
SDC3-202ENST00000339394 KLHL34Q8N239 644 aa27.82■■■□□ 2.04
SDC3-202ENST00000339394 BICC1Q9H694 974 aaKnown RBP27.82■■■□□ 2.04
SDC3-202ENST00000339394 CTSWP56202 376 aa27.81■■■□□ 2.04
SDC3-202ENST00000339394 TTLL11Q8NHH1 800 aa27.81■■■□□ 2.04
SDC3-202ENST00000339394 SF3B3Q15393 1217 aaKnown RBP27.8■■■□□ 2.04
SDC3-202ENST00000339394 CRY2Q49AN0 593 aa27.8■■■□□ 2.04
SDC3-202ENST00000339394 C1orf115Q9H7X2 142 aa27.8■■■□□ 2.04
SDC3-202ENST00000339394 CSF1RP07333 972 aa27.79■■■□□ 2.04
SDC3-202ENST00000339394 GOLGB1Q14789 3259 aaKnown RBP27.79■■■□□ 2.04
SDC3-202ENST00000339394 TGFB2P61812 414 aa27.78■■■□□ 2.04
SDC3-202ENST00000339394 LMBR1LQ6UX01 489 aa27.78■■■□□ 2.04
SDC3-202ENST00000339394 EXOC6Q8TAG9 804 aa27.78■■■□□ 2.04
SDC3-202ENST00000339394 CCDC85AQ96PX6 553 aaPredicted RBP27.78■■■□□ 2.04
SDC3-202ENST00000339394 FHDC1Q9C0D6 1143 aaPredicted RBP27.78■■■□□ 2.04
SDC3-202ENST00000339394 RABL6Q3YEC7 729 aaPredicted RBP27.77■■■□□ 2.04
SDC3-202ENST00000339394 C2CD5Q86YS7 1000 aa27.77■■■□□ 2.04
SDC3-202ENST00000339394 ANKRD44Q8N8A2 993 aa27.77■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms