RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 ZNF652Q9Y2D9 606 aa18.56■□□□□ 0.56
CCDC88C-202ENST00000334448 KCNQ4P56696 695 aa18.55■□□□□ 0.56
CCDC88C-202ENST00000334448 NARFQ9UHQ1 456 aa18.55■□□□□ 0.56
CCDC88C-202ENST00000334448 RTCBQ9Y3I0 505 aaKnown RBP18.55■□□□□ 0.56
CCDC88C-202ENST00000334448 UBN2Q6ZU65 1347 aa18.54■□□□□ 0.56
CCDC88C-202ENST00000334448 NUP98P52948 1817 aa18.54■□□□□ 0.56
CCDC88C-202ENST00000334448 GNPATO15228 680 aa18.54■□□□□ 0.56
CCDC88C-202ENST00000334448 RAB11FIP3O75154 756 aa18.54■□□□□ 0.56
CCDC88C-202ENST00000334448 EPHA10Q5JZY3 1008 aa18.54■□□□□ 0.56
CCDC88C-202ENST00000334448 PDE4AP27815 886 aa18.53■□□□□ 0.56
CCDC88C-202ENST00000334448 FOXO4P98177 505 aa18.53■□□□□ 0.56
CCDC88C-202ENST00000334448 TXNRD1Q16881 649 aa18.53■□□□□ 0.56
CCDC88C-202ENST00000334448 HSP90AB4PQ58FF6 505 aa18.53■□□□□ 0.56
CCDC88C-202ENST00000334448 PROM2Q8N271 834 aa18.53■□□□□ 0.56
CCDC88C-202ENST00000334448 AK7Q96M32 723 aa18.53■□□□□ 0.56
CCDC88C-202ENST00000334448 ANKRD45Q5TZF3 282 aa18.52■□□□□ 0.56
CCDC88C-202ENST00000334448 SKAP1Q86WV1 359 aa18.52■□□□□ 0.56
CCDC88C-202ENST00000334448 SSFA2P28290 1259 aa18.51■□□□□ 0.55
CCDC88C-202ENST00000334448 RFX5P48382 616 aaPredicted RBP18.51■□□□□ 0.55
CCDC88C-202ENST00000334448 LNPKQ9C0E8 428 aa18.51■□□□□ 0.55
CCDC88C-202ENST00000334448 COPRSQ9NQ92 184 aa18.51■□□□□ 0.55
CCDC88C-202ENST00000334448 USP42Q9H9J4 1324 aaKnown RBP18.5■□□□□ 0.55
CCDC88C-202ENST00000334448 GPTP24298 496 aa18.5■□□□□ 0.55
CCDC88C-202ENST00000334448 ARXQ96QS3 562 aa18.5■□□□□ 0.55
CCDC88C-202ENST00000334448 BCL2L12Q9HB09 334 aa18.5■□□□□ 0.55
CCDC88C-202ENST00000334448 UBR3Q6ZT12 1888 aa18.5■□□□□ 0.55
CCDC88C-202ENST00000334448 C4AP0C0L4 1744 aa18.49■□□□□ 0.55
CCDC88C-202ENST00000334448 COL24A1Q17RW2 1714 aa18.49■□□□□ 0.55
CCDC88C-202ENST00000334448 APBA3O96018 575 aa18.49■□□□□ 0.55
CCDC88C-202ENST00000334448 CSF1RP07333 972 aa18.49■□□□□ 0.55
CCDC88C-202ENST00000334448 RGS3P49796 1198 aa18.49■□□□□ 0.55
CCDC88C-202ENST00000334448 AMIGO3Q86WK7 504 aa18.49■□□□□ 0.55
CCDC88C-202ENST00000334448 ERC1Q8IUD2 1116 aa18.49■□□□□ 0.55
CCDC88C-202ENST00000334448 ARHGEF1Q92888 912 aaKnown RBP18.49■□□□□ 0.55
CCDC88C-202ENST00000334448 LRRCC1Q9C099 1032 aa18.49■□□□□ 0.55
CCDC88C-202ENST00000334448 EXOC6BQ9Y2D4 811 aa18.49■□□□□ 0.55
CCDC88C-202ENST00000334448 SURF6O75683 361 aaKnown RBP18.48■□□□□ 0.55
CCDC88C-202ENST00000334448 NTSR2O95665 410 aa18.48■□□□□ 0.55
CCDC88C-202ENST00000334448 HSP90B1P14625 803 aaKnown RBP18.48■□□□□ 0.55
CCDC88C-202ENST00000334448 TRAPPC3LQ5T215 181 aa18.48■□□□□ 0.55
CCDC88C-202ENST00000334448 KIF1BPQ96EK5 621 aa18.48■□□□□ 0.55
CCDC88C-202ENST00000334448 SH3TC1Q8TE82 1336 aa18.48■□□□□ 0.55
CCDC88C-202ENST00000334448 SALL3Q9BXA9 1300 aa18.48■□□□□ 0.55
CCDC88C-202ENST00000334448 SUSD4Q5VX71 490 aa18.47■□□□□ 0.55
CCDC88C-202ENST00000334448 LMBR1LQ6UX01 489 aa18.47■□□□□ 0.55
CCDC88C-202ENST00000334448 AKT1S1Q96B36 256 aa18.47■□□□□ 0.55
CCDC88C-202ENST00000334448 FAM89AQ96GI7 184 aa18.47■□□□□ 0.55
CCDC88C-202ENST00000334448 UTP14AQ9BVJ6 771 aaKnown RBP18.47■□□□□ 0.55
CCDC88C-202ENST00000334448 ZBTB47Q9UFB7 747 aaPredicted RBP18.47■□□□□ 0.55
CCDC88C-202ENST00000334448 TRMT112Q9UI30 125 aaKnown RBP18.47■□□□□ 0.55
CCDC88C-202ENST00000334448 NIP7Q9Y221 180 aaKnown RBP eCLIP18.47■□□□□ 0.55
CCDC88C-202ENST00000334448 RTL9Q8NET4 1388 aa18.46■□□□□ 0.55
CCDC88C-202ENST00000334448 LAMB2P55268 1798 aa18.46■□□□□ 0.55
CCDC88C-202ENST00000334448 ZPR1O75312 459 aa18.46■□□□□ 0.55
CCDC88C-202ENST00000334448 PTPN12Q05209 780 aaKnown RBP18.46■□□□□ 0.55
CCDC88C-202ENST00000334448 USPL1Q5W0Q7 1092 aa18.46■□□□□ 0.55
CCDC88C-202ENST00000334448 RHPN1Q8TCX5 695 aa18.46■□□□□ 0.55
CCDC88C-202ENST00000334448 JARID2Q92833 1246 aaPredicted RBP18.46■□□□□ 0.55
CCDC88C-202ENST00000334448 OSBPL3Q9H4L5 887 aa18.46■□□□□ 0.55
CCDC88C-202ENST00000334448 FBXO3Q9UK99 471 aa18.46■□□□□ 0.55
CCDC88C-202ENST00000334448 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.45■□□□□ 0.54
CCDC88C-202ENST00000334448 IRS4O14654 1257 aaPredicted RBP18.45■□□□□ 0.54
CCDC88C-202ENST00000334448 PDE8AO60658 829 aa18.45■□□□□ 0.54
CCDC88C-202ENST00000334448 RFC4P35249 363 aa18.44■□□□□ 0.54
CCDC88C-202ENST00000334448 CTSWP56202 376 aa18.44■□□□□ 0.54
CCDC88C-202ENST00000334448 PLEKHM2Q8IWE5 1019 aa18.44■□□□□ 0.54
CCDC88C-202ENST00000334448 SRP68Q9UHB9 627 aaKnown RBP18.44■□□□□ 0.54
CCDC88C-202ENST00000334448 LRP5O75197 1615 aa18.44■□□□□ 0.54
CCDC88C-202ENST00000334448 AOX1Q06278 1338 aa18.44■□□□□ 0.54
CCDC88C-202ENST00000334448 RIC1Q4ADV7 1423 aa18.43■□□□□ 0.54
CCDC88C-202ENST00000334448 CIAO1O76071 339 aa18.43■□□□□ 0.54
CCDC88C-202ENST00000334448 BMP2KLQ5H9B9 411 aa18.43■□□□□ 0.54
CCDC88C-202ENST00000334448 SLC10A5Q5PT55 438 aa18.43■□□□□ 0.54
CCDC88C-202ENST00000334448 FLAD1Q8NFF5 587 aa18.43■□□□□ 0.54
CCDC88C-202ENST00000334448 CAMKK2Q96RR4 588 aa18.43■□□□□ 0.54
CCDC88C-202ENST00000334448 STAP2Q9UGK3 403 aa18.43■□□□□ 0.54
CCDC88C-202ENST00000334448 PA2G4Q9UQ80 394 aaKnown RBP18.43■□□□□ 0.54
CCDC88C-202ENST00000334448 G3BP1Q13283 466 aaKnown RBP eCLIP18.42■□□□□ 0.54
CCDC88C-202ENST00000334448 TBC1D9BQ66K14 1250 aa18.42■□□□□ 0.54
CCDC88C-202ENST00000334448 ILDR1Q86SU0 546 aaPredicted RBP18.42■□□□□ 0.54
CCDC88C-202ENST00000334448 TTLL11Q8NHH1 800 aa18.42■□□□□ 0.54
CCDC88C-202ENST00000334448 NYXQ9GZU5 481 aa18.42■□□□□ 0.54
CCDC88C-202ENST00000334448 SMARCA5O60264 1052 aaPredicted RBP18.41■□□□□ 0.54
CCDC88C-202ENST00000334448 ZNF827Q17R98 1081 aa18.41■□□□□ 0.54
CCDC88C-202ENST00000334448 FAM161AQ3B820 660 aa18.41■□□□□ 0.54
CCDC88C-202ENST00000334448 RTL5Q5HYW3 569 aaPredicted RBP18.41■□□□□ 0.54
CCDC88C-202ENST00000334448 CARMIL3Q8ND23 1372 aa18.41■□□□□ 0.54
CCDC88C-202ENST00000334448 SASH1O94885 1247 aa18.4■□□□□ 0.54
CCDC88C-202ENST00000334448 GYS1P13807 737 aa18.4■□□□□ 0.54
CCDC88C-202ENST00000334448 SMIM5Q71RC9 77 aa18.4■□□□□ 0.54
CCDC88C-202ENST00000334448 SYNE4Q8N205 404 aa18.4■□□□□ 0.54
CCDC88C-202ENST00000334448 SETDB2Q96T68 719 aa18.4■□□□□ 0.54
CCDC88C-202ENST00000334448 BACH2Q9BYV9 841 aa18.4■□□□□ 0.54
CCDC88C-202ENST00000334448 DDX60Q8IY21 1712 aaKnown RBP18.4■□□□□ 0.54
CCDC88C-202ENST00000334448 PHF14O94880 888 aa18.39■□□□□ 0.53
CCDC88C-202ENST00000334448 IL15P40933 162 aaPredicted RBP18.39■□□□□ 0.53
CCDC88C-202ENST00000334448 OS9Q13438 667 aaPredicted RBP18.39■□□□□ 0.53
CCDC88C-202ENST00000334448 CCDC57Q2TAC2 916 aa18.39■□□□□ 0.53
CCDC88C-202ENST00000334448 C8orf34Q49A92 452 aa18.39■□□□□ 0.53
CCDC88C-202ENST00000334448 C16orf71Q8IYS4 520 aaPredicted RBP18.39■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 96.5 ms