RNA–Protein interactions for RNA: ENST00000334258.9

SYNE3-201, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SYNE3, Length 3,275 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-201ENST00000334258 ZKSCAN1P17029 563 aaPredicted RBP16.27■□□□□ 0.2
SYNE3-201ENST00000334258 IL17RAQ96F46 866 aa16.27■□□□□ 0.2
SYNE3-201ENST00000334258 CBX8Q9HC52 389 aa16.27■□□□□ 0.2
SYNE3-201ENST00000334258 DLG5Q8TDM6 1919 aa16.27■□□□□ 0.19
SYNE3-201ENST00000334258 RAB11FIP3O75154 756 aa16.27■□□□□ 0.19
SYNE3-201ENST00000334258 KIF1BPQ96EK5 621 aa16.27■□□□□ 0.19
SYNE3-201ENST00000334258 SH2B1Q9NRF2 756 aaPredicted RBP16.27■□□□□ 0.19
SYNE3-201ENST00000334258 PI4K2BQ8TCG2 481 aa16.26■□□□□ 0.19
SYNE3-201ENST00000334258 BICD2Q8TD16 824 aa16.26■□□□□ 0.19
SYNE3-201ENST00000334258 CLIP2Q9UDT6 1046 aa16.26■□□□□ 0.19
SYNE3-201ENST00000334258 ME3Q16798 604 aa16.25■□□□□ 0.19
SYNE3-201ENST00000334258 SPATA32Q96LK8 384 aa16.25■□□□□ 0.19
SYNE3-201ENST00000334258 ZNF165P49910 485 aa16.25■□□□□ 0.19
SYNE3-201ENST00000334258 PTH1RQ03431 593 aa16.25■□□□□ 0.19
SYNE3-201ENST00000334258 VPS53Q5VIR6 699 aa16.25■□□□□ 0.19
SYNE3-201ENST00000334258 ZSCAN25Q6NSZ9 544 aa16.25■□□□□ 0.19
SYNE3-201ENST00000334258 DIP2AQ14689 1571 aa16.25■□□□□ 0.19
SYNE3-201ENST00000334258 CRB1P82279 1406 aa16.25■□□□□ 0.19
SYNE3-201ENST00000334258 CDC37L1Q7L3B6 337 aa16.25■□□□□ 0.19
SYNE3-201ENST00000334258 SSH3Q8TE77 659 aa16.25■□□□□ 0.19
SYNE3-201ENST00000334258 TCEANC2Q96MN5 208 aa16.25■□□□□ 0.19
SYNE3-201ENST00000334258 EIF2S2P20042 333 aaKnown RBP16.24■□□□□ 0.19
SYNE3-201ENST00000334258 PAXBP1Q9Y5B6 917 aa16.24■□□□□ 0.19
SYNE3-201ENST00000334258 HOXC9P31274 260 aa16.24■□□□□ 0.19
SYNE3-201ENST00000334258 ZNF75DP51815 510 aa16.24■□□□□ 0.19
SYNE3-201ENST00000334258 DNAJC25Q9H1X3 360 aa16.24■□□□□ 0.19
SYNE3-201ENST00000334258 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.24■□□□□ 0.19
SYNE3-201ENST00000334258 CTNNA3Q9UI47 895 aa16.24■□□□□ 0.19
SYNE3-201ENST00000334258 V9GYY5 206 aaPredicted RBP16.24■□□□□ 0.19
SYNE3-201ENST00000334258 GOLGA6L19H0YKK7 550 aa16.23■□□□□ 0.19
SYNE3-201ENST00000334258 GLRX3O76003 335 aaKnown RBP16.23■□□□□ 0.19
SYNE3-201ENST00000334258 PDCP20941 246 aa16.23■□□□□ 0.19
SYNE3-201ENST00000334258 BRD2P25440 801 aaKnown RBP16.23■□□□□ 0.19
SYNE3-201ENST00000334258 STK3Q13188 491 aa16.23■□□□□ 0.19
SYNE3-201ENST00000334258 HDGFL1Q5TGJ6 251 aa16.23■□□□□ 0.19
SYNE3-201ENST00000334258 CEP135Q66GS9 1140 aa16.23■□□□□ 0.19
SYNE3-201ENST00000334258 NPHP4O75161 1426 aaPredicted RBP16.23■□□□□ 0.19
SYNE3-201ENST00000334258 NPHP1O15259 732 aa16.22■□□□□ 0.19
SYNE3-201ENST00000334258 PHAXQ9H814 394 aaKnown RBP16.22■□□□□ 0.19
SYNE3-201ENST00000334258 CHRNA2Q15822 529 aa16.22■□□□□ 0.19
SYNE3-201ENST00000334258 CACTINQ8WUQ7 758 aaKnown RBP16.22■□□□□ 0.19
SYNE3-201ENST00000334258 SCAND2PQ9GZW5 306 aaPredicted RBP16.22■□□□□ 0.19
SYNE3-201ENST00000334258 CLASRPQ8N2M8 674 aaKnown RBP16.21■□□□□ 0.19
SYNE3-201ENST00000334258 TPCN1Q9ULQ1 816 aa16.21■□□□□ 0.19
SYNE3-201ENST00000334258 NBPF6Q5VWK0 638 aa16.21■□□□□ 0.19
SYNE3-201ENST00000334258 NBPF4Q96M43 638 aa16.21■□□□□ 0.19
SYNE3-201ENST00000334258 OVOS2A0A0J9YW53 1432 aa16.21■□□□□ 0.19
SYNE3-201ENST00000334258 OVOS2Q6IE36 1432 aa16.21■□□□□ 0.19
SYNE3-201ENST00000334258 ZSWIM6Q9HCJ5 1215 aa16.21■□□□□ 0.19
SYNE3-201ENST00000334258 DDX19AQ9NUU7 478 aaKnown RBP16.21■□□□□ 0.19
SYNE3-201ENST00000334258 NBPF7P0C2Y1 421 aaPredicted RBP16.2■□□□□ 0.18
SYNE3-201ENST00000334258 ATF3P18847 181 aa16.2■□□□□ 0.18
SYNE3-201ENST00000334258 KRT28Q7Z3Y7 464 aa16.2■□□□□ 0.18
SYNE3-201ENST00000334258 FILIP1Q7Z7B0 1213 aa16.2■□□□□ 0.18
SYNE3-201ENST00000334258 TRMT1Q9NXH9 659 aaKnown RBP16.2■□□□□ 0.18
SYNE3-201ENST00000334258 IFIT2P09913 472 aaKnown RBP16.2■□□□□ 0.18
SYNE3-201ENST00000334258 DDX41Q9UJV9 622 aaKnown RBP16.2■□□□□ 0.18
SYNE3-201ENST00000334258 HSP90AB4PQ58FF6 505 aa16.2■□□□□ 0.18
SYNE3-201ENST00000334258 TAF3Q5VWG9 929 aa16.2■□□□□ 0.18
SYNE3-201ENST00000334258 CEBPZQ03701 1054 aaKnown RBP16.19■□□□□ 0.18
SYNE3-201ENST00000334258 GABPB1Q06547 395 aaPredicted RBP16.19■□□□□ 0.18
SYNE3-201ENST00000334258 PTPN14Q15678 1187 aa16.19■□□□□ 0.18
SYNE3-201ENST00000334258 AXIN2Q9Y2T1 843 aa16.19■□□□□ 0.18
SYNE3-201ENST00000334258 RBM8AQ9Y5S9 174 aaKnown RBP16.19■□□□□ 0.18
SYNE3-201ENST00000334258 NPHP3Q7Z494 1330 aa16.19■□□□□ 0.18
SYNE3-201ENST00000334258 BECN2A8MW95 431 aa16.19■□□□□ 0.18
SYNE3-201ENST00000334258 NR1I2O75469 434 aa16.19■□□□□ 0.18
SYNE3-201ENST00000334258 TEX2Q8IWB9 1127 aa16.19■□□□□ 0.18
SYNE3-201ENST00000334258 GPATCH3Q96I76 525 aa16.19■□□□□ 0.18
SYNE3-201ENST00000334258 ST3GAL1Q11201 340 aa16.18■□□□□ 0.18
SYNE3-201ENST00000334258 TAF7Q15545 349 aaPredicted RBP16.18■□□□□ 0.18
SYNE3-201ENST00000334258 CCDC144BQ3MJ40 725 aa16.18■□□□□ 0.18
SYNE3-201ENST00000334258 LARP1Q6PKG0 1096 aaKnown RBP16.18■□□□□ 0.18
SYNE3-201ENST00000334258 CCDC144CPQ8IYA2 1237 aa16.18■□□□□ 0.18
SYNE3-201ENST00000334258 TTC21AQ8NDW8 1320 aa16.18■□□□□ 0.18
SYNE3-201ENST00000334258 GCP02774 474 aa16.18■□□□□ 0.18
SYNE3-201ENST00000334258 PSMA5P28066 241 aa16.18■□□□□ 0.18
SYNE3-201ENST00000334258 SYCP1Q15431 976 aa16.18■□□□□ 0.18
SYNE3-201ENST00000334258 BLOC1S2Q6QNY1 142 aa16.18■□□□□ 0.18
SYNE3-201ENST00000334258 KRT222Q8N1A0 295 aa16.18■□□□□ 0.18
SYNE3-201ENST00000334258 LEO1Q8WVC0 666 aaPredicted RBP16.18■□□□□ 0.18
SYNE3-201ENST00000334258 CLSTN2Q9H4D0 955 aa16.18■□□□□ 0.18
SYNE3-201ENST00000334258 ZNF215Q9UL58 517 aaPredicted RBP16.18■□□□□ 0.18
SYNE3-201ENST00000334258 ITSN1Q15811 1721 aa16.18■□□□□ 0.18
SYNE3-201ENST00000334258 GNAT3A8MTJ3 354 aa16.18■□□□□ 0.18
SYNE3-201ENST00000334258 ARID5BQ14865 1188 aa16.18■□□□□ 0.18
SYNE3-201ENST00000334258 CREB3L3Q68CJ9 461 aa16.18■□□□□ 0.18
SYNE3-201ENST00000334258 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.18■□□□□ 0.18
SYNE3-201ENST00000334258 PLA2G4DQ86XP0 818 aa16.18■□□□□ 0.18
SYNE3-201ENST00000334258 TM6SF1Q9BZW5 370 aa16.18■□□□□ 0.18
SYNE3-201ENST00000334258 KIF18AQ8NI77 898 aa16.17■□□□□ 0.18
SYNE3-201ENST00000334258 FBXW7Q969H0 707 aa16.17■□□□□ 0.18
SYNE3-201ENST00000334258 ZBTB9Q96C00 473 aa16.17■□□□□ 0.18
SYNE3-201ENST00000334258 ECHDC1Q9NTX5 307 aa16.17■□□□□ 0.18
SYNE3-201ENST00000334258 FLT4P35916 1363 aa16.17■□□□□ 0.18
SYNE3-201ENST00000334258 ERICH4A6NGS2 130 aa16.17■□□□□ 0.18
SYNE3-201ENST00000334258 SKILP12757 684 aa16.17■□□□□ 0.18
SYNE3-201ENST00000334258 MPRIPQ6WCQ1 1025 aa16.17■□□□□ 0.18
SYNE3-201ENST00000334258 TDRD7Q8NHU6 1098 aaKnown RBP16.17■□□□□ 0.18
SYNE3-201ENST00000334258 TMEM94Q12767 1356 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms