RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 PRPF40AO75400 957 aaKnown RBP17.95■□□□□ 0.46
CLCNKA-201ENST00000331433 CPA1P15085 419 aa17.95■□□□□ 0.46
CLCNKA-201ENST00000331433 NCLP19338 710 aaKnown RBP17.95■□□□□ 0.46
CLCNKA-201ENST00000331433 DDX54Q8TDD1 881 aaKnown RBP17.95■□□□□ 0.46
CLCNKA-201ENST00000331433 FAM227BQ96M60 508 aa17.95■□□□□ 0.46
CLCNKA-201ENST00000331433 STRCQ7RTU9 1775 aa17.94■□□□□ 0.46
CLCNKA-201ENST00000331433 RFX5P48382 616 aaPredicted RBP17.94■□□□□ 0.46
CLCNKA-201ENST00000331433 PRPF40BQ6NWY9 871 aaKnown RBP17.94■□□□□ 0.46
CLCNKA-201ENST00000331433 PLBD2Q8NHP8 589 aa17.94■□□□□ 0.46
CLCNKA-201ENST00000331433 TTC14Q96N46 770 aa17.94■□□□□ 0.46
CLCNKA-201ENST00000331433 LAMB4A4D0S4 1761 aa17.94■□□□□ 0.46
CLCNKA-201ENST00000331433 BRD1O95696 1058 aa17.94■□□□□ 0.46
CLCNKA-201ENST00000331433 PTPN12Q05209 780 aaKnown RBP17.94■□□□□ 0.46
CLCNKA-201ENST00000331433 COPRSQ9NQ92 184 aa17.94■□□□□ 0.46
CLCNKA-201ENST00000331433 ISY1Q9ULR0 285 aaKnown RBP17.94■□□□□ 0.46
CLCNKA-201ENST00000331433 AK2P54819 239 aa17.93■□□□□ 0.46
CLCNKA-201ENST00000331433 NMIQ13287 307 aaPredicted RBP17.93■□□□□ 0.46
CLCNKA-201ENST00000331433 IL2RBP14784 551 aa17.93■□□□□ 0.46
CLCNKA-201ENST00000331433 CASTP20810 708 aaKnown RBP17.93■□□□□ 0.46
CLCNKA-201ENST00000331433 TTLL7Q6ZT98 887 aa17.93■□□□□ 0.46
CLCNKA-201ENST00000331433 A1BGP04217 495 aa17.92■□□□□ 0.46
CLCNKA-201ENST00000331433 RABL6Q3YEC7 729 aaPredicted RBP17.92■□□□□ 0.46
CLCNKA-201ENST00000331433 CAVIN1Q6NZI2 390 aaKnown RBP17.92■□□□□ 0.46
CLCNKA-201ENST00000331433 ERVV-2B6SEH9 535 aa17.92■□□□□ 0.46
CLCNKA-201ENST00000331433 CASP7P55210 303 aa17.92■□□□□ 0.46
CLCNKA-201ENST00000331433 TFCP2Q12800 502 aa17.92■□□□□ 0.46
CLCNKA-201ENST00000331433 ADCK5Q3MIX3 580 aa17.92■□□□□ 0.46
CLCNKA-201ENST00000331433 FSD1Q9BTV5 496 aa17.92■□□□□ 0.46
CLCNKA-201ENST00000331433 CCDC171Q6TFL3 1326 aa17.92■□□□□ 0.46
CLCNKA-201ENST00000331433 RUFY3Q7L099 469 aa17.91■□□□□ 0.46
CLCNKA-201ENST00000331433 EDC3Q96F86 508 aaKnown RBP17.91■□□□□ 0.46
CLCNKA-201ENST00000331433 CARD10Q9BWT7 1032 aa17.91■□□□□ 0.46
CLCNKA-201ENST00000331433 DBNLQ9UJU6 430 aaKnown RBP17.91■□□□□ 0.46
CLCNKA-201ENST00000331433 A0A0D9SFI3 127 aa17.91■□□□□ 0.46
CLCNKA-201ENST00000331433 GPT2Q8TD30 523 aa17.91■□□□□ 0.46
CLCNKA-201ENST00000331433 JAKMIP1Q96N16 626 aaKnown RBP17.9■□□□□ 0.46
CLCNKA-201ENST00000331433 TNNI3KQ59H18 835 aa17.9■□□□□ 0.46
CLCNKA-201ENST00000331433 LMBR1LQ6UX01 489 aa17.9■□□□□ 0.46
CLCNKA-201ENST00000331433 CHMP3Q9Y3E7 222 aa17.9■□□□□ 0.46
CLCNKA-201ENST00000331433 FPGT-TNNI3KV9GXZ4 949 aa17.9■□□□□ 0.46
CLCNKA-201ENST00000331433 KCPQ6ZWJ8 1503 aa17.9■□□□□ 0.46
CLCNKA-201ENST00000331433 UBR2Q8IWV8 1755 aa17.89■□□□□ 0.45
CLCNKA-201ENST00000331433 EVA1CP58658 441 aa17.89■□□□□ 0.45
CLCNKA-201ENST00000331433 NECTIN1Q15223 517 aa17.89■□□□□ 0.45
CLCNKA-201ENST00000331433 NKX1-1Q15270 411 aaPredicted RBP17.89■□□□□ 0.45
CLCNKA-201ENST00000331433 FOXD4L6Q3SYB3 417 aaPredicted RBP17.89■□□□□ 0.45
CLCNKA-201ENST00000331433 FOXD4L3Q6VB84 417 aaPredicted RBP17.89■□□□□ 0.45
CLCNKA-201ENST00000331433 ZBTB3Q9H5J0 574 aa17.89■□□□□ 0.45
CLCNKA-201ENST00000331433 RBM8AQ9Y5S9 174 aaKnown RBP17.89■□□□□ 0.45
CLCNKA-201ENST00000331433 NDUFB9Q9Y6M9 179 aa17.89■□□□□ 0.45
CLCNKA-201ENST00000331433 ERBB4Q15303 1308 aa17.89■□□□□ 0.45
CLCNKA-201ENST00000331433 ABCA3Q99758 1704 aa17.89■□□□□ 0.45
CLCNKA-201ENST00000331433 HIP1O00291 1037 aa17.89■□□□□ 0.45
CLCNKA-201ENST00000331433 LIMCH1Q9UPQ0 1083 aa17.89■□□□□ 0.45
CLCNKA-201ENST00000331433 COL15A1P39059 1388 aa17.88■□□□□ 0.45
CLCNKA-201ENST00000331433 KCNJ4P48050 445 aa17.88■□□□□ 0.45
CLCNKA-201ENST00000331433 RBM27Q9P2N5 1060 aaKnown RBP17.88■□□□□ 0.45
CLCNKA-201ENST00000331433 SHANK3Q9BYB0 1731 aa17.88■□□□□ 0.45
CLCNKA-201ENST00000331433 LARGE1O95461 756 aa17.88■□□□□ 0.45
CLCNKA-201ENST00000331433 ZSCAN23Q3MJ62 389 aa17.88■□□□□ 0.45
CLCNKA-201ENST00000331433 KCNB2Q92953 911 aa17.88■□□□□ 0.45
CLCNKA-201ENST00000331433 NSFL1CQ9UNZ2 370 aaKnown RBP17.88■□□□□ 0.45
CLCNKA-201ENST00000331433 H7C1W4 665 aa17.87■□□□□ 0.45
CLCNKA-201ENST00000331433 FOXO4P98177 505 aa17.87■□□□□ 0.45
CLCNKA-201ENST00000331433 CREB3L3Q68CJ9 461 aa17.87■□□□□ 0.45
CLCNKA-201ENST00000331433 FAM43AQ8N2R8 423 aa17.87■□□□□ 0.45
CLCNKA-201ENST00000331433 MAP4K1Q92918 833 aa17.87■□□□□ 0.45
CLCNKA-201ENST00000331433 DBNDD2Q9BQY9 259 aa17.87■□□□□ 0.45
CLCNKA-201ENST00000331433 PDRG1Q9NUG6 133 aa17.87■□□□□ 0.45
CLCNKA-201ENST00000331433 DTNBO60941 627 aa17.87■□□□□ 0.45
CLCNKA-201ENST00000331433 ZNF589Q86UQ0 364 aaPredicted RBP17.87■□□□□ 0.45
CLCNKA-201ENST00000331433 RPAP1Q9BWH6 1393 aaPredicted RBP17.87■□□□□ 0.45
CLCNKA-201ENST00000331433 CWC25Q9NXE8 425 aaPredicted RBP17.87■□□□□ 0.45
CLCNKA-201ENST00000331433 COL9A3Q14050 684 aaPredicted RBP17.86■□□□□ 0.45
CLCNKA-201ENST00000331433 ZSWIM6Q9HCJ5 1215 aa17.86■□□□□ 0.45
CLCNKA-201ENST00000331433 CCDC9Q9Y3X0 531 aaKnown RBP17.86■□□□□ 0.45
CLCNKA-201ENST00000331433 CYP46A1Q9Y6A2 500 aa17.86■□□□□ 0.45
CLCNKA-201ENST00000331433 ZKSCAN1P17029 563 aaPredicted RBP17.86■□□□□ 0.45
CLCNKA-201ENST00000331433 ATP5JP18859 108 aa17.86■□□□□ 0.45
CLCNKA-201ENST00000331433 NUP188Q5SRE5 1749 aa17.85■□□□□ 0.45
CLCNKA-201ENST00000331433 MED23Q9ULK4 1368 aa17.85■□□□□ 0.45
CLCNKA-201ENST00000331433 VPS53Q5VIR6 699 aa17.85■□□□□ 0.45
CLCNKA-201ENST00000331433 TM6SF1Q9BZW5 370 aa17.85■□□□□ 0.45
CLCNKA-201ENST00000331433 SNRKQ9NRH2 765 aa17.85■□□□□ 0.45
CLCNKA-201ENST00000331433 PAPPAQ13219 1627 aa17.85■□□□□ 0.45
CLCNKA-201ENST00000331433 WDR33Q9C0J8 1336 aaKnown RBP17.85■□□□□ 0.45
CLCNKA-201ENST00000331433 SLC27A2O14975 620 aa17.84■□□□□ 0.45
CLCNKA-201ENST00000331433 CHGBP05060 677 aa17.84■□□□□ 0.45
CLCNKA-201ENST00000331433 DNAJC2Q99543 621 aaKnown RBP17.84■□□□□ 0.45
CLCNKA-201ENST00000331433 ZNF330Q9Y3S2 320 aaPredicted RBP17.84■□□□□ 0.45
CLCNKA-201ENST00000331433 ZNF445P59923 1031 aa17.84■□□□□ 0.45
CLCNKA-201ENST00000331433 GDPD2Q9HCC8 539 aa17.84■□□□□ 0.45
CLCNKA-201ENST00000331433 TAF6LQ9Y6J9 622 aa17.84■□□□□ 0.45
CLCNKA-201ENST00000331433 TNS2Q63HR2 1409 aa17.84■□□□□ 0.45
CLCNKA-201ENST00000331433 CCDC83Q8IWF9 413 aa17.83■□□□□ 0.45
CLCNKA-201ENST00000331433 RRAGDQ9NQL2 400 aaPredicted RBP17.83■□□□□ 0.45
CLCNKA-201ENST00000331433 TMEM63CQ9P1W3 806 aa17.83■□□□□ 0.45
CLCNKA-201ENST00000331433 TJP1Q07157 1748 aa17.83■□□□□ 0.45
CLCNKA-201ENST00000331433 TMOD3Q9NYL9 352 aa17.83■□□□□ 0.44
CLCNKA-201ENST00000331433 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.83■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 81.6 ms