RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 LEO1Q8WVC0 666 aaPredicted RBP15.88■□□□□ 0.13
CCDC88C-201ENST00000331194 STK31Q9BXU1 1019 aa15.88■□□□□ 0.13
CCDC88C-201ENST00000331194 TRIM34Q9BYJ4 488 aa15.88■□□□□ 0.13
CCDC88C-201ENST00000331194 CLSTN2Q9H4D0 955 aa15.88■□□□□ 0.13
CCDC88C-201ENST00000331194 SOS1Q07889 1333 aaPredicted RBP15.88■□□□□ 0.13
CCDC88C-201ENST00000331194 NOL10Q9BSC4 688 aaKnown RBP15.88■□□□□ 0.13
CCDC88C-201ENST00000331194 TMEM131LA2VDJ0 1609 aa15.87■□□□□ 0.13
CCDC88C-201ENST00000331194 CDK12Q9NYV4 1490 aaPredicted RBP15.87■□□□□ 0.13
CCDC88C-201ENST00000331194 UBTFL1P0CB47 393 aaPredicted RBP15.87■□□□□ 0.13
CCDC88C-201ENST00000331194 VPS53Q5VIR6 699 aa15.87■□□□□ 0.13
CCDC88C-201ENST00000331194 CNTROBQ8N137 903 aa15.87■□□□□ 0.13
CCDC88C-201ENST00000331194 POLR3GO15318 223 aaPredicted RBP15.87■□□□□ 0.13
CCDC88C-201ENST00000331194 FOSBP53539 338 aa15.86■□□□□ 0.13
CCDC88C-201ENST00000331194 CCZ1BP86790 482 aa15.86■□□□□ 0.13
CCDC88C-201ENST00000331194 CCZ1P86791 482 aaPredicted RBP15.86■□□□□ 0.13
CCDC88C-201ENST00000331194 MTHFSDQ2M296 383 aaKnown RBP15.86■□□□□ 0.13
CCDC88C-201ENST00000331194 GORABQ5T7V8 394 aa15.86■□□□□ 0.13
CCDC88C-201ENST00000331194 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.86■□□□□ 0.13
CCDC88C-201ENST00000331194 ZBTB9Q96C00 473 aa15.86■□□□□ 0.13
CCDC88C-201ENST00000331194 ZSWIM6Q9HCJ5 1215 aa15.86■□□□□ 0.13
CCDC88C-201ENST00000331194 CRB1P82279 1406 aa15.86■□□□□ 0.13
CCDC88C-201ENST00000331194 TTC21AQ8NDW8 1320 aa15.86■□□□□ 0.13
CCDC88C-201ENST00000331194 RAB11FIP3O75154 756 aa15.86■□□□□ 0.13
CCDC88C-201ENST00000331194 SLU7O95391 586 aaKnown RBP15.86■□□□□ 0.13
CCDC88C-201ENST00000331194 ERO1AQ96HE7 468 aa15.86■□□□□ 0.13
CCDC88C-201ENST00000331194 GOLGA6L19H0YKK7 550 aa15.85■□□□□ 0.13
CCDC88C-201ENST00000331194 SRGAP3O43295 1099 aa15.85■□□□□ 0.13
CCDC88C-201ENST00000331194 IQCB1Q15051 598 aa15.85■□□□□ 0.13
CCDC88C-201ENST00000331194 NEK11Q8NG66 645 aa15.85■□□□□ 0.13
CCDC88C-201ENST00000331194 IRX3P78415 501 aaPredicted RBP15.85■□□□□ 0.13
CCDC88C-201ENST00000331194 CCAR2Q8N163 923 aaKnown RBP15.85■□□□□ 0.13
CCDC88C-201ENST00000331194 FTOQ9C0B1 505 aaKnown RBP eCLIP15.85■□□□□ 0.13
CCDC88C-201ENST00000331194 PHAXQ9H814 394 aaKnown RBP15.85■□□□□ 0.13
CCDC88C-201ENST00000331194 CALCOCO1Q9P1Z2 691 aa15.85■□□□□ 0.13
CCDC88C-201ENST00000331194 CPS1P31327 1500 aa15.85■□□□□ 0.13
CCDC88C-201ENST00000331194 KIF1BPQ96EK5 621 aa15.85■□□□□ 0.13
CCDC88C-201ENST00000331194 FHOD1Q9Y613 1164 aa15.85■□□□□ 0.13
CCDC88C-201ENST00000331194 TULP2O00295 520 aa15.84■□□□□ 0.13
CCDC88C-201ENST00000331194 JAK2O60674 1132 aa15.84■□□□□ 0.13
CCDC88C-201ENST00000331194 PPFIA3O75145 1194 aa15.84■□□□□ 0.13
CCDC88C-201ENST00000331194 CLCN6P51797 869 aa15.84■□□□□ 0.13
CCDC88C-201ENST00000331194 SECISBP2LQ93073 1101 aaKnown RBP15.84■□□□□ 0.13
CCDC88C-201ENST00000331194 SH2B1Q9NRF2 756 aaPredicted RBP15.84■□□□□ 0.13
CCDC88C-201ENST00000331194 CCDC171Q6TFL3 1326 aa15.84■□□□□ 0.13
CCDC88C-201ENST00000331194 ATP7BP35670 1465 aa15.84■□□□□ 0.13
CCDC88C-201ENST00000331194 IFIT2P09913 472 aaKnown RBP15.84■□□□□ 0.13
CCDC88C-201ENST00000331194 SYT10Q6XYQ8 523 aa15.84■□□□□ 0.13
CCDC88C-201ENST00000331194 SSH3Q8TE77 659 aa15.84■□□□□ 0.13
CCDC88C-201ENST00000331194 ZSCAN31Q96LW9 406 aaPredicted RBP15.84■□□□□ 0.13
CCDC88C-201ENST00000331194 ZCCHC17Q9NP64 241 aaKnown RBP15.84■□□□□ 0.13
CCDC88C-201ENST00000331194 DDX19AQ9NUU7 478 aaKnown RBP15.84■□□□□ 0.13
CCDC88C-201ENST00000331194 NBPF7P0C2Y1 421 aaPredicted RBP15.83■□□□□ 0.13
CCDC88C-201ENST00000331194 CYP2C19P33261 490 aa15.83■□□□□ 0.13
CCDC88C-201ENST00000331194 RBM43Q6ZSC3 357 aaKnown RBP15.83■□□□□ 0.13
CCDC88C-201ENST00000331194 FAM227BQ96M60 508 aa15.83■□□□□ 0.13
CCDC88C-201ENST00000331194 ELP1O95163 1332 aa15.83■□□□□ 0.13
CCDC88C-201ENST00000331194 PLA2G4AP47712 749 aa15.83■□□□□ 0.12
CCDC88C-201ENST00000331194 RBM8AQ9Y5S9 174 aaKnown RBP15.83■□□□□ 0.12
CCDC88C-201ENST00000331194 NPHP3Q7Z494 1330 aa15.83■□□□□ 0.12
CCDC88C-201ENST00000331194 SCAND2PQ9GZW5 306 aaPredicted RBP15.83■□□□□ 0.12
CCDC88C-201ENST00000331194 EPC1Q9H2F5 836 aa15.83■□□□□ 0.12
CCDC88C-201ENST00000331194 DNAJC2Q99543 621 aaKnown RBP15.82■□□□□ 0.12
CCDC88C-201ENST00000331194 NECTIN1Q15223 517 aa15.82■□□□□ 0.12
CCDC88C-201ENST00000331194 CREB3L3Q68CJ9 461 aa15.82■□□□□ 0.12
CCDC88C-201ENST00000331194 NUDT16Q96DE0 195 aaKnown RBP15.82■□□□□ 0.12
CCDC88C-201ENST00000331194 AOX1Q06278 1338 aa15.82■□□□□ 0.12
CCDC88C-201ENST00000331194 OS9Q13438 667 aaPredicted RBP15.81■□□□□ 0.12
CCDC88C-201ENST00000331194 ALKQ9UM73 1620 aa15.81■□□□□ 0.12
CCDC88C-201ENST00000331194 AATKQ6ZMQ8 1374 aa15.81■□□□□ 0.12
CCDC88C-201ENST00000331194 BECN2A8MW95 431 aa15.81■□□□□ 0.12
CCDC88C-201ENST00000331194 EPB41L2O43491 1005 aaKnown RBP15.81■□□□□ 0.12
CCDC88C-201ENST00000331194 SEC31AO94979 1220 aaKnown RBP15.81■□□□□ 0.12
CCDC88C-201ENST00000331194 PNMA6AP0CW24 399 aaPredicted RBP15.81■□□□□ 0.12
CCDC88C-201ENST00000331194 ST5P78524 1137 aa15.81■□□□□ 0.12
CCDC88C-201ENST00000331194 ARHGAP29Q52LW3 1261 aa15.81■□□□□ 0.12
CCDC88C-201ENST00000331194 PPP6R1Q9UPN7 881 aa15.81■□□□□ 0.12
CCDC88C-201ENST00000331194 H2AFXP16104 143 aaPredicted RBP15.81■□□□□ 0.12
CCDC88C-201ENST00000331194 BMS1Q14692 1282 aaKnown RBP15.81■□□□□ 0.12
CCDC88C-201ENST00000331194 ZKSCAN7Q9P0L1 754 aaPredicted RBP15.81■□□□□ 0.12
CCDC88C-201ENST00000331194 EDC4Q6P2E9 1401 aaKnown RBP15.8■□□□□ 0.12
CCDC88C-201ENST00000331194 MAP3K19Q56UN5 1328 aa15.8■□□□□ 0.12
CCDC88C-201ENST00000331194 RAD51AP2Q09MP3 1159 aa15.8■□□□□ 0.12
CCDC88C-201ENST00000331194 NUTM2GQ5VZR2 741 aa15.8■□□□□ 0.12
CCDC88C-201ENST00000331194 E4F1Q66K89 784 aaPredicted RBP15.8■□□□□ 0.12
CCDC88C-201ENST00000331194 FEZ2Q9UHY8 353 aaPredicted RBP15.8■□□□□ 0.12
CCDC88C-201ENST00000331194 WASLO00401 505 aaPredicted RBP15.8■□□□□ 0.12
CCDC88C-201ENST00000331194 SNW1Q13573 536 aaKnown RBP15.8■□□□□ 0.12
CCDC88C-201ENST00000331194 ZKSCAN1P17029 563 aaPredicted RBP15.79■□□□□ 0.12
CCDC88C-201ENST00000331194 CDC25BP30305 580 aa15.79■□□□□ 0.12
CCDC88C-201ENST00000331194 CCDC30Q5VVM6 783 aa15.79■□□□□ 0.12
CCDC88C-201ENST00000331194 DHX40Q8IX18 779 aaKnown RBP15.79■□□□□ 0.12
CCDC88C-201ENST00000331194 AOPEPQ8N6M6 819 aa15.79■□□□□ 0.12
CCDC88C-201ENST00000331194 NFATC2IPQ8NCF5 419 aa15.79■□□□□ 0.12
CCDC88C-201ENST00000331194 MRFAP1L1Q96HT8 127 aa15.79■□□□□ 0.12
CCDC88C-201ENST00000331194 GOLPH3LQ9H4A5 285 aa15.79■□□□□ 0.12
CCDC88C-201ENST00000331194 PA2G4Q9UQ80 394 aaKnown RBP15.79■□□□□ 0.12
CCDC88C-201ENST00000331194 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.79■□□□□ 0.12
CCDC88C-201ENST00000331194 AGLP35573 1532 aa15.79■□□□□ 0.12
CCDC88C-201ENST00000331194 GYS2P54840 703 aa15.79■□□□□ 0.12
CCDC88C-201ENST00000331194 TOB2Q14106 344 aaPredicted RBP15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms