RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 PHACTR3Q96KR7 559 aa11.81□□□□□ -0.52
CHD3-201ENST00000330494 HMGB1P09429 215 aaKnown RBP11.81□□□□□ -0.52
CHD3-201ENST00000330494 PBRM1Q86U86 1689 aa11.81□□□□□ -0.52
CHD3-201ENST00000330494 NUCB1Q02818 461 aa11.81□□□□□ -0.52
CHD3-201ENST00000330494 SH2B1Q9NRF2 756 aaPredicted RBP11.81□□□□□ -0.52
CHD3-201ENST00000330494 ZNF518AQ6AHZ1 1483 aa11.81□□□□□ -0.52
CHD3-201ENST00000330494 RALGAPBQ86X10 1494 aa11.81□□□□□ -0.52
CHD3-201ENST00000330494 GRM8O00222 908 aa11.81□□□□□ -0.52
CHD3-201ENST00000330494 CYP7A1P22680 504 aa11.81□□□□□ -0.52
CHD3-201ENST00000330494 METAP2P50579 478 aaKnown RBP eCLIP11.81□□□□□ -0.52
CHD3-201ENST00000330494 TEX13AQ9BXU3 409 aaPredicted RBP11.81□□□□□ -0.52
CHD3-201ENST00000330494 CCDC194A0A1B0GVG4 234 aa11.8□□□□□ -0.52
CHD3-201ENST00000330494 CCDC183Q5T5S1 534 aa11.8□□□□□ -0.52
CHD3-201ENST00000330494 ERCC4Q92889 916 aaPredicted RBP11.8□□□□□ -0.52
CHD3-201ENST00000330494 KAT14Q9H8E8 782 aa11.8□□□□□ -0.52
CHD3-201ENST00000330494 STX8Q9UNK0 236 aa11.8□□□□□ -0.52
CHD3-201ENST00000330494 TNIP1Q15025 636 aa11.8□□□□□ -0.52
CHD3-201ENST00000330494 CUL5Q93034 780 aa11.8□□□□□ -0.52
CHD3-201ENST00000330494 CARD14Q9BXL6 1004 aa11.8□□□□□ -0.52
CHD3-201ENST00000330494 TTF1Q15361 905 aaPredicted RBP11.8□□□□□ -0.52
CHD3-201ENST00000330494 TSPYL1Q9H0U9 437 aa11.8□□□□□ -0.52
CHD3-201ENST00000330494 RNF41Q9H4P4 317 aaPredicted RBP11.8□□□□□ -0.52
CHD3-201ENST00000330494 SBNO2Q9Y2G9 1366 aa11.8□□□□□ -0.52
CHD3-201ENST00000330494 TNNT1P13805 278 aa11.8□□□□□ -0.52
CHD3-201ENST00000330494 SPTY2D1Q68D10 685 aaPredicted RBP11.8□□□□□ -0.52
CHD3-201ENST00000330494 LUC7LQ9NQ29 371 aaKnown RBP11.8□□□□□ -0.52
CHD3-201ENST00000330494 NPHP3Q7Z494 1330 aa11.8□□□□□ -0.52
CHD3-201ENST00000330494 DDB1Q16531 1140 aa11.8□□□□□ -0.52
CHD3-201ENST00000330494 TAF3Q5VWG9 929 aa11.8□□□□□ -0.52
CHD3-201ENST00000330494 ANKRD18AQ8IVF6 992 aa11.8□□□□□ -0.52
CHD3-201ENST00000330494 TRMT1Q9NXH9 659 aaKnown RBP11.8□□□□□ -0.52
CHD3-201ENST00000330494 ORC3Q9UBD5 711 aaPredicted RBP11.8□□□□□ -0.52
CHD3-201ENST00000330494 GRM1Q13255 1194 aa11.79□□□□□ -0.52
CHD3-201ENST00000330494 AKAP4Q5JQC9 854 aa11.79□□□□□ -0.52
CHD3-201ENST00000330494 SLC4A4Q9Y6R1 1079 aa11.79□□□□□ -0.52
CHD3-201ENST00000330494 TTC21AQ8NDW8 1320 aa11.79□□□□□ -0.52
CHD3-201ENST00000330494 TAX1BP1Q86VP1 789 aa11.79□□□□□ -0.52
CHD3-201ENST00000330494 STX6O43752 255 aa11.79□□□□□ -0.52
CHD3-201ENST00000330494 IARSP41252 1262 aaKnown RBP11.79□□□□□ -0.52
CHD3-201ENST00000330494 RIMBP2O15034 1052 aa11.79□□□□□ -0.52
CHD3-201ENST00000330494 DMRT2Q9Y5R5 561 aa11.79□□□□□ -0.52
CHD3-201ENST00000330494 HSP90AA4PQ58FG1 418 aa11.79□□□□□ -0.52
CHD3-201ENST00000330494 DZIP3Q86Y13 1208 aaKnown RBP11.79□□□□□ -0.52
CHD3-201ENST00000330494 USP25Q9UHP3 1055 aa11.79□□□□□ -0.52
CHD3-201ENST00000330494 CFAP43Q8NDM7 1665 aa11.79□□□□□ -0.52
CHD3-201ENST00000330494 NPATQ14207 1427 aa11.78□□□□□ -0.52
CHD3-201ENST00000330494 KCNA6P17658 529 aa11.78□□□□□ -0.52
CHD3-201ENST00000330494 SLF2Q8IX21 1173 aa11.78□□□□□ -0.52
CHD3-201ENST00000330494 MMRN2Q9H8L6 949 aa11.78□□□□□ -0.52
CHD3-201ENST00000330494 NCOA7Q8NI08 942 aa11.78□□□□□ -0.52
CHD3-201ENST00000330494 PHAXQ9H814 394 aaKnown RBP11.78□□□□□ -0.52
CHD3-201ENST00000330494 SAMM50Q9Y512 469 aa11.78□□□□□ -0.52
CHD3-201ENST00000330494 ADAMTS12P58397 1594 aa11.78□□□□□ -0.52
CHD3-201ENST00000330494 ERLIN2O94905 339 aa11.78□□□□□ -0.52
CHD3-201ENST00000330494 BAG3O95817 575 aa11.78□□□□□ -0.52
CHD3-201ENST00000330494 RLBP1P12271 317 aa11.78□□□□□ -0.52
CHD3-201ENST00000330494 MIGA1Q8NAN2 632 aa11.78□□□□□ -0.52
CHD3-201ENST00000330494 EYA1Q99502 592 aa11.78□□□□□ -0.52
CHD3-201ENST00000330494 EIF4G3O43432 1585 aaKnown RBP11.78□□□□□ -0.52
CHD3-201ENST00000330494 KLF18A0A0U1RQI7 1052 aa11.78□□□□□ -0.52
CHD3-201ENST00000330494 PDE4BQ07343 736 aa11.78□□□□□ -0.52
CHD3-201ENST00000330494 ATP2B3Q16720 1220 aa11.78□□□□□ -0.52
CHD3-201ENST00000330494 BMP2KLQ5H9B9 411 aa11.78□□□□□ -0.52
CHD3-201ENST00000330494 CACNA2D4Q7Z3S7 1137 aa11.78□□□□□ -0.52
CHD3-201ENST00000330494 ZNF397Q8NF99 534 aaPredicted RBP11.78□□□□□ -0.52
CHD3-201ENST00000330494 A0A1W2PP64 1363 aa11.78□□□□□ -0.52
CHD3-201ENST00000330494 SEPT7Q16181 437 aaKnown RBP11.78□□□□□ -0.52
CHD3-201ENST00000330494 ARHGAP29Q52LW3 1261 aa11.78□□□□□ -0.52
CHD3-201ENST00000330494 BRF1Q92994 677 aa11.78□□□□□ -0.52
CHD3-201ENST00000330494 ANO10Q9NW15 660 aa11.78□□□□□ -0.52
CHD3-201ENST00000330494 TEX14Q8IWB6 1497 aa11.77□□□□□ -0.52
CHD3-201ENST00000330494 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.77□□□□□ -0.525e-28■□□□□ 10.7
CHD3-201ENST00000330494 SCAND2PQ9GZW5 306 aaPredicted RBP11.77□□□□□ -0.52
CHD3-201ENST00000330494 WDR62O43379 1518 aa11.77□□□□□ -0.53
CHD3-201ENST00000330494 RBM26Q5T8P6 1007 aaKnown RBP11.77□□□□□ -0.53
CHD3-201ENST00000330494 ZMYND15Q9H091 742 aa11.77□□□□□ -0.53
CHD3-201ENST00000330494 RBM8AQ9Y5S9 174 aaKnown RBP11.77□□□□□ -0.53
CHD3-201ENST00000330494 TSPY3P0CV98 308 aa11.77□□□□□ -0.53
CHD3-201ENST00000330494 TSPY8P0CW00 308 aa11.77□□□□□ -0.53
CHD3-201ENST00000330494 IL2RBP14784 551 aa11.77□□□□□ -0.53
CHD3-201ENST00000330494 IL16Q14005 1332 aa11.77□□□□□ -0.53
CHD3-201ENST00000330494 PDE1AP54750 535 aa11.77□□□□□ -0.53
CHD3-201ENST00000330494 TMEM266Q2M3C6 531 aa11.77□□□□□ -0.53
CHD3-201ENST00000330494 TSG101Q99816 390 aa11.77□□□□□ -0.53
CHD3-201ENST00000330494 IDEP14735 1019 aa11.76□□□□□ -0.53
CHD3-201ENST00000330494 HMGN5P82970 282 aaKnown RBP11.76□□□□□ -0.53
CHD3-201ENST00000330494 Q6ZUG5 572 aa11.76□□□□□ -0.53
CHD3-201ENST00000330494 BTG4Q9NY30 223 aa11.76□□□□□ -0.53
CHD3-201ENST00000330494 CLIP2Q9UDT6 1046 aa11.76□□□□□ -0.53
CHD3-201ENST00000330494 GOLGA6L10A6NI86 522 aa11.76□□□□□ -0.53
CHD3-201ENST00000330494 GCP02774 474 aa11.76□□□□□ -0.53
CHD3-201ENST00000330494 NUP88Q99567 741 aaPredicted RBP11.76□□□□□ -0.53
CHD3-201ENST00000330494 CRNKL1Q9BZJ0 848 aaKnown RBP11.76□□□□□ -0.53
CHD3-201ENST00000330494 BICC1Q9H694 974 aaKnown RBP11.76□□□□□ -0.53
CHD3-201ENST00000330494 IFIT1BQ5T764 474 aaKnown RBP11.76□□□□□ -0.53
CHD3-201ENST00000330494 SLC9C2Q5TAH2 1124 aa11.76□□□□□ -0.53
CHD3-201ENST00000330494 KSR2Q6VAB6 950 aa11.76□□□□□ -0.53
CHD3-201ENST00000330494 TSPOAP1O95153 1857 aa11.76□□□□□ -0.53
CHD3-201ENST00000330494 TOM1O60784 492 aa11.76□□□□□ -0.53
CHD3-201ENST00000330494 NMIQ13287 307 aaPredicted RBP11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms