RNA–Protein interactions for RNA: ENST00000327028.8

VIPAS39-201, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 5 BASIC

Gene VIPAS39, Length 2,614 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-201ENST00000327028 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.83□□□□□ -0.36
VIPAS39-201ENST00000327028 ZPR1O75312 459 aa12.83□□□□□ -0.36
VIPAS39-201ENST00000327028 NLRP10Q86W26 655 aa12.83□□□□□ -0.36
VIPAS39-201ENST00000327028 RWDD1Q9H446 243 aaPredicted RBP12.83□□□□□ -0.36
VIPAS39-201ENST00000327028 H7C1W4 665 aa12.83□□□□□ -0.36
VIPAS39-201ENST00000327028 GPTP24298 496 aa12.83□□□□□ -0.36
VIPAS39-201ENST00000327028 RFC4P35249 363 aa12.83□□□□□ -0.36
VIPAS39-201ENST00000327028 CENPQQ7L2Z9 268 aaPredicted RBP12.83□□□□□ -0.36
VIPAS39-201ENST00000327028 UBN2Q6ZU65 1347 aa12.83□□□□□ -0.36
VIPAS39-201ENST00000327028 IGHDP01880 384 aa12.82□□□□□ -0.36
VIPAS39-201ENST00000327028 CASP7P55210 303 aa12.82□□□□□ -0.36
VIPAS39-201ENST00000327028 PARP10Q53GL7 1025 aa12.82□□□□□ -0.36
VIPAS39-201ENST00000327028 USPL1Q5W0Q7 1092 aa12.82□□□□□ -0.36
VIPAS39-201ENST00000327028 UBE3BQ7Z3V4 1068 aa12.82□□□□□ -0.36
VIPAS39-201ENST00000327028 SIRT2Q8IXJ6 389 aa12.82□□□□□ -0.36
VIPAS39-201ENST00000327028 SUCLG2Q96I99 432 aa12.82□□□□□ -0.36
VIPAS39-201ENST00000327028 BCL2L12Q9HB09 334 aa12.82□□□□□ -0.36
VIPAS39-201ENST00000327028 SRP68Q9UHB9 627 aaKnown RBP12.82□□□□□ -0.36
VIPAS39-201ENST00000327028 LAMB2P55268 1798 aa12.82□□□□□ -0.36
VIPAS39-201ENST00000327028 PCCAP05165 728 aaPredicted RBP12.82□□□□□ -0.36
VIPAS39-201ENST00000327028 DEFB132Q7Z7B7 95 aa12.81□□□□□ -0.36
VIPAS39-201ENST00000327028 ZBTB38Q8NAP3 1195 aaPredicted RBP12.81□□□□□ -0.36
VIPAS39-201ENST00000327028 FLAD1Q8NFF5 587 aa12.81□□□□□ -0.36
VIPAS39-201ENST00000327028 TFCP2L1Q9NZI6 479 aa12.81□□□□□ -0.36
VIPAS39-201ENST00000327028 NIP7Q9Y221 180 aaKnown RBP eCLIP12.81□□□□□ -0.36
VIPAS39-201ENST00000327028 MTX1Q13505 466 aa12.8□□□□□ -0.36
VIPAS39-201ENST00000327028 KAZALD1Q96I82 304 aa12.8□□□□□ -0.36
VIPAS39-201ENST00000327028 CDHR2Q9BYE9 1310 aa12.8□□□□□ -0.36
VIPAS39-201ENST00000327028 HMMRO75330 724 aa12.8□□□□□ -0.36
VIPAS39-201ENST00000327028 ATP8B2P98198 1209 aa12.8□□□□□ -0.36
VIPAS39-201ENST00000327028 BICC1Q9H694 974 aaKnown RBP12.79□□□□□ -0.36
VIPAS39-201ENST00000327028 ANO8Q9HCE9 1232 aaPredicted RBP12.79□□□□□ -0.36
VIPAS39-201ENST00000327028 STK32BQ9NY57 414 aa12.79□□□□□ -0.36
VIPAS39-201ENST00000327028 TBC1D9BQ66K14 1250 aa12.79□□□□□ -0.36
VIPAS39-201ENST00000327028 JARID2Q92833 1246 aaPredicted RBP12.79□□□□□ -0.36
VIPAS39-201ENST00000327028 TRMT112Q9UI30 125 aaKnown RBP12.79□□□□□ -0.36
VIPAS39-201ENST00000327028 MYH3P11055 1940 aa12.79□□□□□ -0.36
VIPAS39-201ENST00000327028 DDX60Q8IY21 1712 aaKnown RBP12.78□□□□□ -0.36
VIPAS39-201ENST00000327028 SUSD4Q5VX71 490 aa12.78□□□□□ -0.36
VIPAS39-201ENST00000327028 PPP1R42Q7Z4L9 355 aa12.78□□□□□ -0.36
VIPAS39-201ENST00000327028 UTP14AQ9BVJ6 771 aaKnown RBP12.78□□□□□ -0.36
VIPAS39-201ENST00000327028 PNPLA7Q6ZV29 1317 aa12.78□□□□□ -0.36
VIPAS39-201ENST00000327028 PNMA6EA0A0J9YXQ4 647 aa12.78□□□□□ -0.36
VIPAS39-201ENST00000327028 NTSR2O95665 410 aa12.78□□□□□ -0.36
VIPAS39-201ENST00000327028 GYS1P13807 737 aa12.78□□□□□ -0.36
VIPAS39-201ENST00000327028 POLA2Q14181 598 aa12.78□□□□□ -0.36
VIPAS39-201ENST00000327028 SLC15A2Q16348 729 aa12.78□□□□□ -0.36
VIPAS39-201ENST00000327028 RABL6Q3YEC7 729 aaPredicted RBP12.78□□□□□ -0.36
VIPAS39-201ENST00000327028 PLA2G12BQ9BX93 195 aa12.78□□□□□ -0.36
VIPAS39-201ENST00000327028 EPHA10Q5JZY3 1008 aa12.77□□□□□ -0.36
VIPAS39-201ENST00000327028 COL23A1Q86Y22 540 aaPredicted RBP12.77□□□□□ -0.36
VIPAS39-201ENST00000327028 SMC5Q8IY18 1101 aa12.77□□□□□ -0.36
VIPAS39-201ENST00000327028 SSH3Q8TE77 659 aa12.77□□□□□ -0.36
VIPAS39-201ENST00000327028 FAM89AQ96GI7 184 aa12.77□□□□□ -0.36
VIPAS39-201ENST00000327028 FOXO4P98177 505 aa12.77□□□□□ -0.37
VIPAS39-201ENST00000327028 RTL5Q5HYW3 569 aaPredicted RBP12.77□□□□□ -0.37
VIPAS39-201ENST00000327028 GCC1Q96CN9 775 aa12.77□□□□□ -0.37
VIPAS39-201ENST00000327028 SETDB2Q96T68 719 aa12.77□□□□□ -0.37
VIPAS39-201ENST00000327028 SH3TC1Q8TE82 1336 aa12.77□□□□□ -0.37
VIPAS39-201ENST00000327028 CARMIL3Q8ND23 1372 aa12.77□□□□□ -0.37
VIPAS39-201ENST00000327028 SRGAP3O43295 1099 aa12.76□□□□□ -0.37
VIPAS39-201ENST00000327028 BICDL1Q6ZP65 573 aa12.76□□□□□ -0.37
VIPAS39-201ENST00000327028 UPF1Q92900 1129 aaKnown RBP eCLIP12.76□□□□□ -0.37
VIPAS39-201ENST00000327028 NYXQ9GZU5 481 aa12.76□□□□□ -0.37
VIPAS39-201ENST00000327028 DCTPP1Q9H773 170 aa12.76□□□□□ -0.37
VIPAS39-201ENST00000327028 IRS4O14654 1257 aaPredicted RBP12.75□□□□□ -0.37
VIPAS39-201ENST00000327028 NFIXQ14938 502 aa12.75□□□□□ -0.37
VIPAS39-201ENST00000327028 CASZ1Q86V15 1759 aa12.75□□□□□ -0.37
VIPAS39-201ENST00000327028 FAM177BA6PVY3 158 aa12.75□□□□□ -0.37
VIPAS39-201ENST00000327028 HSP90B1P14625 803 aaKnown RBP12.75□□□□□ -0.37
VIPAS39-201ENST00000327028 SYNE4Q8N205 404 aa12.75□□□□□ -0.37
VIPAS39-201ENST00000327028 MSH5O43196 834 aa12.74□□□□□ -0.37
VIPAS39-201ENST00000327028 LMBR1LQ6UX01 489 aa12.74□□□□□ -0.37
VIPAS39-201ENST00000327028 PDE8AO60658 829 aa12.74□□□□□ -0.37
VIPAS39-201ENST00000327028 CTSWP56202 376 aa12.74□□□□□ -0.37
VIPAS39-201ENST00000327028 NBPF5PQ86XG9 351 aaPredicted RBP12.74□□□□□ -0.37
VIPAS39-201ENST00000327028 RIC1Q4ADV7 1423 aa12.73□□□□□ -0.37
VIPAS39-201ENST00000327028 CSF1RP07333 972 aa12.73□□□□□ -0.37
VIPAS39-201ENST00000327028 TM4SF1P30408 202 aa12.73□□□□□ -0.37
VIPAS39-201ENST00000327028 NLGN1Q8N2Q7 840 aa12.73□□□□□ -0.37
VIPAS39-201ENST00000327028 NRXN2Q9P2S2 1712 aa12.73□□□□□ -0.37
VIPAS39-201ENST00000327028 ABCC12Q96J65 1359 aa12.73□□□□□ -0.37
VIPAS39-201ENST00000327028 ERFEQ4G0M1 354 aa12.73□□□□□ -0.37
VIPAS39-201ENST00000327028 NUTM1Q86Y26 1132 aa12.73□□□□□ -0.37
VIPAS39-201ENST00000327028 RFX5P48382 616 aaPredicted RBP12.72□□□□□ -0.37
VIPAS39-201ENST00000327028 TPTE2Q6XPS3 522 aa12.72□□□□□ -0.37
VIPAS39-201ENST00000327028 PDZRN3Q9UPQ7 1066 aa12.72□□□□□ -0.37
VIPAS39-201ENST00000327028 NOP58Q9Y2X3 529 aaKnown RBP12.72□□□□□ -0.37
VIPAS39-201ENST00000327028 LRP5O75197 1615 aa12.72□□□□□ -0.37
VIPAS39-201ENST00000327028 HCLS1P14317 486 aaPredicted RBP12.72□□□□□ -0.37
VIPAS39-201ENST00000327028 NUCB1Q02818 461 aa12.72□□□□□ -0.37
VIPAS39-201ENST00000327028 SLC10A5Q5PT55 438 aa12.72□□□□□ -0.37
VIPAS39-201ENST00000327028 CHMP3Q9Y3E7 222 aa12.72□□□□□ -0.37
VIPAS39-201ENST00000327028 TNRC6CQ9HCJ0 1690 aaKnown RBP12.71□□□□□ -0.37
VIPAS39-201ENST00000327028 DDR1Q08345 913 aa12.71□□□□□ -0.37
VIPAS39-201ENST00000327028 HSP90AB4PQ58FF6 505 aa12.71□□□□□ -0.37
VIPAS39-201ENST00000327028 TTLL11Q8NHH1 800 aa12.71□□□□□ -0.37
VIPAS39-201ENST00000327028 COPRSQ9NQ92 184 aa12.71□□□□□ -0.37
VIPAS39-201ENST00000327028 EXOC6BQ9Y2D4 811 aa12.71□□□□□ -0.37
VIPAS39-201ENST00000327028 RTL9Q8NET4 1388 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms