RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 LMBR1LQ6UX01 489 aa22.7■■□□□ 1.23
USP39-201ENST00000323701 SYNE4Q8N205 404 aa22.7■■□□□ 1.23
USP39-201ENST00000323701 STAP2Q9UGK3 403 aa22.7■■□□□ 1.23
USP39-201ENST00000323701 ONECUT3O60422 494 aaPredicted RBP22.7■■□□□ 1.22
USP39-201ENST00000323701 TRPC5Q9UL62 973 aaPredicted RBP22.7■■□□□ 1.22
USP39-201ENST00000323701 PTPN12Q05209 780 aaKnown RBP22.69■■□□□ 1.22
USP39-201ENST00000323701 CDC45O75419 566 aa22.69■■□□□ 1.22
USP39-201ENST00000323701 HSP90AB4PQ58FF6 505 aa22.69■■□□□ 1.22
USP39-201ENST00000323701 DZIP3Q86Y13 1208 aaKnown RBP22.69■■□□□ 1.22
USP39-201ENST00000323701 SEPT12Q8IYM1 358 aa22.69■■□□□ 1.22
USP39-201ENST00000323701 QTRT2Q9H974 415 aaKnown RBP22.69■■□□□ 1.22
USP39-201ENST00000323701 TUBGCP6Q96RT7 1819 aa22.68■■□□□ 1.22
USP39-201ENST00000323701 TRIM28Q13263 835 aaKnown RBP22.68■■□□□ 1.22
USP39-201ENST00000323701 SMARCC1Q92922 1105 aaPredicted RBP22.68■■□□□ 1.22
USP39-201ENST00000323701 FAM89AQ96GI7 184 aa22.68■■□□□ 1.22
USP39-201ENST00000323701 LINC00116Q8NCU8 138 aa22.67■■□□□ 1.22
USP39-201ENST00000323701 CICQ96RK0 1608 aaPredicted RBP22.67■■□□□ 1.22
USP39-201ENST00000323701 NUP98P52948 1817 aa22.66■■□□□ 1.22
USP39-201ENST00000323701 RREB1Q92766 1687 aa22.66■■□□□ 1.22
USP39-201ENST00000323701 SMIM5Q71RC9 77 aa22.66■■□□□ 1.22
USP39-201ENST00000323701 NLRP10Q86W26 655 aa22.66■■□□□ 1.22
USP39-201ENST00000323701 PI4K2BQ8TCG2 481 aa22.66■■□□□ 1.22
USP39-201ENST00000323701 COPRSQ9NQ92 184 aa22.66■■□□□ 1.22
USP39-201ENST00000323701 BTAF1O14981 1849 aa22.66■■□□□ 1.22
USP39-201ENST00000323701 SLC4A3P48751 1232 aa22.65■■□□□ 1.22
USP39-201ENST00000323701 G3BP1Q13283 466 aaKnown RBP eCLIP22.65■■□□□ 1.22
USP39-201ENST00000323701 C22orf23Q9BZE7 217 aa22.65■■□□□ 1.22
USP39-201ENST00000323701 UPF2Q9HAU5 1272 aaKnown RBP22.65■■□□□ 1.22
USP39-201ENST00000323701 COL5A3P25940 1745 aaPredicted RBP22.65■■□□□ 1.22
USP39-201ENST00000323701 EAF2Q96CJ1 260 aaPredicted RBP22.65■■□□□ 1.22
USP39-201ENST00000323701 CHMP3Q9Y3E7 222 aa22.65■■□□□ 1.22
USP39-201ENST00000323701 UBN2Q6ZU65 1347 aa22.64■■□□□ 1.22
USP39-201ENST00000323701 ERICH6Q7L0X2 663 aa22.63■■□□□ 1.21
USP39-201ENST00000323701 NHSQ6T4R5 1651 aa22.63■■□□□ 1.21
USP39-201ENST00000323701 ERVV-1B6SEH8 477 aa22.63■■□□□ 1.21
USP39-201ENST00000323701 MAP4K4O95819 1239 aaPredicted RBP22.63■■□□□ 1.21
USP39-201ENST00000323701 ERC1Q8IUD2 1116 aa22.63■■□□□ 1.21
USP39-201ENST00000323701 CLASRPQ8N2M8 674 aaKnown RBP22.63■■□□□ 1.21
USP39-201ENST00000323701 TLR7Q9NYK1 1049 aaKnown RBP22.63■■□□□ 1.21
USP39-201ENST00000323701 PCCAP05165 728 aaPredicted RBP22.62■■□□□ 1.21
USP39-201ENST00000323701 ZBTB38Q8NAP3 1195 aaPredicted RBP22.62■■□□□ 1.21
USP39-201ENST00000323701 ANKRD36CQ5JPF3 1778 aa22.62■■□□□ 1.21
USP39-201ENST00000323701 AACSQ86V21 672 aa22.62■■□□□ 1.21
USP39-201ENST00000323701 ZNF594Q96JF6 807 aaPredicted RBP22.62■■□□□ 1.21
USP39-201ENST00000323701 CAMTA2O94983 1202 aa22.61■■□□□ 1.21
USP39-201ENST00000323701 ZNF34Q8IZ26 560 aa22.61■■□□□ 1.21
USP39-201ENST00000323701 CCDC85AQ96PX6 553 aaPredicted RBP22.61■■□□□ 1.21
USP39-201ENST00000323701 CCDC8Q9H0W5 538 aaPredicted RBP22.61■■□□□ 1.21
USP39-201ENST00000323701 SBF2Q86WG5 1849 aa22.61■■□□□ 1.21
USP39-201ENST00000323701 AOX1Q06278 1338 aa22.6■■□□□ 1.21
USP39-201ENST00000323701 TFCP2Q12800 502 aa22.6■■□□□ 1.21
USP39-201ENST00000323701 RILPL2Q969X0 211 aa22.6■■□□□ 1.21
USP39-201ENST00000323701 USP42Q9H9J4 1324 aaKnown RBP22.6■■□□□ 1.21
USP39-201ENST00000323701 TRIM6-TRIM34B2RNG4 842 aa22.59■■□□□ 1.21
USP39-201ENST00000323701 ZNF831Q5JPB2 1677 aa22.59■■□□□ 1.21
USP39-201ENST00000323701 HSP90AB3PQ58FF7 597 aa22.59■■□□□ 1.21
USP39-201ENST00000323701 ATG9AQ7Z3C6 839 aa22.59■■□□□ 1.21
USP39-201ENST00000323701 IFIT2P09913 472 aaKnown RBP22.58■■□□□ 1.21
USP39-201ENST00000323701 AMIGO3Q86WK7 504 aa22.57■■□□□ 1.2
USP39-201ENST00000323701 DDRGK1Q96HY6 314 aa22.57■■□□□ 1.2
USP39-201ENST00000323701 TRMT112Q9UI30 125 aaKnown RBP22.57■■□□□ 1.2
USP39-201ENST00000323701 LRRC24Q50LG9 513 aa22.57■■□□□ 1.2
USP39-201ENST00000323701 PUS3Q9BZE2 481 aaKnown RBP22.57■■□□□ 1.2
USP39-201ENST00000323701 RBM25P49756 843 aaKnown RBP22.56■■□□□ 1.2
USP39-201ENST00000323701 PLA2G12BQ9BX93 195 aa22.56■■□□□ 1.2
USP39-201ENST00000323701 FAM177BA6PVY3 158 aa22.56■■□□□ 1.2
USP39-201ENST00000323701 SUSD4Q5VX71 490 aa22.56■■□□□ 1.2
USP39-201ENST00000323701 TTC41PQ6P2S7 1318 aa22.55■■□□□ 1.2
USP39-201ENST00000323701 CSF1RP07333 972 aa22.55■■□□□ 1.2
USP39-201ENST00000323701 KIF2CQ99661 725 aa22.55■■□□□ 1.2
USP39-201ENST00000323701 IL25Q9H293 177 aa22.55■■□□□ 1.2
USP39-201ENST00000323701 ECHDC1Q9NTX5 307 aa22.55■■□□□ 1.2
USP39-201ENST00000323701 CDHR2Q9BYE9 1310 aa22.55■■□□□ 1.2
USP39-201ENST00000323701 CCNL1Q9UK58 526 aaPredicted RBP22.55■■□□□ 1.2
USP39-201ENST00000323701 BRWD3Q6RI45 1802 aa22.55■■□□□ 1.2
USP39-201ENST00000323701 IRS4O14654 1257 aaPredicted RBP22.54■■□□□ 1.2
USP39-201ENST00000323701 CHMLP26374 656 aa22.54■■□□□ 1.2
USP39-201ENST00000323701 CNTNAP4Q9C0A0 1308 aa22.54■■□□□ 1.2
USP39-201ENST00000323701 TNNI3KQ59H18 835 aa22.53■■□□□ 1.2
USP39-201ENST00000323701 TTLL11Q8NHH1 800 aa22.53■■□□□ 1.2
USP39-201ENST00000323701 DBNLQ9UJU6 430 aaKnown RBP22.53■■□□□ 1.2
USP39-201ENST00000323701 FPGT-TNNI3KV9GXZ4 949 aa22.53■■□□□ 1.2
USP39-201ENST00000323701 USP26Q9BXU7 913 aa22.52■■□□□ 1.2
USP39-201ENST00000323701 GREM2Q9H772 168 aa22.52■■□□□ 1.2
USP39-201ENST00000323701 GLRX3O76003 335 aaKnown RBP22.52■■□□□ 1.2
USP39-201ENST00000323701 LY75O60449 1722 aa22.51■■□□□ 1.19
USP39-201ENST00000323701 EYA2O00167 538 aa22.51■■□□□ 1.19
USP39-201ENST00000323701 CCDC57Q2TAC2 916 aa22.51■■□□□ 1.19
USP39-201ENST00000323701 LRRC4BQ9NT99 713 aa22.51■■□□□ 1.19
USP39-201ENST00000323701 NIP7Q9Y221 180 aaKnown RBP eCLIP22.51■■□□□ 1.19
USP39-201ENST00000323701 HCLS1P14317 486 aaPredicted RBP22.5■■□□□ 1.19
USP39-201ENST00000323701 CTSWP56202 376 aa22.5■■□□□ 1.19
USP39-201ENST00000323701 CASC1Q6TDU7 716 aa22.5■■□□□ 1.19
USP39-201ENST00000323701 KRT27Q7Z3Y8 459 aa22.5■■□□□ 1.19
USP39-201ENST00000323701 DBNDD2Q9BQY9 259 aa22.5■■□□□ 1.19
USP39-201ENST00000323701 ESYT1Q9BSJ8 1104 aa22.5■■□□□ 1.19
USP39-201ENST00000323701 BCL11BQ9C0K0 894 aaPredicted RBP22.5■■□□□ 1.19
USP39-201ENST00000323701 BCORQ6W2J9 1755 aa22.49■■□□□ 1.19
USP39-201ENST00000323701 GNPATO15228 680 aa22.49■■□□□ 1.19
USP39-201ENST00000323701 BCL2L12Q9HB09 334 aa22.49■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms