RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 CWC25Q9NXE8 425 aaPredicted RBP22.96■■□□□ 1.27
HMGA1-201ENST00000311487 TRMT112Q9UI30 125 aaKnown RBP22.96■■□□□ 1.27
HMGA1-201ENST00000311487 RNF123Q5XPI4 1314 aa22.96■■□□□ 1.27
HMGA1-201ENST00000311487 GCKRQ14397 625 aa22.96■■□□□ 1.27
HMGA1-201ENST00000311487 NBPF5PQ86XG9 351 aaPredicted RBP22.96■■□□□ 1.27
HMGA1-201ENST00000311487 POLRMTO00411 1230 aaKnown RBP22.95■■□□□ 1.26
HMGA1-201ENST00000311487 NBPF7P0C2Y1 421 aaPredicted RBP22.95■■□□□ 1.26
HMGA1-201ENST00000311487 CRBNQ96SW2 442 aa22.95■■□□□ 1.26
HMGA1-201ENST00000311487 SERPINB2P05120 415 aa22.94■■□□□ 1.26
HMGA1-201ENST00000311487 CCT4P50991 539 aaKnown RBP22.94■■□□□ 1.26
HMGA1-201ENST00000311487 INTS3Q68E01 1043 aaKnown RBP22.94■■□□□ 1.26
HMGA1-201ENST00000311487 UBE3BQ7Z3V4 1068 aa22.94■■□□□ 1.26
HMGA1-201ENST00000311487 C9orf78Q9NZ63 289 aaPredicted RBP22.94■■□□□ 1.26
HMGA1-201ENST00000311487 CASZ1Q86V15 1759 aa22.94■■□□□ 1.26
HMGA1-201ENST00000311487 ATP10DQ9P241 1426 aa22.94■■□□□ 1.26
HMGA1-201ENST00000311487 AFDNP55196 1824 aaKnown RBP22.94■■□□□ 1.26
HMGA1-201ENST00000311487 GTF2E1P29083 439 aaPredicted RBP22.94■■□□□ 1.26
HMGA1-201ENST00000311487 ERFEQ4G0M1 354 aa22.94■■□□□ 1.26
HMGA1-201ENST00000311487 MEIS3Q99687 375 aa22.94■■□□□ 1.26
HMGA1-201ENST00000311487 MTFR1LQ9H019 292 aa22.94■■□□□ 1.26
HMGA1-201ENST00000311487 CCDC191Q8NCU4 936 aa22.93■■□□□ 1.26
HMGA1-201ENST00000311487 UTP14AQ9BVJ6 771 aaKnown RBP22.93■■□□□ 1.26
HMGA1-201ENST00000311487 USP44Q9H0E7 712 aa22.93■■□□□ 1.26
HMGA1-201ENST00000311487 PARP3Q9Y6F1 533 aa22.93■■□□□ 1.26
HMGA1-201ENST00000311487 SLC16A10Q8TF71 515 aa22.92■■□□□ 1.26
HMGA1-201ENST00000311487 C1orf115Q9H7X2 142 aa22.92■■□□□ 1.26
HMGA1-201ENST00000311487 NTSR2O95665 410 aa22.92■■□□□ 1.26
HMGA1-201ENST00000311487 HCLS1P14317 486 aaPredicted RBP22.92■■□□□ 1.26
HMGA1-201ENST00000311487 PDE3AQ14432 1141 aa22.92■■□□□ 1.26
HMGA1-201ENST00000311487 MVPQ14764 893 aaKnown RBP22.92■■□□□ 1.26
HMGA1-201ENST00000311487 ANKRD36CQ5JPF3 1778 aa22.91■■□□□ 1.26
HMGA1-201ENST00000311487 CARMIL3Q8ND23 1372 aa22.91■■□□□ 1.26
HMGA1-201ENST00000311487 TRIM28Q13263 835 aaKnown RBP22.9■■□□□ 1.26
HMGA1-201ENST00000311487 PARP10Q53GL7 1025 aa22.9■■□□□ 1.26
HMGA1-201ENST00000311487 PPP1R42Q7Z4L9 355 aa22.9■■□□□ 1.26
HMGA1-201ENST00000311487 PPP1R1BQ9UD71 204 aaPredicted RBP22.9■■□□□ 1.26
HMGA1-201ENST00000311487 GRM8O00222 908 aa22.9■■□□□ 1.26
HMGA1-201ENST00000311487 ALDH1L1O75891 902 aa22.9■■□□□ 1.26
HMGA1-201ENST00000311487 KLHL34Q8N239 644 aa22.9■■□□□ 1.26
HMGA1-201ENST00000311487 CNBD1Q8NA66 436 aa22.9■■□□□ 1.26
HMGA1-201ENST00000311487 EXOC6Q8TAG9 804 aa22.9■■□□□ 1.26
HMGA1-201ENST00000311487 CCDC85AQ96PX6 553 aaPredicted RBP22.9■■□□□ 1.26
HMGA1-201ENST00000311487 PRR5LQ6MZQ0 368 aa22.89■■□□□ 1.25
HMGA1-201ENST00000311487 TPTE2Q6XPS3 522 aa22.89■■□□□ 1.25
HMGA1-201ENST00000311487 MS4A1P11836 297 aa22.88■■□□□ 1.25
HMGA1-201ENST00000311487 ZBTB38Q8NAP3 1195 aaPredicted RBP22.88■■□□□ 1.25
HMGA1-201ENST00000311487 PXDNLA1KZ92 1463 aa22.88■■□□□ 1.25
HMGA1-201ENST00000311487 ZBTB7BO15156 539 aaPredicted RBP22.88■■□□□ 1.25
HMGA1-201ENST00000311487 PTGER2P43116 358 aa22.88■■□□□ 1.25
HMGA1-201ENST00000311487 ABCC12Q96J65 1359 aa22.87■■□□□ 1.25
HMGA1-201ENST00000311487 H7C1W4 665 aa22.87■■□□□ 1.25
HMGA1-201ENST00000311487 C3orf67Q6ZVT6 689 aa22.87■■□□□ 1.25
HMGA1-201ENST00000311487 UTRNP46939 3433 aa22.87■■□□□ 1.25
HMGA1-201ENST00000311487 IRS4O14654 1257 aaPredicted RBP22.86■■□□□ 1.25
HMGA1-201ENST00000311487 SH3TC1Q8TE82 1336 aa22.86■■□□□ 1.25
HMGA1-201ENST00000311487 RGL2O15211 777 aa22.86■■□□□ 1.25
HMGA1-201ENST00000311487 PCCAP05165 728 aaPredicted RBP22.86■■□□□ 1.25
HMGA1-201ENST00000311487 POLD1P28340 1107 aa22.86■■□□□ 1.25
HMGA1-201ENST00000311487 EPHA10Q5JZY3 1008 aa22.86■■□□□ 1.25
HMGA1-201ENST00000311487 SUCLG2Q96I99 432 aa22.86■■□□□ 1.25
HMGA1-201ENST00000311487 UBTFL1P0CB47 393 aaPredicted RBP22.85■■□□□ 1.25
HMGA1-201ENST00000311487 CASP7P55210 303 aa22.85■■□□□ 1.25
HMGA1-201ENST00000311487 SPON1Q9HCB6 807 aa22.85■■□□□ 1.25
HMGA1-201ENST00000311487 LRRFIP2Q9Y608 721 aaKnown RBP22.85■■□□□ 1.25
HMGA1-201ENST00000311487 SGIP1Q9BQI5 828 aa22.84■■□□□ 1.25
HMGA1-201ENST00000311487 NYXQ9GZU5 481 aa22.84■■□□□ 1.25
HMGA1-201ENST00000311487 DDX19BQ9UMR2 479 aa22.84■■□□□ 1.25
HMGA1-201ENST00000311487 KAZALD1Q96I82 304 aa22.84■■□□□ 1.25
HMGA1-201ENST00000311487 WWC3Q9ULE0 1092 aa22.84■■□□□ 1.25
HMGA1-201ENST00000311487 COL24A1Q17RW2 1714 aa22.82■■□□□ 1.24
HMGA1-201ENST00000311487 ST5P78524 1137 aa22.82■■□□□ 1.24
HMGA1-201ENST00000311487 ERICH6BQ5W0A0 696 aa22.82■■□□□ 1.24
HMGA1-201ENST00000311487 BICC1Q9H694 974 aaKnown RBP22.82■■□□□ 1.24
HMGA1-201ENST00000311487 CHMP3Q9Y3E7 222 aa22.82■■□□□ 1.24
HMGA1-201ENST00000311487 UTYO14607 1347 aa22.8■■□□□ 1.24
HMGA1-201ENST00000311487 ZBTB40Q9NUA8 1239 aa22.8■■□□□ 1.24
HMGA1-201ENST00000311487 GNAI3P08754 354 aa22.79■■□□□ 1.24
HMGA1-201ENST00000311487 FOXO4P98177 505 aa22.79■■□□□ 1.24
HMGA1-201ENST00000311487 N4BP2Q86UW6 1770 aaPredicted RBP22.79■■□□□ 1.24
HMGA1-201ENST00000311487 CHRNA5P30532 468 aa22.78■■□□□ 1.24
HMGA1-201ENST00000311487 GNAI2P04899 355 aa22.78■■□□□ 1.24
HMGA1-201ENST00000311487 LMBR1LQ6UX01 489 aa22.78■■□□□ 1.24
HMGA1-201ENST00000311487 PDE8AO60658 829 aa22.77■■□□□ 1.24
HMGA1-201ENST00000311487 CDHR2Q9BYE9 1310 aa22.77■■□□□ 1.23
HMGA1-201ENST00000311487 ANKRD44Q8N8A2 993 aa22.76■■□□□ 1.23
HMGA1-201ENST00000311487 NLRP3Q96P20 1036 aa22.76■■□□□ 1.23
HMGA1-201ENST00000311487 TNRC6CQ9HCJ0 1690 aaKnown RBP22.76■■□□□ 1.23
HMGA1-201ENST00000311487 A0A0G2JLW4 131 aa22.76■■□□□ 1.23
HMGA1-201ENST00000311487 CTSWP56202 376 aa22.76■■□□□ 1.23
HMGA1-201ENST00000311487 SLC10A5Q5PT55 438 aa22.76■■□□□ 1.23
HMGA1-201ENST00000311487 GREM2Q9H772 168 aa22.76■■□□□ 1.23
HMGA1-201ENST00000311487 SEC31BQ9NQW1 1179 aa22.76■■□□□ 1.23
HMGA1-201ENST00000311487 DDX60Q8IY21 1712 aaKnown RBP22.75■■□□□ 1.23
HMGA1-201ENST00000311487 FAM161AQ3B820 660 aa22.75■■□□□ 1.23
HMGA1-201ENST00000311487 SLC51AQ86UW1 340 aa22.75■■□□□ 1.23
HMGA1-201ENST00000311487 TTLL11Q8NHH1 800 aa22.75■■□□□ 1.23
HMGA1-201ENST00000311487 KLHDC4Q8TBB5 520 aa22.75■■□□□ 1.23
HMGA1-201ENST00000311487 BRIP1Q9BX63 1249 aa22.74■■□□□ 1.23
HMGA1-201ENST00000311487 NRXN2Q9P2S2 1712 aa22.74■■□□□ 1.23
HMGA1-201ENST00000311487 IBTKQ9P2D0 1353 aaPredicted RBP22.74■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms