RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 IFIT3O14879 490 aaKnown RBP14.8□□□□□ -0.04
COL3A1-201ENST00000304636 IGHMBP2P38935 993 aaKnown RBP14.8□□□□□ -0.04
COL3A1-201ENST00000304636 CTCFLQ8NI51 663 aaPredicted RBP14.8□□□□□ -0.04
COL3A1-201ENST00000304636 BRF1Q92994 677 aa14.8□□□□□ -0.04
COL3A1-201ENST00000304636 RBM8AQ9Y5S9 174 aaKnown RBP14.8□□□□□ -0.04
COL3A1-201ENST00000304636 ATP2B2Q01814 1243 aa14.8□□□□□ -0.04
COL3A1-201ENST00000304636 MAP3K12Q12852 859 aa14.8□□□□□ -0.04
COL3A1-201ENST00000304636 PROSER2Q86WR7 435 aaPredicted RBP14.8□□□□□ -0.04
COL3A1-201ENST00000304636 ANKRD62A6NC57 917 aa14.79□□□□□ -0.04
COL3A1-201ENST00000304636 PPP1R12BO60237 982 aaPredicted RBP14.79□□□□□ -0.04
COL3A1-201ENST00000304636 PTGS1P23219 599 aa14.79□□□□□ -0.04
COL3A1-201ENST00000304636 AOPEPQ8N6M6 819 aa14.79□□□□□ -0.04
COL3A1-201ENST00000304636 CCDC85AQ96PX6 553 aaPredicted RBP14.79□□□□□ -0.04
COL3A1-201ENST00000304636 TESK2Q96S53 571 aa14.79□□□□□ -0.04
COL3A1-201ENST00000304636 ZMYM4Q5VZL5 1548 aa14.79□□□□□ -0.04
COL3A1-201ENST00000304636 ZNF445P59923 1031 aa14.79□□□□□ -0.04
COL3A1-201ENST00000304636 ISM2Q6H9L7 571 aa14.79□□□□□ -0.04
COL3A1-201ENST00000304636 ZSWIM4Q9H7M6 989 aa14.79□□□□□ -0.04
COL3A1-201ENST00000304636 TCOF1Q13428 1488 aaKnown RBP14.79□□□□□ -0.04
COL3A1-201ENST00000304636 NPHP3Q7Z494 1330 aa14.79□□□□□ -0.04
COL3A1-201ENST00000304636 CCDC178Q5BJE1 867 aa14.79□□□□□ -0.04
COL3A1-201ENST00000304636 NCOA7Q8NI08 942 aa14.79□□□□□ -0.04
COL3A1-201ENST00000304636 CTAGE1Q96RT6 745 aa14.79□□□□□ -0.04
COL3A1-201ENST00000304636 INSRP06213 1382 aa14.79□□□□□ -0.04
COL3A1-201ENST00000304636 CTAGE15A4D2H0 777 aa14.79□□□□□ -0.04
COL3A1-201ENST00000304636 GOLIM4O00461 696 aa14.79□□□□□ -0.04
COL3A1-201ENST00000304636 CTAGE8P0CG41 777 aa14.79□□□□□ -0.04
COL3A1-201ENST00000304636 CKAP4Q07065 602 aaKnown RBP14.79□□□□□ -0.04
COL3A1-201ENST00000304636 CTAGE6Q86UF2 777 aa14.79□□□□□ -0.04
COL3A1-201ENST00000304636 CTAGE4Q8IX94 777 aa14.79□□□□□ -0.04
COL3A1-201ENST00000304636 PI4KAP2A4QPH2 592 aa14.78□□□□□ -0.04
COL3A1-201ENST00000304636 PER1O15534 1290 aaPredicted RBP14.78□□□□□ -0.04
COL3A1-201ENST00000304636 SYT1P21579 422 aa14.78□□□□□ -0.04
COL3A1-201ENST00000304636 TUBB4BP68371 445 aa14.78□□□□□ -0.04
COL3A1-201ENST00000304636 PI4KAP1Q8N8J0 262 aa14.78□□□□□ -0.04
COL3A1-201ENST00000304636 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.78□□□□□ -0.04
COL3A1-201ENST00000304636 ARHGEF12Q9NZN5 1544 aa14.78□□□□□ -0.04
COL3A1-201ENST00000304636 DHX37Q8IY37 1157 aaKnown RBP14.78□□□□□ -0.04
COL3A1-201ENST00000304636 MINDY4BA8MYZ0 360 aa14.78□□□□□ -0.04
COL3A1-201ENST00000304636 METAP2P50579 478 aaKnown RBP eCLIP14.78□□□□□ -0.04
COL3A1-201ENST00000304636 CEP85Q6P2H3 762 aa14.78□□□□□ -0.04
COL3A1-201ENST00000304636 IQCA1Q86XH1 822 aa14.78□□□□□ -0.04
COL3A1-201ENST00000304636 C8orf58Q8NAV2 365 aa14.78□□□□□ -0.04
COL3A1-201ENST00000304636 FAM114A1Q8IWE2 563 aa14.78□□□□□ -0.04
COL3A1-201ENST00000304636 CEP112Q8N8E3 955 aa14.78□□□□□ -0.04
COL3A1-201ENST00000304636 STRN4Q9NRL3 753 aa14.78□□□□□ -0.04
COL3A1-201ENST00000304636 EZRP15311 586 aaKnown RBP14.77□□□□□ -0.04
COL3A1-201ENST00000304636 GCOM1H8Y6P7 765 aaPredicted RBP14.77□□□□□ -0.04
COL3A1-201ENST00000304636 MYZAPP0CAP1 466 aa14.77□□□□□ -0.04
COL3A1-201ENST00000304636 MTIF2P46199 727 aaKnown RBP14.77□□□□□ -0.04
COL3A1-201ENST00000304636 AK2P54819 239 aa14.77□□□□□ -0.04
COL3A1-201ENST00000304636 IFIT5Q13325 482 aaKnown RBP14.77□□□□□ -0.04
COL3A1-201ENST00000304636 CCDC82Q8N4S0 544 aa14.77□□□□□ -0.04
COL3A1-201ENST00000304636 ABCF2Q9UG63 623 aa14.77□□□□□ -0.04
COL3A1-201ENST00000304636 A0A087WZG4 1122 aa14.77□□□□□ -0.05
COL3A1-201ENST00000304636 TDRD12Q587J7 1177 aaKnown RBP14.77□□□□□ -0.05
COL3A1-201ENST00000304636 RAB34Q9BZG1 259 aa14.77□□□□□ -0.05
COL3A1-201ENST00000304636 ZNF287Q9HBT7 754 aa14.77□□□□□ -0.05
COL3A1-201ENST00000304636 PEG3Q9GZU2 1588 aa14.77□□□□□ -0.05
COL3A1-201ENST00000304636 GOLGA1Q92805 767 aa14.77□□□□□ -0.05
COL3A1-201ENST00000304636 VAMP4O75379 141 aa14.76□□□□□ -0.05
COL3A1-201ENST00000304636 CCDC113Q9H0I3 377 aa14.76□□□□□ -0.05
COL3A1-201ENST00000304636 JADE2Q9NQC1 790 aa14.76□□□□□ -0.05
COL3A1-201ENST00000304636 SEC63Q9UGP8 760 aaKnown RBP14.76□□□□□ -0.05
COL3A1-201ENST00000304636 KIF20AO95235 890 aa14.76□□□□□ -0.05
COL3A1-201ENST00000304636 N4BP3O15049 544 aa14.76□□□□□ -0.05
COL3A1-201ENST00000304636 STARD3NLO95772 234 aa14.76□□□□□ -0.05
COL3A1-201ENST00000304636 TTF1Q15361 905 aaPredicted RBP14.76□□□□□ -0.05
COL3A1-201ENST00000304636 MPRIPQ6WCQ1 1025 aa14.76□□□□□ -0.05
COL3A1-201ENST00000304636 USHBP1Q8N6Y0 703 aa14.76□□□□□ -0.05
COL3A1-201ENST00000304636 BCCIPQ9P287 314 aaKnown RBP eCLIP14.76□□□□□ -0.05
COL3A1-201ENST00000304636 TTC41PQ6P2S7 1318 aa14.76□□□□□ -0.05
COL3A1-201ENST00000304636 ARHGAP30Q7Z6I6 1101 aaPredicted RBP14.76□□□□□ -0.05
COL3A1-201ENST00000304636 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.76□□□□□ -0.05
COL3A1-201ENST00000304636 V9GYY5 206 aaPredicted RBP14.76□□□□□ -0.05
COL3A1-201ENST00000304636 ADGRL1O94910 1474 aa14.76□□□□□ -0.05
COL3A1-201ENST00000304636 GRIN2AQ12879 1464 aa14.76□□□□□ -0.05
COL3A1-201ENST00000304636 NLRP5P59047 1200 aa14.76□□□□□ -0.05
COL3A1-201ENST00000304636 SMC1AQ14683 1233 aaKnown RBP14.76□□□□□ -0.05
COL3A1-201ENST00000304636 TMEM67Q5HYA8 995 aa14.76□□□□□ -0.05
COL3A1-201ENST00000304636 CCDC194A0A1B0GVG4 234 aa14.75□□□□□ -0.05
COL3A1-201ENST00000304636 HSF2BPO75031 334 aa14.75□□□□□ -0.05
COL3A1-201ENST00000304636 HLTFQ14527 1009 aaKnown RBP eCLIP14.75□□□□□ -0.05
COL3A1-201ENST00000304636 LIG1P18858 919 aa14.75□□□□□ -0.05
COL3A1-201ENST00000304636 CATIPQ7Z7H3 387 aa14.75□□□□□ -0.05
COL3A1-201ENST00000304636 CCDC175P0C221 793 aa14.75□□□□□ -0.05
COL3A1-201ENST00000304636 MCM6Q14566 821 aa14.75□□□□□ -0.05
COL3A1-201ENST00000304636 GPATCH11Q8N954 259 aa14.75□□□□□ -0.05
COL3A1-201ENST00000304636 MYRIPQ8NFW9 859 aa14.75□□□□□ -0.05
COL3A1-201ENST00000304636 RTL1A6NKG5 1358 aa14.75□□□□□ -0.05
COL3A1-201ENST00000304636 AMPD3Q01432 767 aa14.75□□□□□ -0.05
COL3A1-201ENST00000304636 RMND1Q9NWS8 449 aa14.75□□□□□ -0.05
COL3A1-201ENST00000304636 CETN2P41208 172 aa14.74□□□□□ -0.05
COL3A1-201ENST00000304636 MNAT1P51948 309 aa14.74□□□□□ -0.05
COL3A1-201ENST00000304636 TMEM266Q2M3C6 531 aa14.74□□□□□ -0.05
COL3A1-201ENST00000304636 SPECC1Q5M775 1068 aa14.74□□□□□ -0.05
COL3A1-201ENST00000304636 Q6ZUG5 572 aa14.74□□□□□ -0.05
COL3A1-201ENST00000304636 CHMLP26374 656 aa14.74□□□□□ -0.05
COL3A1-201ENST00000304636 PUS7Q96PZ0 661 aaKnown RBP14.74□□□□□ -0.05
COL3A1-201ENST00000304636 KLF18A0A0U1RQI7 1052 aa14.74□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms