RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 CCDC184Q52MB2 194 aa13.44□□□□□ -0.26
SHROOM3-201ENST00000296043 GSDMBQ8TAX9 411 aa13.44□□□□□ -0.26
SHROOM3-201ENST00000296043 CNNM3Q8NE01 707 aa13.44□□□□□ -0.26
SHROOM3-201ENST00000296043 CCDC88BA6NC98 1476 aa13.44□□□□□ -0.26
SHROOM3-201ENST00000296043 USP48Q86UV5 1035 aa13.44□□□□□ -0.26
SHROOM3-201ENST00000296043 CCDC57Q2TAC2 916 aa13.44□□□□□ -0.26
SHROOM3-201ENST00000296043 TTC16Q8NEE8 873 aa13.44□□□□□ -0.26
SHROOM3-201ENST00000296043 IQCGQ9H095 443 aaKnown RBP13.44□□□□□ -0.26
SHROOM3-201ENST00000296043 GOLGA6CA6NDK9 693 aa13.44□□□□□ -0.26
SHROOM3-201ENST00000296043 GOLGA6DP0CG33 693 aa13.44□□□□□ -0.26
SHROOM3-201ENST00000296043 PPP2R1AP30153 589 aa13.44□□□□□ -0.26
SHROOM3-201ENST00000296043 LCA5Q86VQ0 697 aa13.44□□□□□ -0.26
SHROOM3-201ENST00000296043 GOLGA6AQ9NYA3 693 aa13.44□□□□□ -0.26
SHROOM3-201ENST00000296043 MKRN1Q9UHC7 482 aaKnown RBP13.44□□□□□ -0.26
SHROOM3-201ENST00000296043 GJB2P29033 226 aa13.44□□□□□ -0.26
SHROOM3-201ENST00000296043 VCXQ9H320 206 aa13.44□□□□□ -0.26
SHROOM3-201ENST00000296043 FAM200AQ8TCP9 573 aa13.43□□□□□ -0.26
SHROOM3-201ENST00000296043 ABTB1Q969K4 478 aaPredicted RBP13.43□□□□□ -0.26
SHROOM3-201ENST00000296043 UBLCP1Q8WVY7 318 aaPredicted RBP13.43□□□□□ -0.26
SHROOM3-201ENST00000296043 SRCIN1Q9C0H9 1055 aa13.43□□□□□ -0.26
SHROOM3-201ENST00000296043 DNAJC25Q9H1X3 360 aa13.43□□□□□ -0.26
SHROOM3-201ENST00000296043 TYRO3Q06418 890 aa13.43□□□□□ -0.26
SHROOM3-201ENST00000296043 NUTM1Q86Y26 1132 aa13.43□□□□□ -0.26
SHROOM3-201ENST00000296043 VCX3BQ9H321 246 aa13.43□□□□□ -0.26
SHROOM3-201ENST00000296043 VPS41P49754 854 aa13.43□□□□□ -0.26
SHROOM3-201ENST00000296043 C8orf76Q96K31 380 aa13.43□□□□□ -0.26
SHROOM3-201ENST00000296043 COG7P83436 770 aa13.43□□□□□ -0.26
SHROOM3-201ENST00000296043 XAB2Q9HCS7 855 aaKnown RBP13.43□□□□□ -0.26
SHROOM3-201ENST00000296043 TXNDC9O14530 226 aa13.43□□□□□ -0.26
SHROOM3-201ENST00000296043 CETN3O15182 167 aa13.43□□□□□ -0.26
SHROOM3-201ENST00000296043 CAVIN2O95810 425 aa13.43□□□□□ -0.26
SHROOM3-201ENST00000296043 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.43□□□□□ -0.26
SHROOM3-201ENST00000296043 ARHGAP25P42331 645 aa13.42□□□□□ -0.26
SHROOM3-201ENST00000296043 MAP3K9P80192 1104 aa13.42□□□□□ -0.26
SHROOM3-201ENST00000296043 ZNF569Q5MCW4 686 aa13.42□□□□□ -0.26
SHROOM3-201ENST00000296043 CCDC25Q86WR0 208 aa13.42□□□□□ -0.26
SHROOM3-201ENST00000296043 LIMCH1Q9UPQ0 1083 aa13.42□□□□□ -0.26
SHROOM3-201ENST00000296043 E2F4Q16254 413 aa13.42□□□□□ -0.26
SHROOM3-201ENST00000296043 STK38LQ9Y2H1 464 aa13.42□□□□□ -0.26
SHROOM3-201ENST00000296043 PPFIA3O75145 1194 aa13.42□□□□□ -0.26
SHROOM3-201ENST00000296043 KRT32Q14532 448 aa13.42□□□□□ -0.26
SHROOM3-201ENST00000296043 KIAA0753Q2KHM9 967 aa13.42□□□□□ -0.26
SHROOM3-201ENST00000296043 N4BP3O15049 544 aa13.42□□□□□ -0.26
SHROOM3-201ENST00000296043 DESP17661 470 aa13.42□□□□□ -0.26
SHROOM3-201ENST00000296043 ATF7IPQ6VMQ6 1270 aa13.42□□□□□ -0.26
SHROOM3-201ENST00000296043 SPINK5Q9NQ38 1064 aaPredicted RBP13.42□□□□□ -0.26
SHROOM3-201ENST00000296043 CCDC172P0C7W6 258 aa13.41□□□□□ -0.26
SHROOM3-201ENST00000296043 KRT13P13646 458 aa13.41□□□□□ -0.26
SHROOM3-201ENST00000296043 MIER3Q7Z3K6 550 aa13.41□□□□□ -0.26
SHROOM3-201ENST00000296043 WASF1Q92558 559 aa13.41□□□□□ -0.26
SHROOM3-201ENST00000296043 AKR1B10O60218 316 aa13.41□□□□□ -0.26
SHROOM3-201ENST00000296043 SESN3P58005 492 aa13.41□□□□□ -0.26
SHROOM3-201ENST00000296043 MAP7Q14244 749 aa13.41□□□□□ -0.26
SHROOM3-201ENST00000296043 TWISTNBQ3B726 338 aaPredicted RBP13.41□□□□□ -0.26
SHROOM3-201ENST00000296043 TBC1D9Q6ZT07 1266 aa13.41□□□□□ -0.26
SHROOM3-201ENST00000296043 TBC1D31Q96DN5 1066 aa13.41□□□□□ -0.26
SHROOM3-201ENST00000296043 TRIM7Q9C029 511 aa13.41□□□□□ -0.26
SHROOM3-201ENST00000296043 FHOD3Q2V2M9 1422 aa13.41□□□□□ -0.26
SHROOM3-201ENST00000296043 FGFR1OPO95684 399 aaKnown RBP13.41□□□□□ -0.26
SHROOM3-201ENST00000296043 ZNF131P52739 623 aa13.41□□□□□ -0.26
SHROOM3-201ENST00000296043 BCL2L12Q9HB09 334 aa13.41□□□□□ -0.26
SHROOM3-201ENST00000296043 GUCA1BQ9UMX6 200 aa13.41□□□□□ -0.26
SHROOM3-201ENST00000296043 TLDC2A0PJX2 215 aa13.41□□□□□ -0.26
SHROOM3-201ENST00000296043 PNISRQ8TF01 805 aaKnown RBP13.41□□□□□ -0.26
SHROOM3-201ENST00000296043 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.4□□□□□ -0.26
SHROOM3-201ENST00000296043 BAIAP2L1Q9UHR4 511 aa13.4□□□□□ -0.26
SHROOM3-201ENST00000296043 MX1P20591 662 aa13.4□□□□□ -0.26
SHROOM3-201ENST00000296043 RUFY3Q7L099 469 aa13.4□□□□□ -0.26
SHROOM3-201ENST00000296043 ARHGEF2Q92974 986 aaKnown RBP13.4□□□□□ -0.26
SHROOM3-201ENST00000296043 BIRC2Q13490 618 aa13.4□□□□□ -0.26
SHROOM3-201ENST00000296043 NEDD9Q14511 834 aa13.4□□□□□ -0.26
SHROOM3-201ENST00000296043 WASHC2CQ9Y4E1 1318 aa13.4□□□□□ -0.26
SHROOM3-201ENST00000296043 RAB11FIP3O75154 756 aa13.4□□□□□ -0.26
SHROOM3-201ENST00000296043 IL1RAPL2Q9NP60 686 aa13.4□□□□□ -0.26
SHROOM3-201ENST00000296043 CCT2P78371 535 aaKnown RBP13.4□□□□□ -0.26
SHROOM3-201ENST00000296043 TRIM21P19474 475 aaKnown RBP13.4□□□□□ -0.27
SHROOM3-201ENST00000296043 COMMD10Q9Y6G5 202 aa13.4□□□□□ -0.27
SHROOM3-201ENST00000296043 SMIM24O75264 130 aa13.39□□□□□ -0.27
SHROOM3-201ENST00000296043 MUM1Q2TAK8 710 aa13.39□□□□□ -0.27
SHROOM3-201ENST00000296043 SREK1Q8WXA9 508 aaKnown RBP13.39□□□□□ -0.27
SHROOM3-201ENST00000296043 VEZTQ9HBM0 779 aa13.39□□□□□ -0.27
SHROOM3-201ENST00000296043 CHMP4BP1P59074 171 aa13.39□□□□□ -0.27
SHROOM3-201ENST00000296043 SNCBQ16143 134 aa13.39□□□□□ -0.27
SHROOM3-201ENST00000296043 TSNARE1Q96NA8 513 aa13.39□□□□□ -0.27
SHROOM3-201ENST00000296043 GOLGA8BA8MQT2 603 aa13.39□□□□□ -0.27
SHROOM3-201ENST00000296043 PRR16Q569H4 304 aa13.39□□□□□ -0.27
SHROOM3-201ENST00000296043 WWC2Q6AWC2 1192 aa13.39□□□□□ -0.27
SHROOM3-201ENST00000296043 MCUR1Q96AQ8 359 aa13.39□□□□□ -0.27
SHROOM3-201ENST00000296043 RLBP1P12271 317 aa13.39□□□□□ -0.27
SHROOM3-201ENST00000296043 ZBTB17Q13105 803 aa13.39□□□□□ -0.27
SHROOM3-201ENST00000296043 SLC24A3Q9HC58 644 aa13.39□□□□□ -0.27
SHROOM3-201ENST00000296043 CCT4P50991 539 aaKnown RBP13.38□□□□□ -0.27
SHROOM3-201ENST00000296043 CCDC63Q8NA47 563 aa13.38□□□□□ -0.27
SHROOM3-201ENST00000296043 ATICP31939 592 aa13.38□□□□□ -0.27
SHROOM3-201ENST00000296043 MAP7D1Q3KQU3 841 aa13.38□□□□□ -0.27
SHROOM3-201ENST00000296043 GKAP1Q5VSY0 366 aaPredicted RBP13.38□□□□□ -0.27
SHROOM3-201ENST00000296043 PRC1O43663 620 aa13.38□□□□□ -0.27
SHROOM3-201ENST00000296043 OPHN1O60890 802 aa13.38□□□□□ -0.27
SHROOM3-201ENST00000296043 FKBP4Q02790 459 aaKnown RBP eCLIP13.38□□□□□ -0.27
SHROOM3-201ENST00000296043 CCDC30Q5VVM6 783 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms