RNA–Protein interactions for RNA: ENST00000294816.6

LMX1A-201, Transcript of LIM homeobox transcription factor 1 alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene LMX1A, Length 3,350 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1A-201ENST00000294816 CRB1P82279 1406 aa12.1□□□□□ -0.47
LMX1A-201ENST00000294816 GLRX3O76003 335 aaKnown RBP12.1□□□□□ -0.47
LMX1A-201ENST00000294816 IFIT2P09913 472 aaKnown RBP12.1□□□□□ -0.47
LMX1A-201ENST00000294816 ZSWIM6Q9HCJ5 1215 aa12.1□□□□□ -0.47
LMX1A-201ENST00000294816 HSP90B1P14625 803 aaKnown RBP12.1□□□□□ -0.47
LMX1A-201ENST00000294816 IRX5P78411 483 aaPredicted RBP12.1□□□□□ -0.47
LMX1A-201ENST00000294816 COL9A3Q14050 684 aaPredicted RBP12.1□□□□□ -0.47
LMX1A-201ENST00000294816 BLOC1S2Q6QNY1 142 aa12.1□□□□□ -0.47
LMX1A-201ENST00000294816 CLASRPQ8N2M8 674 aaKnown RBP12.1□□□□□ -0.47
LMX1A-201ENST00000294816 CPS1P31327 1500 aa12.1□□□□□ -0.47
LMX1A-201ENST00000294816 NBPF7P0C2Y1 421 aaPredicted RBP12.1□□□□□ -0.47
LMX1A-201ENST00000294816 CREB3L3Q68CJ9 461 aa12.1□□□□□ -0.47
LMX1A-201ENST00000294816 PLCD3Q8N3E9 789 aa12.1□□□□□ -0.47
LMX1A-201ENST00000294816 NAP1L2Q9ULW6 460 aaPredicted RBP12.1□□□□□ -0.47
LMX1A-201ENST00000294816 C11orf57Q6ZUT1 292 aaPredicted RBP12.09□□□□□ -0.47
LMX1A-201ENST00000294816 ERCC4Q92889 916 aaPredicted RBP12.09□□□□□ -0.47
LMX1A-201ENST00000294816 FAM227BQ96M60 508 aa12.09□□□□□ -0.47
LMX1A-201ENST00000294816 SLU7O95391 586 aaKnown RBP12.09□□□□□ -0.47
LMX1A-201ENST00000294816 LTV1Q96GA3 475 aaPredicted RBP12.09□□□□□ -0.47
LMX1A-201ENST00000294816 AMPHP49418 695 aa12.09□□□□□ -0.47
LMX1A-201ENST00000294816 ERO1AQ96HE7 468 aa12.09□□□□□ -0.47
LMX1A-201ENST00000294816 GPATCH3Q96I76 525 aa12.09□□□□□ -0.47
LMX1A-201ENST00000294816 PGBD1Q96JS3 809 aa12.09□□□□□ -0.47
LMX1A-201ENST00000294816 NOL10Q9BSC4 688 aaKnown RBP12.09□□□□□ -0.47
LMX1A-201ENST00000294816 JAK2O60674 1132 aa12.08□□□□□ -0.48
LMX1A-201ENST00000294816 PPFIA3O75145 1194 aa12.08□□□□□ -0.48
LMX1A-201ENST00000294816 ANXA1P04083 346 aa12.08□□□□□ -0.48
LMX1A-201ENST00000294816 ERCC6LQ2NKX8 1250 aa12.08□□□□□ -0.48
LMX1A-201ENST00000294816 POLR3GO15318 223 aaPredicted RBP12.08□□□□□ -0.48
LMX1A-201ENST00000294816 PSMA5P28066 241 aa12.08□□□□□ -0.48
LMX1A-201ENST00000294816 TAF7Q15545 349 aaPredicted RBP12.08□□□□□ -0.48
LMX1A-201ENST00000294816 PA2G4Q9UQ80 394 aaKnown RBP12.08□□□□□ -0.48
LMX1A-201ENST00000294816 ELP1O95163 1332 aa12.08□□□□□ -0.48
LMX1A-201ENST00000294816 ALKQ9UM73 1620 aa12.08□□□□□ -0.48
LMX1A-201ENST00000294816 CALCOCO1Q9P1Z2 691 aa12.07□□□□□ -0.48
LMX1A-201ENST00000294816 HTATSF1O43719 755 aaKnown RBP12.07□□□□□ -0.48
LMX1A-201ENST00000294816 RBM6P78332 1123 aaKnown RBP12.07□□□□□ -0.48
LMX1A-201ENST00000294816 NMIQ13287 307 aaPredicted RBP12.07□□□□□ -0.48
LMX1A-201ENST00000294816 AACSQ86V21 672 aa12.07□□□□□ -0.48
LMX1A-201ENST00000294816 CLTCQ00610 1675 aaKnown RBP12.07□□□□□ -0.48
LMX1A-201ENST00000294816 MYO5BQ9ULV0 1848 aa12.07□□□□□ -0.48
LMX1A-201ENST00000294816 SNW1Q13573 536 aaKnown RBP12.07□□□□□ -0.48
LMX1A-201ENST00000294816 HOMER1Q86YM7 354 aa12.07□□□□□ -0.48
LMX1A-201ENST00000294816 BRF1Q92994 677 aa12.07□□□□□ -0.48
LMX1A-201ENST00000294816 FMNL2Q96PY5 1086 aa12.07□□□□□ -0.48
LMX1A-201ENST00000294816 TM6SF1Q9BZW5 370 aa12.07□□□□□ -0.48
LMX1A-201ENST00000294816 ECHDC1Q9NTX5 307 aa12.07□□□□□ -0.48
LMX1A-201ENST00000294816 TTC21BQ7Z4L5 1316 aa12.07□□□□□ -0.48
LMX1A-201ENST00000294816 TTC21AQ8NDW8 1320 aa12.07□□□□□ -0.48
LMX1A-201ENST00000294816 SLC27A2O14975 620 aa12.06□□□□□ -0.48
LMX1A-201ENST00000294816 HSP90AB4PQ58FF6 505 aa12.06□□□□□ -0.48
LMX1A-201ENST00000294816 SYT10Q6XYQ8 523 aa12.06□□□□□ -0.48
LMX1A-201ENST00000294816 FSD1Q9BTV5 496 aa12.06□□□□□ -0.48
LMX1A-201ENST00000294816 SMC2O95347 1197 aa12.06□□□□□ -0.48
LMX1A-201ENST00000294816 MLECQ14165 292 aa12.06□□□□□ -0.48
LMX1A-201ENST00000294816 ZRSR1Q15695 479 aaKnown RBP12.06□□□□□ -0.48
LMX1A-201ENST00000294816 STX1AQ16623 288 aa12.06□□□□□ -0.48
LMX1A-201ENST00000294816 CCDC73Q6ZRK6 1079 aa12.06□□□□□ -0.48
LMX1A-201ENST00000294816 CCAR1Q8IX12 1150 aaKnown RBP12.06□□□□□ -0.48
LMX1A-201ENST00000294816 CCAR2Q8N163 923 aaKnown RBP12.06□□□□□ -0.48
LMX1A-201ENST00000294816 AOPEPQ8N6M6 819 aa12.06□□□□□ -0.48
LMX1A-201ENST00000294816 CCDC8Q9H0W5 538 aaPredicted RBP12.06□□□□□ -0.48
LMX1A-201ENST00000294816 TAF6LQ9Y6J9 622 aa12.06□□□□□ -0.48
LMX1A-201ENST00000294816 NEMFO60524 1076 aa12.05□□□□□ -0.48
LMX1A-201ENST00000294816 BMS1Q14692 1282 aaKnown RBP12.05□□□□□ -0.48
LMX1A-201ENST00000294816 RNF20Q5VTR2 975 aa12.05□□□□□ -0.48
LMX1A-201ENST00000294816 KINO60870 393 aaKnown RBP12.05□□□□□ -0.48
LMX1A-201ENST00000294816 NECTIN1Q15223 517 aa12.05□□□□□ -0.48
LMX1A-201ENST00000294816 FTOQ9C0B1 505 aaKnown RBP eCLIP12.05□□□□□ -0.48
LMX1A-201ENST00000294816 BOLA2Q9H3K6 86 aa12.05□□□□□ -0.48
LMX1A-201ENST00000294816 MLH3Q9UHC1 1453 aa12.05□□□□□ -0.48
LMX1A-201ENST00000294816 PI4KAP2A4QPH2 592 aa12.05□□□□□ -0.48
LMX1A-201ENST00000294816 POLA2Q14181 598 aa12.05□□□□□ -0.48
LMX1A-201ENST00000294816 PI4KAP1Q8N8J0 262 aa12.05□□□□□ -0.48
LMX1A-201ENST00000294816 LRRC2Q9BYS8 371 aa12.05□□□□□ -0.48
LMX1A-201ENST00000294816 GNAT3A8MTJ3 354 aa12.04□□□□□ -0.48
LMX1A-201ENST00000294816 ANKRD1Q15327 319 aa12.04□□□□□ -0.48
LMX1A-201ENST00000294816 NYAP1Q6ZVC0 841 aa12.04□□□□□ -0.48
LMX1A-201ENST00000294816 C9orf78Q9NZ63 289 aaPredicted RBP12.04□□□□□ -0.48
LMX1A-201ENST00000294816 TAOK2Q9UL54 1235 aa12.04□□□□□ -0.48
LMX1A-201ENST00000294816 ACEP12821 1306 aa12.04□□□□□ -0.48
LMX1A-201ENST00000294816 IQCB1Q15051 598 aa12.04□□□□□ -0.48
LMX1A-201ENST00000294816 ARHGAP29Q52LW3 1261 aa12.04□□□□□ -0.48
LMX1A-201ENST00000294816 KLHL34Q8N239 644 aa12.04□□□□□ -0.48
LMX1A-201ENST00000294816 LRRN4CLQ8ND94 238 aa12.04□□□□□ -0.48
LMX1A-201ENST00000294816 EVI5LQ96CN4 794 aa12.04□□□□□ -0.48
LMX1A-201ENST00000294816 EYA1Q99502 592 aa12.04□□□□□ -0.48
LMX1A-201ENST00000294816 TTC41PQ6P2S7 1318 aa12.04□□□□□ -0.48
LMX1A-201ENST00000294816 PRR36Q9H6K5 1346 aa12.04□□□□□ -0.48
LMX1A-201ENST00000294816 CDC25BP30305 580 aa12.04□□□□□ -0.48
LMX1A-201ENST00000294816 CCZ1BP86790 482 aa12.04□□□□□ -0.48
LMX1A-201ENST00000294816 CCZ1P86791 482 aaPredicted RBP12.04□□□□□ -0.48
LMX1A-201ENST00000294816 MRFAP1L1Q96HT8 127 aa12.04□□□□□ -0.48
LMX1A-201ENST00000294816 ZNF446Q9NWS9 450 aa12.04□□□□□ -0.48
LMX1A-201ENST00000294816 RPS6KB1P23443 525 aa12.03□□□□□ -0.48
LMX1A-201ENST00000294816 GUCY1B3Q02153 619 aa12.03□□□□□ -0.48
LMX1A-201ENST00000294816 TMC6Q7Z403 805 aa12.03□□□□□ -0.48
LMX1A-201ENST00000294816 SDF4Q9BRK5 362 aa12.03□□□□□ -0.48
LMX1A-201ENST00000294816 SIL1Q9H173 461 aa12.03□□□□□ -0.48
LMX1A-201ENST00000294816 ME1P48163 572 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms