RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 BAG4O95429 457 aaKnown RBP21.52■■□□□ 1.03
PCDH1-201ENST00000287008 MYCNP04198 464 aaPredicted RBP21.52■■□□□ 1.03
PCDH1-201ENST00000287008 HOXC9P31274 260 aa21.52■■□□□ 1.03
PCDH1-201ENST00000287008 ADAMTS12P58397 1594 aa21.52■■□□□ 1.03
PCDH1-201ENST00000287008 CFAP100Q494V2 611 aa21.52■■□□□ 1.03
PCDH1-201ENST00000287008 ORC3Q9UBD5 711 aaPredicted RBP21.52■■□□□ 1.03
PCDH1-201ENST00000287008 PARP3Q9Y6F1 533 aa21.52■■□□□ 1.03
PCDH1-201ENST00000287008 POLR3AO14802 1390 aaPredicted RBP21.51■■□□□ 1.03
PCDH1-201ENST00000287008 PLEKHH1Q9ULM0 1364 aa21.51■■□□□ 1.03
PCDH1-201ENST00000287008 KIF20AO95235 890 aa21.51■■□□□ 1.03
PCDH1-201ENST00000287008 CCDC181Q5TID7 509 aa21.51■■□□□ 1.03
PCDH1-201ENST00000287008 TESK2Q96S53 571 aa21.51■■□□□ 1.03
PCDH1-201ENST00000287008 UBA5Q9GZZ9 404 aa21.51■■□□□ 1.03
PCDH1-201ENST00000287008 NAA16Q6N069 864 aaPredicted RBP21.51■■□□□ 1.03
PCDH1-201ENST00000287008 TBC1D9Q6ZT07 1266 aa21.51■■□□□ 1.03
PCDH1-201ENST00000287008 YTHDC2Q9H6S0 1430 aaKnown RBP21.51■■□□□ 1.03
PCDH1-201ENST00000287008 ERLIN2O94905 339 aa21.51■■□□□ 1.03
PCDH1-201ENST00000287008 ANKRD44Q8N8A2 993 aa21.51■■□□□ 1.03
PCDH1-201ENST00000287008 MAP3K5Q99683 1374 aa21.5■■□□□ 1.03
PCDH1-201ENST00000287008 F8W031 263 aaPredicted RBP21.5■■□□□ 1.03
PCDH1-201ENST00000287008 KLHL10Q6JEL2 608 aa21.5■■□□□ 1.03
PCDH1-201ENST00000287008 PATL2C9JE40 543 aaKnown RBP21.49■■□□□ 1.03
PCDH1-201ENST00000287008 POTEJP0CG39 1038 aa21.49■■□□□ 1.03
PCDH1-201ENST00000287008 TTC22Q5TAA0 569 aa21.49■■□□□ 1.03
PCDH1-201ENST00000287008 ORAI2Q96SN7 254 aa21.49■■□□□ 1.03
PCDH1-201ENST00000287008 MCM5P33992 734 aa21.49■■□□□ 1.03
PCDH1-201ENST00000287008 SLC4A8Q2Y0W8 1093 aa21.49■■□□□ 1.03
PCDH1-201ENST00000287008 TCP11L1Q9NUJ3 509 aa21.49■■□□□ 1.03
PCDH1-201ENST00000287008 METAP2P50579 478 aaKnown RBP eCLIP21.49■■□□□ 1.03
PCDH1-201ENST00000287008 ATP8B2P98198 1209 aa21.49■■□□□ 1.03
PCDH1-201ENST00000287008 TRAF1Q13077 416 aa21.49■■□□□ 1.03
PCDH1-201ENST00000287008 ZNF804AQ7Z570 1209 aa21.49■■□□□ 1.03
PCDH1-201ENST00000287008 JDP2Q8WYK2 163 aa21.49■■□□□ 1.03
PCDH1-201ENST00000287008 DNAI2Q9GZS0 605 aa21.49■■□□□ 1.03
PCDH1-201ENST00000287008 ABCC1P33527 1531 aa21.48■■□□□ 1.03
PCDH1-201ENST00000287008 UNC13AQ9UPW8 1703 aa21.48■■□□□ 1.03
PCDH1-201ENST00000287008 IRS4O14654 1257 aaPredicted RBP21.48■■□□□ 1.03
PCDH1-201ENST00000287008 PPP4R3BQ5MIZ7 849 aa21.48■■□□□ 1.03
PCDH1-201ENST00000287008 MPNDQ8N594 471 aa21.48■■□□□ 1.03
PCDH1-201ENST00000287008 TSG101Q99816 390 aa21.48■■□□□ 1.03
PCDH1-201ENST00000287008 ESR2Q92731 530 aa21.48■■□□□ 1.03
PCDH1-201ENST00000287008 ZNF771Q7L3S4 317 aaPredicted RBP21.48■■□□□ 1.03
PCDH1-201ENST00000287008 SKAP1Q86WV1 359 aa21.48■■□□□ 1.03
PCDH1-201ENST00000287008 CCDC144CPQ8IYA2 1237 aa21.48■■□□□ 1.03
PCDH1-201ENST00000287008 ATP10AO60312 1499 aa21.47■■□□□ 1.03
PCDH1-201ENST00000287008 ANO10Q9NW15 660 aa21.47■■□□□ 1.03
PCDH1-201ENST00000287008 SLC9C2Q5TAH2 1124 aa21.47■■□□□ 1.03
PCDH1-201ENST00000287008 EPB41L2O43491 1005 aaKnown RBP21.47■■□□□ 1.03
PCDH1-201ENST00000287008 HDAC1Q13547 482 aaPredicted RBP21.47■■□□□ 1.03
PCDH1-201ENST00000287008 CAMK4Q16566 473 aa21.47■■□□□ 1.03
PCDH1-201ENST00000287008 CCDC178Q5BJE1 867 aa21.47■■□□□ 1.03
PCDH1-201ENST00000287008 MRPL50Q8N5N7 158 aaKnown RBP21.47■■□□□ 1.03
PCDH1-201ENST00000287008 A0A1W2PP64 1363 aa21.47■■□□□ 1.03
PCDH1-201ENST00000287008 RNMTO43148 476 aaKnown RBP21.47■■□□□ 1.03
PCDH1-201ENST00000287008 WTAPQ15007 396 aa21.47■■□□□ 1.03
PCDH1-201ENST00000287008 LARP6Q9BRS8 491 aaKnown RBP21.47■■□□□ 1.03
PCDH1-201ENST00000287008 UBA7P41226 1012 aa21.46■■□□□ 1.03
PCDH1-201ENST00000287008 FAM177A1Q8N128 213 aaPredicted RBP21.46■■□□□ 1.03
PCDH1-201ENST00000287008 TMTC2Q8N394 836 aa21.46■■□□□ 1.03
PCDH1-201ENST00000287008 KRT23Q9C075 422 aa21.46■■□□□ 1.03
PCDH1-201ENST00000287008 GNPATO15228 680 aa21.46■■□□□ 1.03
PCDH1-201ENST00000287008 ZNF397Q8NF99 534 aaPredicted RBP21.46■■□□□ 1.03
PCDH1-201ENST00000287008 SLC4A4Q9Y6R1 1079 aa21.46■■□□□ 1.03
PCDH1-201ENST00000287008 NBPF7P0C2Y1 421 aaPredicted RBP21.45■■□□□ 1.03
PCDH1-201ENST00000287008 TSPY3P0CV98 308 aa21.45■■□□□ 1.03
PCDH1-201ENST00000287008 TSPY8P0CW00 308 aa21.45■■□□□ 1.03
PCDH1-201ENST00000287008 FGFR1OPO95684 399 aaKnown RBP21.45■■□□□ 1.02
PCDH1-201ENST00000287008 IDEP14735 1019 aa21.45■■□□□ 1.02
PCDH1-201ENST00000287008 PDE1AP54750 535 aa21.45■■□□□ 1.02
PCDH1-201ENST00000287008 TRAPPC3LQ5T215 181 aa21.45■■□□□ 1.02
PCDH1-201ENST00000287008 DDX21Q9NR30 783 aaKnown RBP eCLIP21.45■■□□□ 1.02
PCDH1-201ENST00000287008 FKBP15Q5T1M5 1219 aa21.45■■□□□ 1.02
PCDH1-201ENST00000287008 PHACTR3Q96KR7 559 aa21.45■■□□□ 1.02
PCDH1-201ENST00000287008 CARD14Q9BXL6 1004 aa21.45■■□□□ 1.02
PCDH1-201ENST00000287008 CNNM3Q8NE01 707 aa21.44■■□□□ 1.02
PCDH1-201ENST00000287008 CALML4Q96GE6 196 aa21.44■■□□□ 1.02
PCDH1-201ENST00000287008 EYA3Q99504 573 aa21.44■■□□□ 1.02
PCDH1-201ENST00000287008 SLC26A6Q9BXS9 759 aa21.44■■□□□ 1.02
PCDH1-201ENST00000287008 CNNM2Q9H8M5 875 aa21.44■■□□□ 1.02
PCDH1-201ENST00000287008 GRPEL1Q9HAV7 217 aa21.44■■□□□ 1.02
PCDH1-201ENST00000287008 ZFYVE9O95405 1425 aa21.44■■□□□ 1.02
PCDH1-201ENST00000287008 CLEC11AQ9Y240 323 aa21.44■■□□□ 1.02
PCDH1-201ENST00000287008 NEFHP12036 1026 aa21.44■■□□□ 1.02
PCDH1-201ENST00000287008 CWF19L2Q2TBE0 894 aaKnown RBP21.44■■□□□ 1.02
PCDH1-201ENST00000287008 TRMT1LQ7Z2T5 733 aaKnown RBP21.44■■□□□ 1.02
PCDH1-201ENST00000287008 BRF1Q92994 677 aa21.44■■□□□ 1.02
PCDH1-201ENST00000287008 ARHGAP29Q52LW3 1261 aa21.44■■□□□ 1.02
PCDH1-201ENST00000287008 MPHOSPH6Q99547 160 aaKnown RBP21.43■■□□□ 1.02
PCDH1-201ENST00000287008 WWC3Q9ULE0 1092 aa21.43■■□□□ 1.02
PCDH1-201ENST00000287008 SHANK2Q9UPX8 1470 aa21.43■■□□□ 1.02
PCDH1-201ENST00000287008 WDR62O43379 1518 aa21.43■■□□□ 1.02
PCDH1-201ENST00000287008 VAMP4O75379 141 aa21.43■■□□□ 1.02
PCDH1-201ENST00000287008 GNAQP50148 359 aa21.43■■□□□ 1.02
PCDH1-201ENST00000287008 CETN2P41208 172 aa21.43■■□□□ 1.02
PCDH1-201ENST00000287008 KLF18A0A0U1RQI7 1052 aa21.43■■□□□ 1.02
PCDH1-201ENST00000287008 RAB11FIP4Q86YS3 637 aa21.43■■□□□ 1.02
PCDH1-201ENST00000287008 HELBQ8NG08 1087 aaPredicted RBP21.43■■□□□ 1.02
PCDH1-201ENST00000287008 PA2G4Q9UQ80 394 aaKnown RBP21.43■■□□□ 1.02
PCDH1-201ENST00000287008 SYCE3A1L190 88 aa21.42■■□□□ 1.02
PCDH1-201ENST00000287008 PLCG2P16885 1265 aa21.42■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms