RNA–Protein interactions for RNA: ENST00000265081.6

MSH3-201, Transcript of mutS homolog 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH3, Length 4,092 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3-201ENST00000265081 TSGA10IPQ3SY00 556 aa13.53□□□□□ -0.24
MSH3-201ENST00000265081 H7C1W4 665 aa13.53□□□□□ -0.24
MSH3-201ENST00000265081 PTPN12Q05209 780 aaKnown RBP13.53□□□□□ -0.24
MSH3-201ENST00000265081 GPATCH3Q96I76 525 aa13.53□□□□□ -0.24
MSH3-201ENST00000265081 NBPF26B4DH59 902 aa13.52□□□□□ -0.24
MSH3-201ENST00000265081 HIP1O00291 1037 aa13.52□□□□□ -0.24
MSH3-201ENST00000265081 HSP90AA1P07900 732 aaKnown RBP13.52□□□□□ -0.24
MSH3-201ENST00000265081 NBPF14Q5TI25 921 aa13.52□□□□□ -0.24
MSH3-201ENST00000265081 NBPF10Q6P3W6 841 aaKnown RBP13.52□□□□□ -0.24
MSH3-201ENST00000265081 KLHL34Q8N239 644 aa13.52□□□□□ -0.24
MSH3-201ENST00000265081 NBPF15Q8N660 670 aa13.52□□□□□ -0.24
MSH3-201ENST00000265081 TMEM87AQ8NBN3 555 aa13.52□□□□□ -0.24
MSH3-201ENST00000265081 GAS2L3Q86XJ1 694 aa13.52□□□□□ -0.25
MSH3-201ENST00000265081 FOXD4L1Q9NU39 408 aa13.52□□□□□ -0.25
MSH3-201ENST00000265081 FOXO4P98177 505 aa13.52□□□□□ -0.25
MSH3-201ENST00000265081 RASEFQ8IZ41 740 aa13.52□□□□□ -0.25
MSH3-201ENST00000265081 GRPEL1Q9HAV7 217 aa13.52□□□□□ -0.25
MSH3-201ENST00000265081 ZSWIM6Q9HCJ5 1215 aa13.52□□□□□ -0.25
MSH3-201ENST00000265081 CHRNA2Q15822 529 aa13.51□□□□□ -0.25
MSH3-201ENST00000265081 RIC3Q7Z5B4 369 aa13.51□□□□□ -0.25
MSH3-201ENST00000265081 MAP4K1Q92918 833 aa13.51□□□□□ -0.25
MSH3-201ENST00000265081 ROBO1Q9Y6N7 1651 aa13.51□□□□□ -0.25
MSH3-201ENST00000265081 NEXNQ0ZGT2 675 aa13.51□□□□□ -0.25
MSH3-201ENST00000265081 USPL1Q5W0Q7 1092 aa13.51□□□□□ -0.25
MSH3-201ENST00000265081 MYH7P12883 1935 aa13.51□□□□□ -0.25
MSH3-201ENST00000265081 RUFY2Q8WXA3 655 aa13.51□□□□□ -0.25
MSH3-201ENST00000265081 ZNF609O15014 1411 aa13.5□□□□□ -0.25
MSH3-201ENST00000265081 GPR108Q9NPR9 543 aa13.5□□□□□ -0.25
MSH3-201ENST00000265081 DOT1LQ8TEK3 1739 aa13.5□□□□□ -0.25
MSH3-201ENST00000265081 CCDC171Q6TFL3 1326 aa13.5□□□□□ -0.25
MSH3-201ENST00000265081 PALLDQ8WX93 1383 aa13.5□□□□□ -0.25
MSH3-201ENST00000265081 NWD2Q9ULI1 1742 aa13.5□□□□□ -0.25
MSH3-201ENST00000265081 ATP5JP18859 108 aa13.5□□□□□ -0.25
MSH3-201ENST00000265081 VPS53Q5VIR6 699 aa13.5□□□□□ -0.25
MSH3-201ENST00000265081 ZCRB1Q8TBF4 217 aaKnown RBP13.5□□□□□ -0.25
MSH3-201ENST00000265081 MYD88Q99836 296 aa13.5□□□□□ -0.25
MSH3-201ENST00000265081 SLAIN2Q9P270 581 aa13.5□□□□□ -0.25
MSH3-201ENST00000265081 GOLGA6L22H0YM25 854 aa13.5□□□□□ -0.25
MSH3-201ENST00000265081 TTC5Q8N0Z6 440 aa13.5□□□□□ -0.25
MSH3-201ENST00000265081 TLR7Q9NYK1 1049 aaKnown RBP13.5□□□□□ -0.25
MSH3-201ENST00000265081 CABP4P57796 275 aa13.49□□□□□ -0.25
MSH3-201ENST00000265081 PTH1RQ03431 593 aa13.49□□□□□ -0.25
MSH3-201ENST00000265081 RUFY3Q7L099 469 aa13.49□□□□□ -0.25
MSH3-201ENST00000265081 AACSQ86V21 672 aa13.49□□□□□ -0.25
MSH3-201ENST00000265081 GPT2Q8TD30 523 aa13.49□□□□□ -0.25
MSH3-201ENST00000265081 ATG3Q9NT62 314 aa13.49□□□□□ -0.25
MSH3-201ENST00000265081 NUP98P52948 1817 aa13.49□□□□□ -0.25
MSH3-201ENST00000265081 IFIT2P09913 472 aaKnown RBP13.49□□□□□ -0.25
MSH3-201ENST00000265081 MAP4K4O95819 1239 aaPredicted RBP13.49□□□□□ -0.25
MSH3-201ENST00000265081 G3BP1Q13283 466 aaKnown RBP eCLIP13.48□□□□□ -0.25
MSH3-201ENST00000265081 CASZ1Q86V15 1759 aa13.48□□□□□ -0.25
MSH3-201ENST00000265081 KDM4FA0A1W2PPD8 638 aa13.48□□□□□ -0.25
MSH3-201ENST00000265081 BCORQ6W2J9 1755 aa13.48□□□□□ -0.25
MSH3-201ENST00000265081 MYL6BP14649 208 aa13.48□□□□□ -0.25
MSH3-201ENST00000265081 VSIG10Q8N0Z9 540 aa13.48□□□□□ -0.25
MSH3-201ENST00000265081 COL5A3P25940 1745 aaPredicted RBP13.48□□□□□ -0.25
MSH3-201ENST00000265081 DOCK2Q92608 1830 aa13.47□□□□□ -0.25
MSH3-201ENST00000265081 IL2RBP14784 551 aa13.47□□□□□ -0.25
MSH3-201ENST00000265081 TNNI3KQ59H18 835 aa13.47□□□□□ -0.25
MSH3-201ENST00000265081 FPGT-TNNI3KV9GXZ4 949 aa13.47□□□□□ -0.25
MSH3-201ENST00000265081 A0A1B0GUL6 1792 aa13.47□□□□□ -0.25
MSH3-201ENST00000265081 TCHHQ07283 1943 aa13.47□□□□□ -0.25
MSH3-201ENST00000265081 ST3GAL1Q11201 340 aa13.47□□□□□ -0.25
MSH3-201ENST00000265081 AIMP1Q12904 312 aaKnown RBP13.47□□□□□ -0.25
MSH3-201ENST00000265081 CWC27Q6UX04 472 aaKnown RBP13.47□□□□□ -0.25
MSH3-201ENST00000265081 CSB-PGBD3P0DP91 1061 aa13.47□□□□□ -0.25
MSH3-201ENST00000265081 AK2P54819 239 aa13.47□□□□□ -0.25
MSH3-201ENST00000265081 ATG9AQ7Z3C6 839 aa13.47□□□□□ -0.25
MSH3-201ENST00000265081 PPP1R9BQ96SB3 815 aa13.47□□□□□ -0.25
MSH3-201ENST00000265081 HSPA2P54652 639 aa13.46□□□□□ -0.25
MSH3-201ENST00000265081 TRIM28Q13263 835 aaKnown RBP13.46□□□□□ -0.25
MSH3-201ENST00000265081 PANK2Q9BZ23 570 aa13.46□□□□□ -0.25
MSH3-201ENST00000265081 DBNLQ9UJU6 430 aaKnown RBP13.46□□□□□ -0.25
MSH3-201ENST00000265081 LIMCH1Q9UPQ0 1083 aa13.46□□□□□ -0.25
MSH3-201ENST00000265081 CIAO1O76071 339 aa13.46□□□□□ -0.25
MSH3-201ENST00000265081 MCTP1Q6DN14 999 aa13.46□□□□□ -0.25
MSH3-201ENST00000265081 ISCA1Q9BUE6 129 aa13.46□□□□□ -0.25
MSH3-201ENST00000265081 PLA2G12BQ9BX93 195 aa13.46□□□□□ -0.25
MSH3-201ENST00000265081 AKAP11Q9UKA4 1901 aa13.46□□□□□ -0.25
MSH3-201ENST00000265081 NMIQ13287 307 aaPredicted RBP13.46□□□□□ -0.26
MSH3-201ENST00000265081 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.46□□□□□ -0.26
MSH3-201ENST00000265081 HAUS7Q99871 368 aa13.46□□□□□ -0.26
MSH3-201ENST00000265081 DIAPH3Q9NSV4 1193 aa13.46□□□□□ -0.26
MSH3-201ENST00000265081 OS9Q13438 667 aaPredicted RBP13.45□□□□□ -0.26
MSH3-201ENST00000265081 GZF1Q9H116 711 aaPredicted RBP13.45□□□□□ -0.26
MSH3-201ENST00000265081 SH3TC1Q8TE82 1336 aa13.45□□□□□ -0.26
MSH3-201ENST00000265081 ZNF335Q9H4Z2 1342 aaPredicted RBP13.45□□□□□ -0.26
MSH3-201ENST00000265081 BCL9O00512 1426 aa13.45□□□□□ -0.26
MSH3-201ENST00000265081 ZSCAN23Q3MJ62 389 aa13.45□□□□□ -0.26
MSH3-201ENST00000265081 CCDC191Q8NCU4 936 aa13.45□□□□□ -0.26
MSH3-201ENST00000265081 A0A0D9SFI3 127 aa13.44□□□□□ -0.26
MSH3-201ENST00000265081 ADCK5Q3MIX3 580 aa13.44□□□□□ -0.26
MSH3-201ENST00000265081 UPF3BQ9BZI7 483 aaKnown RBP13.44□□□□□ -0.26
MSH3-201ENST00000265081 SH2B1Q9NRF2 756 aaPredicted RBP13.44□□□□□ -0.26
MSH3-201ENST00000265081 CREB3L3Q68CJ9 461 aa13.44□□□□□ -0.26
MSH3-201ENST00000265081 ZSCAN31Q96LW9 406 aaPredicted RBP13.44□□□□□ -0.26
MSH3-201ENST00000265081 FBXO3Q9UK99 471 aa13.44□□□□□ -0.26
MSH3-201ENST00000265081 SLIT2O94813 1529 aa13.44□□□□□ -0.26
MSH3-201ENST00000265081 WDR33Q9C0J8 1336 aaKnown RBP13.44□□□□□ -0.26
MSH3-201ENST00000265081 FAM227BQ96M60 508 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms